Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

8678666 .. 8680398

Gene Structure 1733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G108100.1_v2.0.a1.CDS.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTTTGTTGGGGATTCACTGAGTTTGAACCAATGGCTGTCGCTCACTTGTATGCTTCATACATCAAACCCACATGCCCAATATAAACTGTTCAAGACTGGAGGGCTATCTACATTCACATTCCCAGCATACAAAATCAAGGTCATGATCTCTCGAAATGCATTTCTGGTTGATACAATAGCCACAACTGCTGGCCGAGTTCTTAAACTTGACTCTATTGAAAGTGGGAAAATGTGGAAGGAAATTGATGATCTTATTCAAGAAGGGGACCGTATGTTCAAAGATATGGATCGCTTGGTTGCATATGAAAAAGGGCTCAAGACATGGGCAAGATGGATCGACAACAATTTGGACACAACAAAAACAAGAGTTTTCTTTCAGGGTGTTCCCCCAGATCATAATAAAGGTTCACATCGAGCACAGCTAGTAGTAGAAAGAGTGCTGCGTTCTATGAAAAGCCCTGTTCATCTGCTAAATGTCACAACTCTTTCACAACTAAGAATAGATGGGCATCCATCTGTCCACTGGTGTCTGGCCGGAGTTCCTGATACTTGGAATGTGCTTCTATATGCAGCTCTCACACAAAGAAAAACCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

200

Amino Acids

22.68

Weight (kDa)

9.51

Isoelectric Point (pI)

