Prupe.3G111800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Forward (+)
9324483 .. 9326299
1817 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G111800.1_v2.0.a1.CDS.4

Sequence Viewer

Length: 609 bp
ATGACCACTCTCATTGTTTCCTCCATTAACATTGTTGTTGCTCTATATGTTCTTCGTTCTCAATACGCTTCTCTGTACATCTACTGCGATAGAGATTCACGTCCCACTCTTGAGTACACTCCTAATCAGATTGGGAAAATGGAGGAATCAGTTTGGATTCGAAAAGCAGCTGAACCGTTTGAGCTCATTAGATTGGTAAAGGCACTAAAGAAGGAGCTTTGCAGAGAGGTAGTGGTTGAATTGTCACAGCCTTTGAAACTGAAGATAACCAATGAAATAGTTGAGAGGTTGAAAATCTTGAGGCCCAAAGCAAATGTTACTGATCAGAGAGGTCAATGGTGCAAGGAAAAACTAAAAGAAGCTAAGCAGTTGGCTATTGAGACAGAGGCGTCAAATTCCAGAGTTAGTCATGAGGAAGCAGGTGTGGTCATTATTTGTGAACTGGTTTGCTTGGATCAAGGTAAACGTGCCAAGCCTAATGAAAAGAGATGTAATATATGGGTATACTGCCCGTTTGAAAGCGGTTGCCATTCTCCAGATATTTATGGGCATAGACTTGGGCAGTGCTGGCTGAAATACGTAAGAATTAAACCTCTTTACTATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAN_4

Protein Analysis

203

Amino Acids

23.43

Weight (kDa)

