Prupe.3G100400_v2.0.a1

protein phosphatase 2C 60

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Reverse (-)
7694700 .. 7696797
2098 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G100400.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 249 bp
ATGTCAAGCCAACAACTTGTGGACTACGTTCGGGAACAATTAAAACATGAAAGTAAACTCTCGGTGATTTGTGAGAGAGTGTTTGAAAGGTGCTTGGCACCATCATCTGGTGGAGAGGGGTGTGACAACATGACAATGATCTTGGTTCAGCTTAAGAAACCTGTTACTTCAGCTGCTTCTGTCGAGGACAAGCCTCTCTCGTCGAATCCATCATCTGAGAAGGATAAAAGCTCAGCAAAAGCTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

83

Amino Acids

8.94

Weight (kDa)

7.7

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 97
AccB7I CCANNNNNTGG 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 153
AfiI CCNNNNNNNGG 1 cut(s) 107
AflII CTTAAG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 86
AluBI AGCT 4 cut(s) 151, 173, 231, 242
AluI AGCT 4 cut(s) 151, 173, 231, 242
ApeKI GCWGC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 76
BanI GGYRCC 1 cut(s) 97
BbvI GCAGC 1 cut(s) 160
BccI CCATC 2 cut(s) 109, 217
BfrI CTTAAG 1 cut(s) 152
BisI GCNGC 1 cut(s) 174
BlpI GCTNAGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 99
Bpu1102I GCTNAGC 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 2 cut(s) 207, 246
BseXI GCAGC 1 cut(s) 160
BshNI GGYRCC 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 107
Bsp143I GATC 1 cut(s) 138
Bsp1720I GCTNAGC 1 cut(s) 232
BspCNI CTCAG 2 cut(s) 208, 245
BspLI GGNNCC 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 97
BspTI CTTAAG 1 cut(s) 152
BssMI GATC 1 cut(s) 138
BstAFI CTTAAG 1 cut(s) 152
BstDEI CTNAG 2 cut(s) 216, 232
BstKTI GATC 1 cut(s) 141
BstMBI GATC 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 160
CviAII CATG 2 cut(s) 47, 130
CviJI RGCY 6 cut(s) 9, 151, 173, 193, 231, 242
CviKI_1 RGCY 6 cut(s) 9, 151, 173, 193, 231, 242
DdeI CTNAG 2 cut(s) 216, 232
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 153
FaeI CATG 2 cut(s) 50, 133
FaiI YATR 2 cut(s) 48, 131
FatI CATG 2 cut(s) 46, 129
Fnu4HI GCNGC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 174
Hin1II CATG 2 cut(s) 50, 133
HinfI GANTC 1 cut(s) 205
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 2 cut(s) 22, 56
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 2 cut(s) 22, 56
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 27
HpyF3I CTNAG 2 cut(s) 216, 232
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 2 cut(s) 50, 133
Kzo9I GATC 1 cut(s) 138
LpnPI CCDG 2 cut(s) 93, 174
Lsp1109I GCAGC 1 cut(s) 160
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 2 cut(s) 122, 163
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MluCI AATT 1 cut(s) 38
MnlI CCTC 3 cut(s) 109, 178, 204
MseI TTAA 2 cut(s) 41, 153
MslI CAYNNNNRTG 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 173
MspCI CTTAAG 1 cut(s) 152
NdeII GATC 1 cut(s) 138
NlaIII CATG 2 cut(s) 50, 133
NlaIV GGNNCC 1 cut(s) 99
NmuCI GTSAC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 205
PflMI CCANNNNNTGG 1 cut(s) 107
PkrI GCNGC 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 2 cut(s) 41, 153
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 1 cut(s) 138
SetI ASST 7 cut(s) 30, 92, 153, 163, 175, 233, 244
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 1 cut(s) 38
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 183, 203
TasI AATT 1 cut(s) 38
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 2 cut(s) 41, 153
Tru9I TTAA 2 cut(s) 41, 153
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 1 cut(s) 63
Van91I CCANNNNNTGG 1 cut(s) 107
Vha464I CTTAAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.