Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0029080

Physical Location & Seq

Genomic Coordinates Forward (+)

9624805 .. 9627115

Gene Structure 2311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G114300.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTCCATCTTCACACTTGCCTTCCTTCTCACAATCATTTACACAAGCGGCTTGTATGCATACTCATCAACCACAACAACCACCATCTCCGCCGCCACAATAACCACCACAACAACCGCCTCCACCGCCGTCCCCCAGCTCCCCACCACCGTTTTCAACACCCTCCTCTACTACGCCGCCAAATCCAATGACACATTCAAAATATCATACGCCGACATCAAGCCCATCTTGGACGCCCTCCGGAAATGCTCAACCCCCTGCAACTTCCTCATCTTCGGCCTAACCCACGAGACCCTCCTCTGGAAGGCCCTCAACAACAACGGCCGCACCGTCTTCATCGACAAAAACCGCTACTTCGCCGCGTACACATGGAGGAGAAACACCCGGAAATCGATGCGTACGACGTGCAGTACACAACAAAATCGAAAGAGCTCAAGGAGCTGGTGGCGGTGCCAAAAGAGCAAATACGGAATGAGTGCAGGTCGGTGCAGAAAAAAAAATTTTGTTGTCCCCCCCACCAAAATCTCATCGTCCCCGACCCCATTCCAAATCAAAATCTGTCATTGTATTAAAGACCAATTTTTCATAATCTTGAGTTCTTCTTATCTGTATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

206

Amino Acids

23.32

Weight (kDa)

