Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10703467 .. 10704894

Gene Structure 1428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G120900.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCTTCACACAAGGCTTCGTGCCAACAAATCACAGAAATTCCAGAGAAAGAAGGCTTCGTGCCATGAAATCAACAAAATTAATTTCAGTACGGCTTCGTGCCAGATATCAATCACCAAGAATCAAGAGAAATCAAAGAATAAGCAACAAATTCCAAATCAATTTCACCAAATTCTGAAAAATCACTTCAAGGAGACACAATCACCATTCTTGAAGATAAACAGTGAACCAAGATTTGTGAGAAAGAATCAGAGACCTGAGAATGGCGAGCGAAGCGAACAAGAAATCACGTCAAGAGGCACAGCGATCGATCGAGGCTCTCGATACCTTGATAACCATGGAGAAGACCAAGGTTGTGAAGGTGGCTTGATGGACGATGCCTTTCAGTTCAACAAAATCATGGGATTAGTACGGAAGCTAGATACCCTTACAACATTGTTGATGGTACATGCAACACCAAGAGAAGAAGCCACCATTGCAGCCAAGATAATTGGGTATGAAGATGTTCCTGCAAACAGTGAAAAGGCTCTTCTTACCGTTGTTGCTCATCAACCAGTTTCTGTTGCCATTGATGCTAGTGGTTCTGATTTCCAATTCTATTCAAGTGGTGTCTTTACAGGAACTTGTGGAACGAGCCTAGACCATGGTGTTACTGCGGTTGGTTATGAAGTGAGTGATGATGGGACCAAATATTGGTTTGTGAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

237

Amino Acids

26.46

Weight (kDa)

8.81

Isoelectric Point (pI)

