Prupe.3G098000_v2.0.a1

cellular component organization

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Forward (+)
7507942 .. 7509443
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G098000.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 357 bp
ATGAAATGTGTCACTCATAACAGTTATATTGTATCTTCGAGCCCTACCAAGCCTACCACCCCCTTCTCTGCACCTGATACAAGGCAGTTGAAGTCCTCGCCACCCTGCAGATCTCAATCTAGCAACTGCACCTGGAACCAAGGTAAAATCAAGAGACTCAGATCATCATATATCGTTGGACAAAACTTTGCTTTCCCAATGCGAAAATTCAGCAACACACCCAAGAGAAGAAGAAATTGGTTCGAGGAAATCTTTACCAGGTTATATTCAAGATTGTCCTTGCTGGACTCTATACAACTCAATGAACAATTGCTAACAATGGCAGAGGTAGTGCATGGGGCTGGCTTGTCAAAATAA

Protein Analysis

119

Amino Acids

13.51

Weight (kDa)

10.4

Isoelectric Point (pI)

63.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 206
AgsI TTSAA 2 cut(s) 91, 270
AjnI CCWGG 2 cut(s) 131, 257
AjuI GAANNNNNNNTTGG 2 cut(s) 220, 252
Alw26I GTCTC 1 cut(s) 148
ApoI RAATTY 1 cut(s) 206
BanII GRGCYC 1 cut(s) 44
BciT130I CCWGG 2 cut(s) 133, 259
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 1 cut(s) 120
BfmI CTRYAG 1 cut(s) 106
BglII AGATCT 1 cut(s) 110
Bme1390I CCNGG 2 cut(s) 133, 259
BmiI GGNNCC 1 cut(s) 137
BmrFI CCNGG 2 cut(s) 133, 259
BsaBI GATNNNNATC 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 139
Bse8I GATNNNNATC 1 cut(s) 115
BseBI CCWGG 2 cut(s) 133, 259
BseDI CCNNGG 1 cut(s) 139
BseJI GATNNNNATC 1 cut(s) 115
BseMII CTCAG 1 cut(s) 172
BsgI GTGCAG 2 cut(s) 54, 112
BsmAI GTCTC 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 2 cut(s) 110, 161
BspCNI CTCAG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 137
BspMAI CTGCAG 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 2 cut(s) 110, 161
BssT1I CCWWGG 1 cut(s) 139
Bst2UI CCWGG 2 cut(s) 133, 259
Bst4CI ACNGT 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 1 cut(s) 158
BstKTI GATC 2 cut(s) 113, 164
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 2 cut(s) 110, 161
BstNI CCWGG 2 cut(s) 133, 259
BstSCI CCNGG 2 cut(s) 131, 257
BstSFI CTRYAG 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
Cac8I GCNNGC 1 cut(s) 343
CsiI ACCWGGT 1 cut(s) 257
CviAII CATG 1 cut(s) 335
CviJI RGCY 4 cut(s) 42, 52, 341, 345
CviKI_1 RGCY 4 cut(s) 42, 52, 341, 345
DdeI CTNAG 1 cut(s) 158
DpnI GATC 2 cut(s) 112, 163
DpnII GATC 2 cut(s) 110, 161
Eco130I CCWWGG 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 131, 257
EcoT14I CCWWGG 1 cut(s) 139
EcoT38I GRGCYC 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 1 cut(s) 338
FaiI YATR 7 cut(s) 18, 27, 169, 171, 265, 293, 336
FatI CATG 1 cut(s) 334
FriOI GRGCYC 1 cut(s) 44
FspBI CTAG 1 cut(s) 120
Hin1II CATG 1 cut(s) 338
HinfI GANTC 2 cut(s) 156, 287
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 2 cut(s) 151, 270
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 4 cut(s) 71, 108, 129, 334
HpyF3I CTNAG 1 cut(s) 158
Hsp92II CATG 1 cut(s) 338
Kzo9I GATC 2 cut(s) 110, 161
LpnPI CCDG 8 cut(s) 87, 118, 118, 145, 244, 269, 271, 327
MabI ACCWGGT 1 cut(s) 257
MaeI CTAG 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 10
MalI GATC 2 cut(s) 112, 163
MboI GATC 2 cut(s) 110, 161
MboII GAAGA 3 cut(s) 27, 240, 243
MfeI CAATTG 1 cut(s) 308
MflI RGATCY 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 3 cut(s) 206, 235, 308
MlyI GAGTC 2 cut(s) 150, 281
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 3 cut(s) 106, 238, 319
MspR9I CCNGG 2 cut(s) 133, 259
MunI CAATTG 1 cut(s) 308
MvaI CCWGG 2 cut(s) 133, 259
NdeII GATC 2 cut(s) 110, 161
NlaIII CATG 1 cut(s) 338
NlaIV GGNNCC 1 cut(s) 137
NmuCI GTSAC 1 cut(s) 10
PleI GAGTC 2 cut(s) 150, 281
PpsI GAGTC 2 cut(s) 150, 281
Psp6I CCWGG 2 cut(s) 131, 257
PspGI CCWGG 2 cut(s) 131, 257
PspN4I GGNNCC 1 cut(s) 137
PstI CTGCAG 1 cut(s) 110
PsuI RGATCY 1 cut(s) 110
Sau3AI GATC 2 cut(s) 110, 161
SchI GAGTC 2 cut(s) 150, 281
ScrFI CCNGG 2 cut(s) 133, 259
SduI GDGCHC 1 cut(s) 44
SetI ASST 5 cut(s) 76, 134, 145, 263, 330
SexAI ACCWGGT 1 cut(s) 257
SfcI CTRYAG 1 cut(s) 106
Sse9I AATT 3 cut(s) 206, 235, 308
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 2 cut(s) 131, 257
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 2 cut(s) 38, 243
TasI AATT 3 cut(s) 206, 235, 308
TseFI GTSAC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 2 cut(s) 17, 318
XapI RAATTY 1 cut(s) 206
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.