Prupe.3G106500_v2.0.a1

fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Forward (+)
8455183 .. 8457231
2049 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G106500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1908 bp
ATGTATTTTATCAGGCTTAACACACCCATTACTTATATCTTCCTCTCTTTCTTTTTCTTCTTCTTTTCTTCATCGTCTGCTTTCAACATCACTGAAGTTCTGAACAAGTACCCGGACTTCAGCATCTTCAACGACTACCTGACCCGAACCCAAGTTTCCAGGCAGATCAATGAGCACCCAGTCGTGACGATTCTCGCGGTCAACAATACCGCCATGTCCTCATTAGTAGGAAAATCAATGGACCTCATCAACCAAGTGATGCGCATCCACGTATTTTTGGACTACTATACCCTCAATAAGTTGAAGAGCTTGCCATCTTCGCAGCCTTCCCAAGTGACCACACTGCTCGAATCTCCTGACCAACAACGCTACTTGAACATCACAAATGTCGGCACCCTCTCAATTGTTTCGGGTGCTGGTTCTGAGAAAGTAGGTGTCCTTCGAGATATTTATCCTGACGACATTTATAAGACATCAATTGTGGAAGTTAGCAATGTAATTATGCCTTCAAGCTTATTAACTACTTCACCCTCATCACCTTCTCCGCCATCTTCAATGCCTTCTTTGCCATCTTCGGTACCTTCTCCGCCCTCATCAGTGCCTTCTCTGCCATCTTCGGTACCTTCTCCGCCCTCATCAGTGCCTTCTTCATCCACTTTCAACATCACCAAAACTCTATTCGACTATCCAGATTTCACCACATTCAATACCTACCTCACCGACACCCAAGTTTGTGACCAAATCAATGCAGGCTCCTCCGTCACGGTCCTTGCAGTTAACAATGCCGCCATGTCCTCTTTAGTAGGAAAATCAGCCGACATTAAGAAGAAGGTGCTAAGCCTCCATGTTATTACAGGCTACTATACCCTCAACAAATTCAGGAGCTTGCCAAATTCGCAAACAACCCAATTGAACACAATGCTCCAAGCTTCTTTCCAATCAGTAGGCTTTCAAGGCTTGTTGAACGTCACAAATGGGGACACTGTCTCACTTGTTTCCGCTTCTGGTTCTGAAAAAGCACAGCTAGTTAAAGATATATACACTGATGATTTCAAAATATCAGTGGTGGAAATTAGTAATCTAATTGTTCCTTCAGACTCACCAACTTCACCGCCTTCATCTCCTTCTGCATCCACTTCATTGCCTCCTTCATCCACTCCTTCATCATCTCCCTTTGACATCACCAGAACTCTAACTGGAAGCCCTGATTTCAACCTCTTCAGCACCTACCTTACTCAAACCCAAGTAGCTAACCAGATCAATGAACGTAAAACCATGACAATCTTCGTTGTCAACAATGGTGCCATGACCTCTTTAGTAGACAAACCAATGGAGATTAAGAAAAAGGTTTTGAGTCTCCACGTTATCATGGACTACTATACCGTCCAAAAGTTCCACAACTTGCCGGTTTCGCAACCCACTCGTATAAACACACTGCTTCAAGTTACTGACCAGCCAAGTGCCCAACAAGGCTTTGTGAACGTCACAAATGGGGACACCATCTCGATTGTTTCAGCCGCTGGTTCAGACCAAGCAGTCGTAGTTCAAGATATTGCTGCGGATGAAAGTTCTTACATATCAGTAGTGCAAATTAGTAATCTAATATTGCCTTCAAGCTTAACTGCGCCAACCCCATCACCTTCTTCAAACCCAGGTAAGTTGCGATCTGCAGCGCCAGTCAAGGCTCCAACTAGCAGCATTGCAGCCGCACCAAAGGTAGGAGACACTCCATCTAGCAGCATTGCAGCCGCACCAGTATCCAATGCACCAATTACCTCAATTGCCAGCGGACCAATTGGAGCTGCCCTAGCTCCGCATGTATCTGCAGTCTCTTCTATTGAATGTGCTTCTATTGTAACTATGATTTTGGTGTCGGCTTTTTCTTTGGCTTCCGTGATCGTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

636

Amino Acids

67.56

Weight (kDa)

5.89

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AasI GACNNNNNNGTC 1 cut(s) 1535
Acc16I TGCGCA 1 cut(s) 263
Acc65I GGTACC 2 cut(s) 577, 619
AccB1I GGYRCC 4 cut(s) 392, 577, 619, 1301