31.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	693
AciI	CCGC	1 cut(s)	656
AcsI	RAATTY	3 cut(s)	38, 150, 171
AfaI	GTAC	3 cut(s)	91, 411, 447
AfiI	CCNNNNNNNGG	2 cut(s)	263, 693
AgsI	TTSAA	4 cut(s)	190, 214, 391, 603
AjiI	CACGTC	1 cut(s)	291
AluBI	AGCT	1 cut(s)	418
AluI	AGCT	1 cut(s)	418
Alw26I	GTCTC	2 cut(s)	188, 247
AlwNI	CAGNNNCTG	1 cut(s)	560
ApeKI	GCWGC	1 cut(s)	479
ApoI	RAATTY	3 cut(s)	38, 150, 171
AseI	ATTAAT	1 cut(s)	81
Asp700I	GAANNNNTTC	1 cut(s)	504
AspS9I	GGNCC	1 cut(s)	684
AsuHPI	GGTGA	3 cut(s)	106, 158, 195
AvaII	GGWCC	1 cut(s)	684
BbsI	GAAGAC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	3 cut(s)	364, 436, 674
BceAI	ACGGC	1 cut(s)	108
BcgI	CGANNNNNNTGC	2 cut(s)	289, 323
BcoDI	GTCTC	2 cut(s)	188, 247
BfaI	CTAG	3 cut(s)	419, 576, 638
BisI	GCNGC	1 cut(s)	480
BlsI	GCNGC	1 cut(s)	481
Bme18I	GGWCC	1 cut(s)	684
BmgBI	CACGTC	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	684
BmiI	GGNNCC	1 cut(s)	685
BmsI	GCATC	2 cut(s)	367, 562
BpiI	GAAGAC	1 cut(s)	351
Bsa29I	ATCGAT	1 cut(s)	309
BsaBI	GATNNNNATC	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	247
BsaJI	CCNNGG	3 cut(s)	337, 349, 643
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 693
Bse1I	ACTGG	1 cut(s)	554
Bse3DI	GCAATG	1 cut(s)	474
Bse8I	GATNNNNATC	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	3 cut(s)	337, 349, 643
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	2 cut(s)	263, 693
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	554
BseXI	GCAGC	1 cut(s)	491
Bsh1285I	CGRYCG	2 cut(s)	309, 313
BshVI	ATCGAT	1 cut(s)	309
BsiEI	CGRYCG	2 cut(s)	309, 313
BslFI	GGGAC	1 cut(s)	697
BslI	CCNNNNNNNGG	2 cut(s)	263, 693
BsmAI	GTCTC	2 cut(s)	188, 247
BsmFI	GGGAC	1 cut(s)	697
Bso31I	GGTCTC	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	306, 310
Bsp19I	CCATGG	2 cut(s)	337, 643
BspACI	CCGC	1 cut(s)	656
BspCNI	CTCAG	1 cut(s)	250
BspDI	ATCGAT	1 cut(s)	309
BspLI	GGNNCC	1 cut(s)	685
BspQI	GCTCTTC	1 cut(s)	534
BspTNI	GGTCTC	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	554
BssECI	CCNNGG	3 cut(s)	337, 349, 643
BssMI	GATC	2 cut(s)	306, 310
BssT1I	CCWWGG	3 cut(s)	337, 349, 643
Bst4CI	ACNGT	3 cut(s)	224, 518, 538
Bst6I	CTCTTC	1 cut(s)	534
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	258
BstDSI	CCRYGG	2 cut(s)	337, 643
BstKTI	GATC	2 cut(s)	309, 313
BstMAI	GTCTC	2 cut(s)	188, 247
BstMBI	GATC	2 cut(s)	306, 310
BstMCI	CGRYCG	2 cut(s)	309, 313
BstMWI	GCNNNNNNNGC	3 cut(s)	273, 476, 572
BstNSI	RCATGY	1 cut(s)	452
BstV1I	GCAGC	1 cut(s)	491
BstV2I	GAAGAC	1 cut(s)	351
Bsu15I	ATCGAT	1 cut(s)	309
BsuTUI	ATCGAT	1 cut(s)	309
BtgI	CCRYGG	2 cut(s)	337, 643
BtrI	CACGTC	1 cut(s)	291
BtsIMutI	CAGTG	2 cut(s)	229, 523
Cac8I	GCNNGC	1 cut(s)	269
CaiI	CAGNNNCTG	1 cut(s)	560
Cfr13I	GGNCC	1 cut(s)	684
ClaI	ATCGAT	1 cut(s)	309
Csp6I	GTAC	3 cut(s)	90, 410, 446
CviAII	CATG	5 cut(s)	65, 338, 400, 449, 644
CviQI	GTAC	3 cut(s)	90, 410, 446
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	2 cut(s)	308, 312
DpnII	GATC	2 cut(s)	306, 310
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco130I	CCWWGG	3 cut(s)	337, 349, 643
Eco31I	GGTCTC	1 cut(s)	247
Eco32I	GATATC	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	684
EcoRV	GATATC	1 cut(s)	108
EcoT14I	CCWWGG	3 cut(s)	337, 349, 643
ErhI	CCWWGG	3 cut(s)	337, 349, 643
FaeI	CATG	5 cut(s)	68, 341, 403, 452, 647
FaiI	YATR	7 cut(s)	66, 339, 401, 450, 498, 645, 666
FaqI	GGGAC	1 cut(s)	697
FatI	CATG	5 cut(s)	64, 337, 399, 448, 643
Fnu4HI	GCNGC	1 cut(s)	480
Fsp4HI	GCNGC	1 cut(s)	480
FspBI	CTAG	3 cut(s)	419, 576, 638
GluI	GCNGC	1 cut(s)	480
Hin1II	CATG	5 cut(s)	68, 341, 403, 452, 647
HinfI	GANTC	2 cut(s)	121, 247
HphI	GGTGA	3 cut(s)	106, 158, 195
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	3 cut(s)	177, 252, 586
Hpy188III	TCNNGA	5 cut(s)	43, 125, 211, 294, 321
Hpy8I	GTNNAC	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	46, 353
HpyCH4III	ACNGT	3 cut(s)	224, 518, 538
HpyCH4IV	ACGT	1 cut(s)	290
HpyCH4V	TGCA	3 cut(s)	452, 479, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	273, 476, 572
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	290
Hsp92II	CATG	5 cut(s)	68, 341, 403, 452, 647
Kzo9I	GATC	2 cut(s)	306, 310
LguI	GCTCTTC	1 cut(s)	534
LpnPI	CCDG	6 cut(s)	56, 116, 270, 522, 567, 603
Lsp1109I	GCAGC	1 cut(s)	491
LweI	GCATC	2 cut(s)	367, 562
MaeI	CTAG	3 cut(s)	419, 576, 638
MaeII	ACGT	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	649
MalI	GATC	2 cut(s)	308, 312
MboI	GATC	2 cut(s)	306, 310
MboII	GAAGA	5 cut(s)	226, 356, 476, 512, 521
MluCI	AATT	8 cut(s)	38, 78, 82, 150, 161, 171, 489, 593
MnlI	CCTC	2 cut(s)	290, 308
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	1 cut(s)	81
MwoI	GCNNNNNNNGC	3 cut(s)	273, 476, 572
NcoI	CCATGG	2 cut(s)	337, 643
NdeII	GATC	2 cut(s)	306, 310
NlaIII	CATG	5 cut(s)	68, 341, 403, 452, 647
NlaIV	GGNNCC	1 cut(s)	685
NspI	RCATGY	1 cut(s)	452
PciSI	GCTCTTC	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	2 cut(s)	121, 247
PflMI	CCANNNNNTGG	1 cut(s)	693
PkrI	GCNGC	1 cut(s)	481
Ple19I	CGATCG	2 cut(s)	309, 313
PshBI	ATTAAT	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	685
PspPI	GGNCC	1 cut(s)	684
PstNI	CAGNNNCTG	1 cut(s)	560
PvuI	CGATCG	2 cut(s)	309, 313
RsaI	GTAC	3 cut(s)	91, 411, 447
RsaNI	GTAC	3 cut(s)	90, 410, 446
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	1 cut(s)	480
Sau3AI	GATC	2 cut(s)	306, 310
Sau96I	GGNCC	1 cut(s)	684
SetI	ASST	6 cut(s)	259, 293, 330, 355, 364, 420
SfaNI	GCATC	2 cut(s)	367, 562
SinI	GGWCC	1 cut(s)	684
Sse9I	AATT	8 cut(s)	38, 78, 82, 150, 161, 171, 489, 593
SsiI	CCGC	1 cut(s)	656
SspI	AATATT	1 cut(s)	692
SspMI	CTAG	3 cut(s)	419, 576, 638
StyI	CCWWGG	3 cut(s)	337, 349, 643
TaaI	ACNGT	3 cut(s)	224, 518, 538
TaiI	ACGT	1 cut(s)	293
TaqI	TCGA	3 cut(s)	309, 313, 322
TasI	AATT	8 cut(s)	38, 78, 82, 150, 161, 171, 489, 593
TfiI	GAWTC	2 cut(s)	121, 247
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	2 cut(s)	229, 523
TseI	GCWGC	1 cut(s)	479
TspDTI	ATGAA	3 cut(s)	81, 513, 681
TspGWI	ACGGA	1 cut(s)	427
TspRI	CASTG	2 cut(s)	229, 523
Van91I	CCANNNNNTGG	1 cut(s)	693
VpaK11BI	GGWCC	1 cut(s)	684
VspI	ATTAAT	1 cut(s)	81
XapI	RAATTY	3 cut(s)	38, 150, 171
XceI	RCATGY	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	3 cut(s)	419, 576, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.