8.9

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 410
AasI GACNNNNNNGTC 1 cut(s) 388
Acc36I ACCTGC 1 cut(s) 410
AccI GTMKAC 1 cut(s) 504
AciI CCGC 1 cut(s) 522
AclWI GGATC 1 cut(s) 462
AcsI RAATTY 1 cut(s) 394
AcuI CTGAAG 1 cut(s) 281
AcyI GRCGYC 1 cut(s) 389
AfaI GTAC 2 cut(s) 77, 116
AgsI TTSAA 4 cut(s) 239, 256, 292, 518
AjiI CACGTC 1 cut(s) 101
AluBI AGCT 4 cut(s) 170, 184, 217, 362
AluI AGCT 4 cut(s) 170, 184, 217, 362
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 374
AlwI GGATC 1 cut(s) 462
AoxI GGCC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 394
AspS9I GGNCC 1 cut(s) 303
AsuII TTCGAA 1 cut(s) 160
BanII GRGCYC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 179
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 374
BfuAI ACCTGC 1 cut(s) 410
BisI GCNGC 1 cut(s) 168
BlpI GCTNAGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 169
BmgBI CACGTC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 519
Bpu1102I GCTNAGC 1 cut(s) 363
Bpu14I TTCGAA 1 cut(s) 160
BpuEI CTTGAG 2 cut(s) 131, 319
BsaAI YACGTR 1 cut(s) 580
BsaHI GRCGYC 1 cut(s) 389
Bse1I ACTGG 1 cut(s) 447
BseNI ACTGG 1 cut(s) 447
BseXI GCAGC 1 cut(s) 179
BshFI GGCC 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 186
BslFI GGGAC 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 87
BsnI GGCC 1 cut(s) 304
Bsp119I TTCGAA 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 186
Bsp1407I TGTACA 1 cut(s) 75
Bsp143I GATC 2 cut(s) 322, 454
Bsp1720I GCTNAGC 1 cut(s) 363
BspACI CCGC 1 cut(s) 522
BspANI GGCC 1 cut(s) 304
BspHI TCATGA 1 cut(s) 409
BspMI ACCTGC 1 cut(s) 410
BspPI GGATC 1 cut(s) 462
BspT104I TTCGAA 1 cut(s) 160
BsrGI TGTACA 1 cut(s) 75
BsrI ACTGG 1 cut(s) 447
BssMI GATC 2 cut(s) 322, 454
BssNAI GTATAC 1 cut(s) 505
BssNI GRCGYC 1 cut(s) 389
Bst1107I GTATAC 1 cut(s) 505
Bst4CI ACNGT 1 cut(s) 177
BstACI GRCGYC 1 cut(s) 389
BstAUI TGTACA 1 cut(s) 75
BstBAI YACGTR 1 cut(s) 580
BstBI TTCGAA 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 569
BstDEI CTNAG 1 cut(s) 363
BstKTI GATC 2 cut(s) 325, 457
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 2 cut(s) 322, 454
BstMWI GCNNNNNNNGC 1 cut(s) 568
BstSNI TACGTA 1 cut(s) 580
BstV1I GCAGC 1 cut(s) 179
BstZ17I GTATAC 1 cut(s) 505
BsuRI GGCC 1 cut(s) 304
BtrI CACGTC 1 cut(s) 101
BtsI GCAGTG 1 cut(s) 569
BtsIMutI CAGTG 1 cut(s) 569
BveI ACCTGC 1 cut(s) 410
Cac8I GCNNGC 1 cut(s) 569
CciI TCATGA 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 303
CseI GACGC 1 cut(s) 378
Csp6I GTAC 2 cut(s) 76, 115
CspCI CAANNNNNGTGG 1 cut(s) 30
CviAII CATG 1 cut(s) 410
CviJI RGCY 9 cut(s) 170, 184, 217, 250, 304, 362, 374, 475, 571
CviKI_1 RGCY 9 cut(s) 170, 184, 217, 250, 304, 362, 374, 475, 571
CviQI GTAC 2 cut(s) 76, 115
DdeI CTNAG 1 cut(s) 363
DpnI GATC 2 cut(s) 324, 456
DpnII GATC 2 cut(s) 322, 454
DrdI GACNNNNNNGTC 1 cut(s) 388
DseDI GACNNNNNNGTC 1 cut(s) 388
Ecl136II GAGCTC 1 cut(s) 184
Eco105I TACGTA 1 cut(s) 580
Eco24I GRGCYC 1 cut(s) 186
Eco53kI GAGCTC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 186
FaeI CATG 1 cut(s) 413
FaiI YATR 9 cut(s) 46, 48, 411, 497, 499, 505, 546, 552, 603
FaqI GGGAC 1 cut(s) 87
FatI CATG 1 cut(s) 409
FbaI TGATCA 1 cut(s) 322
FblI GTMKAC 1 cut(s) 504
Fnu4HI GCNGC 1 cut(s) 168
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 168
GsuI CTGGAG 1 cut(s) 519
HaeIII GGCC 1 cut(s) 304
HgaI GACGC 1 cut(s) 378
Hin1I GRCGYC 1 cut(s) 389
Hin1II CATG 1 cut(s) 413
HinfI GANTC 3 cut(s) 95, 146, 157
Hpy166II GTNNAC 4 cut(s) 117, 440, 464, 505
Hpy188I TCNGA 2 cut(s) 129, 327
Hpy188III TCNNGA 5 cut(s) 110, 298, 399, 410, 536
Hpy8I GTNNAC 4 cut(s) 117, 440, 464, 505
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4IV ACGT 3 cut(s) 100, 466, 579
HpyCH4V TGCA 2 cut(s) 222, 342
HpyF10VI GCNNNNNNNGC 1 cut(s) 568
HpyF3I CTNAG 1 cut(s) 363
HpySE526I ACGT 3 cut(s) 100, 466, 579
Hsp92I GRCGYC 1 cut(s) 389
Hsp92II CATG 1 cut(s) 413
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 2 cut(s) 322, 454
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 5 cut(s) 405, 412, 428, 549, 553
Lsp1109I GCAGC 1 cut(s) 179
MaeII ACGT 3 cut(s) 100, 466, 579
MaeIII GTNAC 2 cut(s) 243, 316
MalI GATC 2 cut(s) 324, 456
MboI GATC 2 cut(s) 322, 454
MboII GAAGA 2 cut(s) 44, 274
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 3 cut(s) 239, 394, 585
MnlI CCTC 9 cut(s) 31, 136, 220, 279, 294, 323, 379, 406, 603
MseI TTAA 2 cut(s) 27, 588
MspA1I CMGCKG 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 568
NdeII GATC 2 cut(s) 322, 454
NlaIII CATG 1 cut(s) 413
NmuCI GTSAC 1 cut(s) 243
NspV TTCGAA 1 cut(s) 160
PagI TCATGA 1 cut(s) 409
PaqCI CACCTGC 1 cut(s) 410
PfeI GAWTC 3 cut(s) 95, 146, 157
PkrI GCNGC 1 cut(s) 169
Ppu21I YACGTR 1 cut(s) 580
Psp124BI GAGCTC 1 cut(s) 186
PspPI GGNCC 1 cut(s) 303
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 2 cut(s) 77, 116
RsaNI GTAC 2 cut(s) 76, 115
SacI GAGCTC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 27, 588
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 2 cut(s) 322, 454
Sau96I GGNCC 1 cut(s) 303
SduI GDGCHC 1 cut(s) 186
SfuI TTCGAA 1 cut(s) 160
SmlI CTYRAG 2 cut(s) 110, 298
SmoI CTYRAG 2 cut(s) 110, 298
SnaBI TACGTA 1 cut(s) 580
Sse9I AATT 3 cut(s) 239, 394, 585
SsiI CCGC 1 cut(s) 522
SstI GAGCTC 1 cut(s) 186
TaaI ACNGT 1 cut(s) 177
TaiI ACGT 3 cut(s) 103, 469, 582
TaqI TCGA 1 cut(s) 160
TasI AATT 3 cut(s) 239, 394, 585
TatI WGTACW 2 cut(s) 75, 114
TfiI GAWTC 3 cut(s) 95, 146, 157
Tru1I TTAA 2 cut(s) 27, 588
Tru9I TTAA 2 cut(s) 27, 588
TscAI CASTG 1 cut(s) 569
TseFI GTSAC 1 cut(s) 243
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 243
TspDTI ATGAA 2 cut(s) 288, 495
TspRI CASTG 1 cut(s) 569
XapI RAATTY 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.