AccI GTMKAC 1 cut(s) 1320
AccII CGCG 1 cut(s) 197
AcsI RAATTY 2 cut(s) 875, 892
AcuI CTGAAG 4 cut(s) 103, 114, 1077, 1204
AfaI GTAC 3 cut(s) 110, 579, 621
AfiI CCNNNNNNNGG 1 cut(s) 1718
AjnI CCWGG 2 cut(s) 158, 1651
AjuI GAANNNNNNNTTGG 2 cut(s) 662, 694
AluBI AGCT 9 cut(s) 309, 513, 885, 929, 1024, 1250, 1617, 1802, 1811
AluI AGCT 9 cut(s) 309, 513, 885, 929, 1024, 1250, 1617, 1802, 1811
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 4 cut(s) 991, 1361, 1716, 1834
AlwNI CAGNNNCTG 1 cut(s) 1520
ApeKI GCWGC 8 cut(s) 322, 1556, 1670, 1695, 1703, 1737, 1745, 1802
ApoI RAATTY 2 cut(s) 875, 892
Asp718I GGTACC 2 cut(s) 577, 619
AspLEI GCGC 3 cut(s) 264, 1627, 1675
AspS9I GGNCC 3 cut(s) 241, 766, 1790
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 9 cut(s) 519, 528, 658, 688, 709, 1092, 1101, 1174, 1629
AvaII GGWCC 3 cut(s) 241, 766, 1790
BaeGI GKGCMC 1 cut(s) 1465
BanI GGYRCC 4 cut(s) 392, 577, 619, 1301
BarI GAAGNNNNNNTAC 4 cut(s) 101, 133, 423, 455
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 8 cut(s) 334, 1543, 1682, 1707, 1715, 1749, 1757, 1789
BccI CCATC 7 cut(s) 322, 556, 577, 619, 1508, 1642, 1738
BcgI CGANNNNNNTGC 2 cut(s) 1403, 1437
BciT130I CCWGG 2 cut(s) 160, 1653
BciVI GTATCC 1 cut(s) 1768
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 4 cut(s) 991, 1361, 1716, 1834
BfaI CTAG 4 cut(s) 1025, 1692, 1734, 1808
BfmI CTRYAG 2 cut(s) 1668, 1824
BfoI RGCGCY 1 cut(s) 1676
BfuI GTATCC 1 cut(s) 1768
BlpI GCTNAGC 1 cut(s) 836
Bme1390I CCNGG 3 cut(s) 113, 160, 1653
Bme18I GGWCC 3 cut(s) 241, 766, 1790
BmgT120I GGNCC 3 cut(s) 241, 766, 1790
BmiI GGNNCC 6 cut(s) 394, 579, 621, 754, 1303, 1686
BmrFI CCNGG 3 cut(s) 113, 160, 1653
BmrI ACTGGG 1 cut(s) 173
BmsI GCATC 4 cut(s) 132, 249, 273, 1139
BmuI ACTGGG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 836
BpuMI CCSGG 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 271
BsaBI GATNNNNATC 2 cut(s) 263, 450
BsaJI CCNNGG 1 cut(s) 1651
Bsc4I CCNNNNNNNGG 1 cut(s) 1718
Bse118I RCCGGY 1 cut(s) 1405
Bse1I ACTGG 4 cut(s) 179, 1201, 1676, 1754
Bse3DI GCAATG 4 cut(s) 499, 1139, 1698, 1740
Bse8I GATNNNNATC 2 cut(s) 263, 450
BseBI CCWGG 2 cut(s) 160, 1653
BseDI CCNNGG 1 cut(s) 1651
BseGI GGATG 5 cut(s) 264, 650, 1130, 1151, 1567
BseJI GATNNNNATC 2 cut(s) 263, 450
BseLI CCNNNNNNNGG 1 cut(s) 1718
BseMI GCAATG 4 cut(s) 499, 1139, 1698, 1740
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 4 cut(s) 179, 1201, 1676, 1754
