Prupe.3G110500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Reverse (-)
9077469 .. 9082341
4873 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G110500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 486 bp
ATGAATCTTGCCAAATATAAAATCCCATTGCGCAATGCTGAGGAGGTACTCAATACCCACAATGATGCCAATAGGAAATCTGGAACTAAAAAGAAGCTTTGCATCAAGGTATGTCCAGCTGGTCACAAGTATGAGGTGGTGAATTCGTGTAACGGATTGCTTTGCTTGTCTAAACCATTCATCAATGACGCTGTTGTTGTGTGCAACCCAATAACCGGTGCAGAATACAAGCTGCTGGGAGGGACTAGAGCTCTGTCTTTGGAGGACGAACAAATTCTCAGTTGCTTTCCAAAGGAAGTGAAGAAGGAAATAACCTCAGAGGTGGTGTCGATGTCGTATATAAAGCAACGTGAACTCGAAGAGGCCTGTAGAGTCAAAAAACCATTTTGTGAACGGCTTGTGACAAGATTGCAAGCTGCTGGGAGAGACAGGAGCTCTTTTCTTTTTTGGTGGCAGGAAATAGGGTCTGGTATCAACGTCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

162

Amino Acids

18.14

Weight (kDa)

9.12

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 32
AcsI RAATTY 2 cut(s) 142, 273
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 1 cut(s) 215
AgeI ACCGGT 1 cut(s) 215
AluBI AGCT 6 cut(s) 97, 119, 232, 251, 416, 435
AluI AGCT 6 cut(s) 97, 119, 232, 251, 416, 435
Alw21I GWGCWC 2 cut(s) 253, 437
Alw26I GTCTC 1 cut(s) 420
AoxI GGCC 1 cut(s) 363
ApeKI GCWGC 2 cut(s) 232, 416
ApoI RAATTY 2 cut(s) 142, 273
AsiGI ACCGGT 1 cut(s) 215
Asp700I GAANNNNTTC 1 cut(s) 273
AspLEI GCGC 1 cut(s) 33
AsuHPI GGTGA 1 cut(s) 151
BanII GRGCYC 2 cut(s) 253, 437
Bbv12I GWGCWC 2 cut(s) 253, 437
BbvCI CCTCAGC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 219, 403
BceAI ACGGC 1 cut(s) 410
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 1 cut(s) 246
BfmI CTRYAG 1 cut(s) 367
BisI GCNGC 2 cut(s) 233, 417
BlsI GCNGC 2 cut(s) 234, 418
BmsI GCATC 2 cut(s) 55, 111
Bpu10I CCTNAGC 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 215
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse118I RCCGGY 1 cut(s) 215
Bse3DI GCAATG 2 cut(s) 26, 40
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMI GCAATG 2 cut(s) 26, 40
BseMII CTCAG 3 cut(s) 30, 292, 330
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 2 cut(s) 219, 403
BseYI CCCAGC 2 cut(s) 235, 419
BsgI GTGCAG 1 cut(s) 240
BshFI GGCC 1 cut(s) 365
BshTI ACCGGT 1 cut(s) 215
BsiHKAI GWGCWC 2 cut(s) 253, 437
BsiSI CCGG 1 cut(s) 216
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 420
BsmFI GGGAC 1 cut(s) 256
BsnI GGCC 1 cut(s) 365
Bsp1286I GDGCHC 2 cut(s) 253, 437
BspANI GGCC 1 cut(s) 365
BspCNI CTCAG 3 cut(s) 31, 291, 329
BsrDI GCAATG 2 cut(s) 26, 40
BsrFI RCCGGY 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 3 cut(s) 39, 278, 316
BstHHI GCGC 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 420
BstSFI CTRYAG 1 cut(s) 367
BstV1I GCAGC 2 cut(s) 219, 403
BsuRI GGCC 1 cut(s) 365
Cac8I GCNNGC 1 cut(s) 414
CfoI GCGC 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 215
CseI GACGC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 47
CspAI ACCGGT 1 cut(s) 215
