Prupe.3G100900_v2.0.a1

H ACA ribonucleoprotein complex subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Reverse (-)
7740788 .. 7742805
2018 bp
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UTR
Exon/CDS
Intron
Prupe.3G100900.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 228 bp
ATGATTTGGACAAAGACTTCATTAACCCCGACTCCTTCCATGGACACCTCTCAGTGGCCTATCCTTCTCAAAACCTATGACCGCCTCAATGTTCGAACTGCACACTACACCCTAGTGGCGGTTCTAGAATTTGAAAGTCGATTGGGCAAAATTTATATATTAAACTCTATGATACGAGTGAATTTTATTAATAAACATAAAAAGATACACATAGTTCTCAACACTTGA

Protein Analysis

76

Amino Acids

8.82

Weight (kDa)

10.09

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 82, 119
AcsI RAATTY 3 cut(s) 128, 150, 181
AfiI CCNNNNNNNGG 2 cut(s) 54, 118
AgsI TTSAA 1 cut(s) 134
AleI CACNNNNGTG 1 cut(s) 113
AoxI GGCC 1 cut(s) 56
ApoI RAATTY 3 cut(s) 128, 150, 181
AseI ATTAAT 1 cut(s) 189
AsuII TTCGAA 1 cut(s) 94
BfaI CTAG 2 cut(s) 113, 125
Bpu14I TTCGAA 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 39
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 118
BseDI CCNNGG 1 cut(s) 39
BseLI CCNNNNNNNGG 2 cut(s) 54, 118
BseMII CTCAG 1 cut(s) 65
BsgI GTGCAG 1 cut(s) 84
BshFI GGCC 1 cut(s) 58
BslI CCNNNNNNNGG 2 cut(s) 54, 118
BsnI GGCC 1 cut(s) 58
Bsp119I TTCGAA 1 cut(s) 94
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 2 cut(s) 82, 119
BspANI GGCC 1 cut(s) 58
BspCNI CTCAG 1 cut(s) 64
BspT104I TTCGAA 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 39
BstBI TTCGAA 1 cut(s) 94
BstDEI CTNAG 1 cut(s) 51
BstDSI CCRYGG 1 cut(s) 39
BsuRI GGCC 1 cut(s) 58
BtgI CCRYGG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 59
CviAII CATG 1 cut(s) 40
CviJI RGCY 1 cut(s) 58
CviKI_1 RGCY 1 cut(s) 58
DdeI CTNAG 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 1 cut(s) 43
FaiI YATR 7 cut(s) 41, 78, 156, 158, 170, 198, 212
FatI CATG 1 cut(s) 39
FspBI CTAG 2 cut(s) 113, 125
HaeIII GGCC 1 cut(s) 58
Hin1II CATG 1 cut(s) 43
HinfI GANTC 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 125
HpyAV CCTTC 2 cut(s) 45, 74
HpyCH4V TGCA 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 1 cut(s) 43
MaeI CTAG 2 cut(s) 113, 125
MluCI AATT 3 cut(s) 128, 150, 181
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 2 cut(s) 58, 95
MseI TTAA 3 cut(s) 23, 161, 189
MslI CAYNNNNRTG 1 cut(s) 113
NcoI CCATGG 1 cut(s) 39
NlaIII CATG 1 cut(s) 43
NspV TTCGAA 1 cut(s) 94
OliI CACNNNNGTG 1 cut(s) 113
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PshBI ATTAAT 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 3 cut(s) 23, 161, 189
SchI GAGTC 1 cut(s) 25
SetI ASST 2 cut(s) 50, 77
SfuI TTCGAA 1 cut(s) 94
SgeI CNNG 5 cut(s) 40, 52, 125, 137, 188
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 3 cut(s) 128, 150, 181
SsiI CCGC 2 cut(s) 82, 119
SspMI CTAG 2 cut(s) 113, 125
StyI CCWWGG 1 cut(s) 39
TaqI TCGA 2 cut(s) 94, 139
TasI AATT 3 cut(s) 128, 150, 181
Tru1I TTAA 3 cut(s) 23, 161, 189
Tru9I TTAA 3 cut(s) 23, 161, 189
TscAI CASTG 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 9
TspRI CASTG 1 cut(s) 59
VspI ATTAAT 1 cut(s) 189
XapI RAATTY 3 cut(s) 128, 150, 181
XbaI TCTAGA 1 cut(s) 124
XspI CTAG 2 cut(s) 113, 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.