BseRI GAGGAG 1 cut(s) 745
BseSI GKGCMC 1 cut(s) 1465
BseXI GCAGC 8 cut(s) 334, 1543, 1682, 1707, 1715, 1749, 1757, 1789
Bsh1236I CGCG 1 cut(s) 197
BshNI GGYRCC 4 cut(s) 392, 577, 619, 1301
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 2 cut(s) 113, 1406
BslFI GGGAC 2 cut(s) 992, 1508
BslI CCNNNNNNNGG 1 cut(s) 1718
BsmAI GTCTC 4 cut(s) 991, 1361, 1716, 1834
BsmFI GGGAC 2 cut(s) 992, 1508
Bsp1286I GDGCHC 2 cut(s) 177, 1465
Bsp143I GATC 4 cut(s) 165, 1257, 1664, 1896
Bsp1720I GCTNAGC 1 cut(s) 836
BspCNI CTCAG 1 cut(s) 415
BspFNI CGCG 1 cut(s) 197
BspLI GGNNCC 6 cut(s) 394, 579, 621, 754, 1303, 1686
BspMAI CTGCAG 2 cut(s) 1672, 1828
BspQI GCTCTTC 1 cut(s) 299
BspT107I GGYRCC 4 cut(s) 392, 577, 619, 1301
BsrDI GCAATG 4 cut(s) 499, 1139, 1698, 1740
BsrFI RCCGGY 1 cut(s) 1405
BsrI ACTGG 4 cut(s) 179, 1201, 1676, 1754
BssAI RCCGGY 1 cut(s) 1405
BssECI CCNNGG 1 cut(s) 1651
BssMI GATC 4 cut(s) 165, 1257, 1664, 1896
Bst2UI CCWGG 2 cut(s) 160, 1653
Bst4CI ACNGT 3 cut(s) 766, 985, 1384
Bst6I CTCTTC 3 cut(s) 299, 1223, 1837
BstBAI YACGTR 1 cut(s) 271
BstC8I GCNNGC 4 cut(s) 311, 751, 887, 1786
BstDEI CTNAG 2 cut(s) 423, 836
BstF5I GGATG 5 cut(s) 264, 650, 1130, 1151, 1567
BstFNI CGCG 1 cut(s) 197
BstH2I RGCGCY 1 cut(s) 1676
BstHHI GCGC 3 cut(s) 264, 1627, 1675
BstKTI GATC 4 cut(s) 168, 1260, 1667, 1899
BstMAI GTCTC 4 cut(s) 991, 1361, 1716, 1834
BstMBI GATC 4 cut(s) 165, 1257, 1664, 1896
BstMWI GCNNNNNNNGC 7 cut(s) 319, 565, 607, 895, 954, 1411, 1808
BstNI CCWGG 2 cut(s) 160, 1653
BstNSI RCATGY 1 cut(s) 1820
BstSCI CCNGG 3 cut(s) 111, 158, 1651
BstSFI CTRYAG 2 cut(s) 1668, 1824
BstSLI GKGCMC 1 cut(s) 1465
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 8 cut(s) 334, 1543, 1682, 1707, 1715, 1749, 1757, 1789
BsuI GTATCC 1 cut(s) 1768
BtsCI GGATG 5 cut(s) 264, 650, 1130, 1151, 1567
BtsI GCAGTG 2 cut(s) 341, 1433
BtsIMutI CAGTG 8 cut(s) 90, 341, 603, 645, 981, 1041, 1068, 1433
Cac8I GCNNGC 4 cut(s) 311, 751, 887, 1786
CaiI CAGNNNCTG 1 cut(s) 1520
CfoI GCGC 3 cut(s) 264, 1627, 1675
Cfr10I RCCGGY 1 cut(s) 1405
Cfr13I GGNCC 3 cut(s) 241, 766, 1790
Csp6I GTAC 3 cut(s) 109, 578, 620
CviAII CATG 7 cut(s) 214, 790, 845, 1276, 1306, 1369, 1817
CviQI GTAC 3 cut(s) 109, 578, 620
DdeI CTNAG 2 cut(s) 423, 836
DpnI GATC 4 cut(s) 167, 1259, 1666, 1898
DpnII GATC 4 cut(s) 165, 1257, 1664, 1896
DrdI GACNNNNNNGTC 1 cut(s) 1535
DseDI GACNNNNNNGTC 1 cut(s) 1535
Eam1104I CTCTTC 3 cut(s) 299, 1223, 1837