CviJI RGCY 8 cut(s) 97, 119, 232, 251, 365, 397, 416, 435
CviKI_1 RGCY 8 cut(s) 97, 119, 232, 251, 365, 397, 416, 435
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 3 cut(s) 39, 278, 316
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Ecl136II GAGCTC 2 cut(s) 251, 435
Eco147I AGGCCT 1 cut(s) 365
Eco24I GRGCYC 2 cut(s) 253, 437
Eco53kI GAGCTC 2 cut(s) 251, 435
EcoICRI GAGCTC 2 cut(s) 251, 435
EcoRI GAATTC 1 cut(s) 142
EcoT38I GRGCYC 2 cut(s) 253, 437
FaiI YATR 5 cut(s) 18, 112, 132, 339, 341
FaqI GGGAC 1 cut(s) 256
Fnu4HI GCNGC 2 cut(s) 233, 417
FriOI GRGCYC 2 cut(s) 253, 437
Fsp4HI GCNGC 2 cut(s) 233, 417
FspBI CTAG 1 cut(s) 246
FspI TGCGCA 1 cut(s) 32
GlaI GCGC 1 cut(s) 32
GluI GCNGC 2 cut(s) 233, 417
GsaI CCCAGC 2 cut(s) 239, 423
HaeIII GGCC 1 cut(s) 365
HapII CCGG 1 cut(s) 216
HgaI GACGC 1 cut(s) 197
HhaI GCGC 1 cut(s) 33
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 2 cut(s) 4, 372
HpaII CCGG 1 cut(s) 216
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 2 cut(s) 353, 392
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 1 cut(s) 81
Hpy8I GTNNAC 2 cut(s) 353, 392
HpyAV CCTTC 1 cut(s) 298
HpyCH4IV ACGT 2 cut(s) 349, 477
HpyCH4V TGCA 4 cut(s) 102, 204, 221, 412
HpyF3I CTNAG 3 cut(s) 39, 278, 316
HpySE526I ACGT 2 cut(s) 349, 477
HspAI GCGC 1 cut(s) 31
LmnI GCTCC 1 cut(s) 432
Lsp1109I GCAGC 2 cut(s) 219, 403
LweI GCATC 2 cut(s) 55, 111
MaeI CTAG 1 cut(s) 246
MaeII ACGT 2 cut(s) 349, 477
MaeIII GTNAC 3 cut(s) 122, 149, 400
MboII GAAGA 2 cut(s) 313, 371
MhlI GDGCHC 2 cut(s) 253, 437
MluCI AATT 2 cut(s) 142, 273
MlyI GAGTC 1 cut(s) 381
MnlI CCTC 8 cut(s) 34, 37, 127, 233, 256, 313, 325, 355
MroXI GAANNNNTTC 1 cut(s) 273
MslI CAYNNNNRTG 2 cut(s) 63, 129
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 1 cut(s) 216
NmuCI GTSAC 2 cut(s) 122, 400
NsbI TGCGCA 1 cut(s) 32
PceI AGGCCT 1 cut(s) 365
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 1 cut(s) 4
PinAI ACCGGT 1 cut(s) 215
PkrI GCNGC 2 cut(s) 234, 418
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
Psp124BI GAGCTC 2 cut(s) 253, 437
PspFI CCCAGC 2 cut(s) 235, 419
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
RseI CAYNNNNRTG 2 cut(s) 63, 129
SacI GAGCTC 2 cut(s) 253, 437
SatI GCNGC 2 cut(s) 233, 417
SchI GAGTC 1 cut(s) 381
SduI GDGCHC 2 cut(s) 253, 437
SfaNI GCATC 2 cut(s) 55, 111
SfcI CTRYAG 1 cut(s) 367
SmiMI CAYNNNNRTG 2 cut(s) 63, 129
Sse9I AATT 2 cut(s) 142, 273
SseBI AGGCCT 1 cut(s) 365
SspMI CTAG 1 cut(s) 246
SstI GAGCTC 2 cut(s) 253, 437
StuI AGGCCT 1 cut(s) 365
TaiI ACGT 2 cut(s) 352, 480
TaqI TCGA 2 cut(s) 329, 357
TasI AATT 2 cut(s) 142, 273
TfiI GAWTC 1 cut(s) 4
TseFI GTSAC 2 cut(s) 122, 400
TseI GCWGC 2 cut(s) 232, 416
Tsp45I GTSAC 2 cut(s) 122, 400
TspDTI ATGAA 2 cut(s) 17, 169
TspGWI ACGGA 1 cut(s) 168
XapI RAATTY 2 cut(s) 142, 273
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.