29.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	297, 344
AcoI	YGGCCR	2 cut(s)	193, 534
AgsI	TTSAA	5 cut(s)	28, 94, 221, 260, 280
AloI	GAACNNNNNNTCC	2 cut(s)	260, 292
AluBI	AGCT	2 cut(s)	424, 575
AluI	AGCT	2 cut(s)	424, 575
Alw21I	GWGCWC	1 cut(s)	421
AlwI	GGATC	2 cut(s)	297, 344
AoxI	GGCC	2 cut(s)	193, 534
ApeKI	GCWGC	2 cut(s)	442, 572
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
AspS9I	GGNCC	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	421
BbvI	GCAGC	2 cut(s)	429, 584
BccI	CCATC	3 cut(s)	327, 500, 523
BfaI	CTAG	1 cut(s)	425
BisI	GCNGC	2 cut(s)	443, 573
BlsI	GCNGC	2 cut(s)	444, 574
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	269
BmsI	GCATC	1 cut(s)	520
BpmI	CTGGAG	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	302
BsaBI	GATNNNNATC	2 cut(s)	288, 510
Bse1I	ACTGG	2 cut(s)	103, 530
Bse8I	GATNNNNATC	2 cut(s)	288, 510
BseGI	GGATG	1 cut(s)	511
BseJI	GATNNNNATC	2 cut(s)	288, 510
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	2 cut(s)	103, 530
BseXI	GCAGC	2 cut(s)	429, 584
BseYI	CCCAGC	1 cut(s)	124
BshFI	GGCC	2 cut(s)	195, 536
BsiHKAI	GWGCWC	1 cut(s)	421
BsiSI	CCGG	1 cut(s)	537
BslFI	GGGAC	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	195, 536
Bsp1286I	GDGCHC	2 cut(s)	318, 421
Bsp143I	GATC	5 cut(s)	147, 250, 289, 336, 394
BspANI	GGCC	2 cut(s)	195, 536
BspCNI	CTCAG	1 cut(s)	12
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	269
BspPI	GGATC	2 cut(s)	297, 344
BsrI	ACTGG	2 cut(s)	103, 530
BssMI	GATC	5 cut(s)	147, 250, 289, 336, 394
Bst4CI	ACNGT	2 cut(s)	90, 272
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	2 cut(s)	20, 497
BstF5I	GGATG	1 cut(s)	511
BstKTI	GATC	5 cut(s)	150, 253, 292, 339, 397
BstMBI	GATC	5 cut(s)	147, 250, 289, 336, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	429, 584
BsuRI	GGCC	2 cut(s)	195, 536
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	2 cut(s)	17, 523
Cac8I	GCNNGC	1 cut(s)	193
CciI	TCATGA	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	268
CviAII	CATG	3 cut(s)	74, 145, 324
CviJI	RGCY	9 cut(s)	37, 106, 182, 195, 316, 424, 459, 536, 575
CviKI_1	RGCY	9 cut(s)	37, 106, 182, 195, 316, 424, 459, 536, 575
DdeI	CTNAG	2 cut(s)	20, 497
DpnI	GATC	5 cut(s)	149, 252, 291, 338, 396
DpnII	GATC	5 cut(s)	147, 250, 289, 336, 394
EaeI	YGGCCR	2 cut(s)	193, 534
Eco24I	GRGCYC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	268
EcoT22I	ATGCAT	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	318
FaeI	CATG	3 cut(s)	77, 148, 327
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	3 cut(s)	73, 144, 323
FauNDI	CATATG	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	443, 573
FokI	GGATG	1 cut(s)	498
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	2 cut(s)	443, 573
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	2 cut(s)	443, 573
GsaI	CCCAGC	1 cut(s)	128
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	195, 536
HapII	CCGG	1 cut(s)	537
Hin1II	CATG	3 cut(s)	77, 148, 327
HinfI	GANTC	2 cut(s)	14, 212
HpaII	CCGG	1 cut(s)	537
Hpy166II	GTNNAC	2 cut(s)	410, 523
Hpy188III	TCNNGA	6 cut(s)	94, 145, 153, 260, 319, 545
Hpy8I	GTNNAC	2 cut(s)	410, 523
HpyAV	CCTTC	2 cut(s)	232, 257
HpyCH4III	ACNGT	2 cut(s)	90, 272
HpyCH4V	TGCA	3 cut(s)	161, 302, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	2 cut(s)	20, 497
Hsp92II	CATG	3 cut(s)	77, 148, 327
Kzo9I	GATC	5 cut(s)	147, 250, 289, 336, 394
Lsp1109I	GCAGC	2 cut(s)	429, 584
LweI	GCATC	1 cut(s)	520
MaeI	CTAG	1 cut(s)	425
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	5 cut(s)	149, 252, 291, 338, 396
MboI	GATC	5 cut(s)	147, 250, 289, 336, 394
MhlI	GDGCHC	2 cut(s)	318, 421
MluCI	AATT	2 cut(s)	243, 346
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	1 cut(s)	95
Mph1103I	ATGCAT	1 cut(s)	163
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	50
MspI	CCGG	1 cut(s)	537
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	5 cut(s)	147, 250, 289, 336, 394
NlaIII	CATG	3 cut(s)	77, 148, 327
NlaIV	GGNNCC	1 cut(s)	269
NmeAIII	GCCGAG	1 cut(s)	221
NmuCI	GTSAC	1 cut(s)	478
NsiI	ATGCAT	1 cut(s)	163
NspI	RCATGY	1 cut(s)	77
PagI	TCATGA	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	2 cut(s)	444, 574
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	269
PspPI	GGNCC	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	443, 573
Sau3AI	GATC	5 cut(s)	147, 250, 289, 336, 394
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	1 cut(s)	206
SduI	GDGCHC	2 cut(s)	318, 421
SetI	ASST	4 cut(s)	144, 409, 426, 577
SfaNI	GCATC	1 cut(s)	520
SinI	GGWCC	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	2 cut(s)	243, 346
SspMI	CTAG	1 cut(s)	425
TaaI	ACNGT	2 cut(s)	90, 272
TaqI	TCGA	3 cut(s)	154, 339, 415
TasI	AATT	2 cut(s)	243, 346
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	2 cut(s)	24, 530
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	2 cut(s)	442, 572
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	4 cut(s)	47, 321, 455, 467
TspRI	CASTG	2 cut(s)	24, 530
VpaK11BI	GGWCC	1 cut(s)	268
XceI	RCATGY	1 cut(s)	77
XcmI	CCANNNNNNNNNTGG	1 cut(s)	522
XspI	CTAG	1 cut(s)	425
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.