EarI CTCTTC 3 cut(s) 299, 1223, 1837
EciI GGCGGA 3 cut(s) 534, 576, 618
Eco47I GGWCC 3 cut(s) 241, 766, 1790
Eco57I CTGAAG 4 cut(s) 103, 114, 1077, 1204
EcoRII CCWGG 2 cut(s) 158, 1651
FaeI CATG 7 cut(s) 217, 793, 848, 1279, 1309, 1372, 1820
FaqI GGGAC 2 cut(s) 992, 1508
FatI CATG 7 cut(s) 213, 789, 844, 1275, 1305, 1368, 1816
FblI GTMKAC 1 cut(s) 1320
FokI GGATG 5 cut(s) 251, 637, 1117, 1138, 1574
FspAI RTGCGCAY 1 cut(s) 263
FspBI CTAG 4 cut(s) 1025, 1692, 1734, 1808
FspI TGCGCA 1 cut(s) 263
GlaI GCGC 3 cut(s) 263, 1626, 1674
HaeII RGCGCY 1 cut(s) 1676
HapII CCGG 2 cut(s) 113, 1406
HhaI GCGC 3 cut(s) 264, 1627, 1675
Hin1II CATG 7 cut(s) 217, 793, 848, 1279, 1309, 1372, 1820
Hin6I GCGC 3 cut(s) 262, 1625, 1673
HinP1I GCGC 3 cut(s) 262, 1625, 1673
HincII GTYRAC 3 cut(s) 202, 778, 1294
HindII GTYRAC 3 cut(s) 202, 778, 1294
HindIII AAGCTT 3 cut(s) 511, 927, 1615
HinfI GANTC 4 cut(s) 190, 350, 1097, 1354
HpaI GTTAAC 1 cut(s) 778
HpaII CCGG 2 cut(s) 113, 1406
HphI GGTGA 9 cut(s) 519, 528, 658, 688, 709, 1092, 1101, 1174, 1629
Hpy166II GTNNAC 5 cut(s) 202, 778, 1294, 1321, 1480
Hpy188I TCNGA 5 cut(s) 102, 424, 1012, 1096, 1528
Hpy188III TCNNGA 9 cut(s) 184, 356, 443, 455, 689, 880, 1504, 1547, 1900
Hpy8I GTNNAC 5 cut(s) 202, 778, 1294, 1321, 1480
HpyCH4III ACNGT 3 cut(s) 766, 985, 1384
HpyCH4IV ACGT 5 cut(s) 270, 966, 1267, 1362, 1482
HpyCH4V TGCA 9 cut(s) 749, 773, 1130, 1588, 1670, 1703, 1745, 1766, 1826
HpyF10VI GCNNNNNNNGC 7 cut(s) 319, 565, 607, 895, 954, 1411, 1808
HpyF3I CTNAG 2 cut(s) 423, 836
HpySE526I ACGT 5 cut(s) 270, 966, 1267, 1362, 1482
Hsp92II CATG 7 cut(s) 217, 793, 848, 1279, 1309, 1372, 1820
HspAI GCGC 3 cut(s) 262, 1625, 1673
KpnI GGTACC 2 cut(s) 581, 623
KspAI GTTAAC 1 cut(s) 778
Kzo9I GATC 4 cut(s) 165, 1257, 1664, 1896
LguI GCTCTTC 1 cut(s) 299
LmnI GCTCC 6 cut(s) 758, 882, 927, 1690, 1799, 1816
Lsp1109I GCAGC 8 cut(s) 334, 1543, 1682, 1707, 1715, 1749, 1757, 1789
LweI GCATC 4 cut(s) 132, 249, 273, 1139
MaeI CTAG 4 cut(s) 1025, 1692, 1734, 1808
MaeII ACGT 5 cut(s) 270, 966, 1267, 1362, 1482
MaeIII GTNAC 8 cut(s) 184, 334, 734, 760, 967, 1444, 1483, 1855
MalI GATC 4 cut(s) 167, 1259, 1666, 1898
MboI GATC 4 cut(s) 165, 1257, 1664, 1896
MfeI CAATTG 5 cut(s) 402, 477, 908, 1779, 1794
MhlI GDGCHC 2 cut(s) 177, 1465
MlyI GAGTC 2 cut(s) 1091, 1363
MmeI TCCRAC 1 cut(s) 1712
MseI TTAA 7 cut(s) 18, 518, 777, 822, 1029, 1338, 1619
MspA1I CMGCKG 2 cut(s) 1520, 1788
MspI CCGG 2 cut(s) 113, 1406