10.03

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029080)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G114300_v2.0.a1 Prupe.7G074500_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	470
AccB1I	GGYRCC	1 cut(s)	450
AccII	CGCG	1 cut(s)	362
AccIII	TCCGGA	1 cut(s)	240
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	499
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	3 cut(s)	365, 400, 412
AfiI	CCNNNNNNNGG	2 cut(s)	300, 304
AgsI	TTSAA	2 cut(s)	157, 199
AjiI	CACGTC	1 cut(s)	405
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	3 cut(s)	139, 432, 441
AluI	AGCT	3 cut(s)	139, 432, 441
Alw21I	GWGCWC	1 cut(s)	434
Alw26I	GTCTC	1 cut(s)	284
Aor13HI	TCCGGA	1 cut(s)	240
AoxI	GGCC	3 cut(s)	277, 306, 322
ApoI	RAATTY	1 cut(s)	499
AspS9I	GGNCC	1 cut(s)	307
AsuC2I	CCSGG	1 cut(s)	385
BanI	GGYRCC	1 cut(s)	450
BanII	GRGCYC	1 cut(s)	434
BauI	CACGAG	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	434
BccI	CCATC	3 cut(s)	14, 92, 233
BceAI	ACGGC	2 cut(s)	113, 337
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	284
BfuAI	ACCTGC	1 cut(s)	470
BisI	GCNGC	5 cut(s)	49, 93, 177, 325, 360
BlsI	GCNGC	5 cut(s)	50, 94, 178, 326, 361
Bme1390I	CCNGG	1 cut(s)	385
BmgBI	CACGTC	1 cut(s)	405
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	452
BmrFI	CCNGG	1 cut(s)	385
BmsI	GCATC	1 cut(s)	384
BpiI	GAAGAC	1 cut(s)	325
BpuEI	CTTGAG	2 cut(s)	418, 613
BpuMI	CCSGG	1 cut(s)	385
Bsa29I	ATCGAT	1 cut(s)	392
BsaHI	GRCGYC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	284
BsaWI	WCCGGW	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	2 cut(s)	300, 304
BseAI	TCCGGA	1 cut(s)	240
BseCI	ATCGAT	1 cut(s)	392
BseLI	CCNNNNNNNGG	2 cut(s)	300, 304
BseRI	GAGGAG	3 cut(s)	155, 287, 388
BseX3I	CGGCCG	1 cut(s)	322
BseYI	CCCAGC	1 cut(s)	135
BsgI	GTGCAG	3 cut(s)	427, 498, 508
Bsh1236I	CGCG	1 cut(s)	362
Bsh1285I	CGRYCG	1 cut(s)	325
BshFI	GGCC	3 cut(s)	279, 308, 324
BshNI	GGYRCC	1 cut(s)	450
BshVI	ATCGAT	1 cut(s)	392
BsiEI	CGRYCG	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	434
BsiSI	CCGG	2 cut(s)	241, 385
BsiWI	CGTACG	1 cut(s)	398
BslFI	GGGAC	3 cut(s)	116, 494, 517
BslI	CCNNNNNNNGG	2 cut(s)	300, 304
BsmAI	GTCTC	1 cut(s)	284
BsmFI	GGGAC	3 cut(s)	116, 494, 517
BsnI	GGCC	3 cut(s)	279, 308, 324
Bso31I	GGTCTC	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp13I	TCCGGA	1 cut(s)	240
BspANI	GGCC	3 cut(s)	279, 308, 324
BspDI	ATCGAT	1 cut(s)	392
BspEI	TCCGGA	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	362
BspLI	GGNNCC	1 cut(s)	452
BspMI	ACCTGC	1 cut(s)	470
BspT107I	GGYRCC	1 cut(s)	450
BspTNI	GGTCTC	1 cut(s)	284
BssNI	GRCGYC	1 cut(s)	234
BssSI	CACGAG	1 cut(s)	287
Bst2BI	CACGAG	1 cut(s)	287
Bst4CI	ACNGT	2 cut(s)	151, 331
BstACI	GRCGYC	1 cut(s)	234
BstENI	CCTNNNNNAGG	1 cut(s)	302
BstFNI	CGCG	1 cut(s)	362
BstMAI	GTCTC	1 cut(s)	284
BstMCI	CGRYCG	1 cut(s)	325
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 438, 459
BstSCI	CCNGG	1 cut(s)	383
BstUI	CGCG	1 cut(s)	362
BstV2I	GAAGAC	1 cut(s)	325
BstZI	CGGCCG	1 cut(s)	322
Bsu15I	ATCGAT	1 cut(s)	392
BsuRI	GGCC	3 cut(s)	279, 308, 324
BsuTUI	ATCGAT	1 cut(s)	392
BtrI	CACGTC	1 cut(s)	405
BveI	ACCTGC	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	307
ClaI	ATCGAT	1 cut(s)	392
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	3 cut(s)	364, 399, 411
CviAII	CATG	1 cut(s)	369