MspR9I CCNGG 3 cut(s) 113, 160, 1653
MunI CAATTG 5 cut(s) 402, 477, 908, 1779, 1794
MvaI CCWGG 2 cut(s) 160, 1653
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 7 cut(s) 319, 565, 607, 895, 954, 1411, 1808
NciI CCSGG 1 cut(s) 113
NdeII GATC 4 cut(s) 165, 1257, 1664, 1896
NlaIII CATG 7 cut(s) 217, 793, 848, 1279, 1309, 1372, 1820
NlaIV GGNNCC 6 cut(s) 394, 579, 621, 754, 1303, 1686
NmuCI GTSAC 6 cut(s) 184, 334, 734, 760, 967, 1483
NsbI TGCGCA 1 cut(s) 263
NspI RCATGY 1 cut(s) 1820
PciSI GCTCTTC 1 cut(s) 299
PfeI GAWTC 2 cut(s) 190, 350
PflFI GACNNNGTC 1 cut(s) 983
PleI GAGTC 2 cut(s) 1091, 1362
PpsI GAGTC 2 cut(s) 1091, 1362
Ppu21I YACGTR 1 cut(s) 271
PsiI TTATAA 1 cut(s) 468
Psp6I CCWGG 2 cut(s) 158, 1651
PspGI CCWGG 2 cut(s) 158, 1651
PspN4I GGNNCC 6 cut(s) 394, 579, 621, 754, 1303, 1686
PspPI GGNCC 3 cut(s) 241, 766, 1790
PstI CTGCAG 2 cut(s) 1672, 1828
PstNI CAGNNNCTG 1 cut(s) 1520
PsyI GACNNNGTC 1 cut(s) 983
RsaI GTAC 3 cut(s) 110, 579, 621
RsaNI GTAC 3 cut(s) 109, 578, 620
SapI GCTCTTC 1 cut(s) 299
SaqAI TTAA 7 cut(s) 18, 518, 777, 822, 1029, 1338, 1619
Sau3AI GATC 4 cut(s) 165, 1257, 1664, 1896
Sau96I GGNCC 3 cut(s) 241, 766, 1790
SchI GAGTC 2 cut(s) 1091, 1363
ScrFI CCNGG 3 cut(s) 113, 160, 1653
SduI GDGCHC 2 cut(s) 177, 1465
SfaNI GCATC 4 cut(s) 132, 249, 273, 1139
SfcI CTRYAG 2 cut(s) 1668, 1824
SinI GGWCC 3 cut(s) 241, 766, 1790
SspI AATATT 1 cut(s) 1605
SspMI CTAG 4 cut(s) 1025, 1692, 1734, 1808
StyD4I CCNGG 3 cut(s) 111, 158, 1651
TaaI ACNGT 3 cut(s) 766, 985, 1384
TaiI ACGT 5 cut(s) 273, 969, 1270, 1365, 1485
TaqI TCGA 4 cut(s) 348, 442, 681, 1505
TauI GCSGC 4 cut(s) 788, 1520, 1709, 1751
TfiI GAWTC 2 cut(s) 190, 350
Tru1I TTAA 7 cut(s) 18, 518, 777, 822, 1029, 1338, 1619
Tru9I TTAA 7 cut(s) 18, 518, 777, 822, 1029, 1338, 1619
TscAI CASTG 8 cut(s) 97, 348, 603, 645, 988, 1048, 1068, 1440
TseFI GTSAC 6 cut(s) 184, 334, 734, 760, 967, 1483
TseI GCWGC 8 cut(s) 322, 1556, 1670, 1695, 1703, 1737, 1745, 1802
Tsp45I GTSAC 6 cut(s) 184, 334, 734, 760, 967, 1483
TspDTI ATGAA 8 cut(s) 60, 639, 1107, 1128, 1140, 1152, 1278, 1578
TspGWI ACGGA 2 cut(s) 748, 1882
TspRI CASTG 8 cut(s) 97, 348, 603, 645, 988, 1048, 1068, 1440
Tth111I GACNNNGTC 1 cut(s) 983
VpaK11BI GGWCC 3 cut(s) 241, 766, 1790
XapI RAATTY 2 cut(s) 875, 892
XceI RCATGY 1 cut(s) 1820
XmiI GTMKAC 1 cut(s) 1320
XspI CTAG 4 cut(s) 1025, 1692, 1734, 1808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.