CviJI	RGCY	8 cut(s)	51, 139, 223, 279, 308, 324, 432, 441
CviKI_1	RGCY	8 cut(s)	51, 139, 223, 279, 308, 324, 432, 441
CviQI	GTAC	3 cut(s)	364, 399, 411
EaeI	YGGCCR	1 cut(s)	322
EagI	CGGCCG	1 cut(s)	322
EciI	GGCGGA	1 cut(s)	79
Ecl136II	GAGCTC	1 cut(s)	432
EclXI	CGGCCG	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	434
Eco31I	GGTCTC	1 cut(s)	284
Eco52I	CGGCCG	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	432
EcoICRI	GAGCTC	1 cut(s)	432
EcoNI	CCTNNNNNAGG	1 cut(s)	302
EcoO109I	RGGNCCY	1 cut(s)	307
EcoT22I	ATGCAT	2 cut(s)	61, 616
EcoT38I	GRGCYC	1 cut(s)	434
FaeI	CATG	1 cut(s)	372
FaiI	YATR	7 cut(s)	57, 61, 208, 370, 587, 612, 616
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	3 cut(s)	116, 494, 517
FatI	CATG	1 cut(s)	368
Fnu4HI	GCNGC	5 cut(s)	49, 93, 177, 325, 360
FriOI	GRGCYC	1 cut(s)	434
Fsp4HI	GCNGC	5 cut(s)	49, 93, 177, 325, 360
GluI	GCNGC	5 cut(s)	49, 93, 177, 325, 360
GsaI	CCCAGC	1 cut(s)	139
HaeIII	GGCC	3 cut(s)	279, 308, 324
HapII	CCGG	2 cut(s)	241, 385
HgaI	GACGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	1 cut(s)	372
HpaII	CCGG	2 cut(s)	241, 385
Hpy166II	GTNNAC	2 cut(s)	366, 413
Hpy188III	TCNNGA	3 cut(s)	241, 301, 592
Hpy8I	GTNNAC	2 cut(s)	366, 413
Hpy99I	CGWCG	1 cut(s)	406
HpyAV	CCTTC	3 cut(s)	31, 35, 298
HpyCH4III	ACNGT	2 cut(s)	151, 331
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	6 cut(s)	59, 261, 408, 479, 489, 614
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 438, 459
HpySE526I	ACGT	1 cut(s)	404
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	372
Kpn2I	TCCGGA	1 cut(s)	240
LmnI	GCTCC	2 cut(s)	144, 438
LpnPI	CCDG	7 cut(s)	149, 254, 271, 286, 398, 427, 465
LweI	GCATC	1 cut(s)	384
MaeII	ACGT	1 cut(s)	404
MboII	GAAGA	3 cut(s)	265, 325, 591
MhlI	GDGCHC	1 cut(s)	434
MluCI	AATT	2 cut(s)	499, 578
MnlI	CCTC	9 cut(s)	130, 173, 176, 248, 278, 305, 308, 320, 366
Mph1103I	ATGCAT	2 cut(s)	61, 616
MroI	TCCGGA	1 cut(s)	240
MseI	TTAA	1 cut(s)	570
MspI	CCGG	2 cut(s)	241, 385
MspR9I	CCNGG	1 cut(s)	385
MvnI	CGCG	1 cut(s)	362
MwoI	GCNNNNNNNGC	3 cut(s)	125, 438, 459
NciI	CCSGG	1 cut(s)	385
NlaIII	CATG	1 cut(s)	372
NlaIV	GGNNCC	1 cut(s)	452
NsiI	ATGCAT	2 cut(s)	61, 616
PcsI	WCGNNNNNNNCGW	2 cut(s)	327, 398
Pfl23II	CGTACG	1 cut(s)	398
PkrI	GCNGC	5 cut(s)	50, 94, 178, 326, 361
Psp124BI	GAGCTC	1 cut(s)	434
PspFI	CCCAGC	1 cut(s)	135
PspLI	CGTACG	1 cut(s)	398
PspN4I	GGNNCC	1 cut(s)	452
PspPI	GGNCC	1 cut(s)	307
RsaI	GTAC	3 cut(s)	365, 400, 412
RsaNI	GTAC	3 cut(s)	364, 399, 411
SacI	GAGCTC	1 cut(s)	434
SaqAI	TTAA	1 cut(s)	570
SatI	GCNGC	5 cut(s)	49, 93, 177, 325, 360
Sau96I	GGNCC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	385
SduI	GDGCHC	1 cut(s)	434
SetI	ASST	5 cut(s)	141, 407, 434, 443, 484
SfaNI	GCATC	1 cut(s)	384
SmlI	CTYRAG	2 cut(s)	433, 592
SmoI	CTYRAG	2 cut(s)	433, 592
Sse9I	AATT	2 cut(s)	499, 578
SstI	GAGCTC	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	383
TaaI	ACNGT	2 cut(s)	151, 331
TaiI	ACGT	1 cut(s)	407
TaqI	TCGA	3 cut(s)	339, 392, 424
TasI	AATT	2 cut(s)	499, 578
TatI	WGTACW	1 cut(s)	410
TauI	GCSGC	5 cut(s)	51, 95, 179, 327, 362
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TspDTI	ATGAA	2 cut(s)	325, 574
TspGWI	ACGGA	1 cut(s)	483
XagI	CCTNNNNNAGG	1 cut(s)	302
XapI	RAATTY	1 cut(s)	499
Zsp2I	ATGCAT	2 cut(s)	61, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.