Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10925602 .. 10927599

Gene Structure 1998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G122500.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGAATTACCAACAAAGACAGTAGATTGTGATGCCGAAAAAACTCGTTATAGAATTAAGACCAGAAAAGTTTCTTACAAATTATCTACCAGAGTCGAATTCCATTGGATGGTGTGGCCAGAGGAACCTCCAAAAGCATCATACATTCTGAAGAATGTAAGTTGTTATGCTAGACTAGGAGAGATCACAGCTATTGCTGGTCCAAGTGGAGCAAGAAAGACAACTTTGCTAGAAATACTAGCGGGAATGATACCGCTAAATATTATTGTAGGCCAAGTTCTTGTGAATGAGCAGCCGATGAATAAGGCCACTTCCAGAGTTGAAAAGTTGTTAGACGAGCTTGGAGTTGAGCACATTGCCAATGTACGTGTTGGTAGCAAATCGAACTGTTGGATTTCAGGAGATGAAAAGCATAGAGTCTCAATTGGGGTTTATCTAGTTCATGATCCAGCAATTCTTCTGCTTGATGAACCAACATCCGGGTTGGATTCAGCCTCAGCTCTTGATGTGGCTTTGTTGCTGAAATCCATGGCTGCCCAACAAAGGGAATACAATTGTCTGTTTAATCAAATTTTGTTGCTGTCAAATGGAACTCTTCTTCACCATGGATCTCTACATCTCCTTGAGCAGCGGCTTAAATACGTAGGCCATTTCATTCCTAATAACTTGCTAGAGTTTGCTATGGACGCAACGAAAGACCTTATAGGAGTGGAAGAAATTAAGGAAGAATATGAGTACATCAGAGCAGGCCAGTGTTCTACAAAATATCTAGCTGCGTGTTTAGCCTTTGTCCAAAGTTCTATGACAAAGTCAACGGAAGCCACTGTAAAAATCAAAAGAAATTCGTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko01523 ko02010 ko04976 map01523 map02010 map04976

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

285

Amino Acids

31.78

Weight (kDa)

8.13

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	109
AciI	CCGC	3 cut(s)	242, 254, 631
AclWI	GGATC	2 cut(s)	440, 616
AcoI	YGGCCR	1 cut(s)	116
AcsI	RAATTY	3 cut(s)	98, 570, 841
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	3 cut(s)	366, 737, 848
AfiI	CCNNNNNNNGG	4 cut(s)	109, 479, 543, 544
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	1 cut(s)	323
AluBI	AGCT	4 cut(s)	191, 340, 500, 773
AluI	AGCT	4 cut(s)	191, 340, 500, 773
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	1 cut(s)	424
AlwI	GGATC	2 cut(s)	440, 616
AoxI	GGCC	5 cut(s)	116, 271, 306, 646, 748
ApeKI	GCWGC	4 cut(s)	292, 533, 628, 773
ApoI	RAATTY	3 cut(s)	98, 570, 841
Asp700I	GAANNNNTTC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	200
AsuC2I	CCSGG	1 cut(s)	481
AsuHPI	GGTGA	1 cut(s)	593
AvaII	GGWCC	1 cut(s)	200
BalI	TGGCCA	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	354
BbvCI	CCTCAGC	1 cut(s)	496
BbvI	GCAGC	4 cut(s)	304, 520, 640, 760
BccI	CCATC	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	481
BcoDI	GTCTC	1 cut(s)	424
BfaI	CTAG	7 cut(s)	171, 176, 230, 239, 437, 671, 770
BisI	GCNGC	5 cut(s)	293, 534, 629, 632, 774
BlsI	GCNGC	5 cut(s)	294, 535, 630, 633, 775
Bme1390I	CCNGG	1 cut(s)	481
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	481
BmsI	GCATC	2 cut(s)	22, 146
Bpu10I	CCTNAGC	1 cut(s)	496
BpuEI	CTTGAG	1 cut(s)	644
BpuMI	CCSGG	1 cut(s)	481
BsaAI	YACGTR	2 cut(s)	368, 643
BsaJI	CCNNGG	2 cut(s)	528, 604
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 479, 543, 544
Bse1I	ACTGG	1 cut(s)	751
Bse3DI	GCAATG	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	528, 604
BseGI	GGATG	2 cut(s)	114, 476
BseLI	CCNNNNNNNGG	4 cut(s)	109, 479, 543, 544
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	1 cut(s)	751
BseXI	GCAGC	4 cut(s)	304, 520, 640, 760
BshFI	GGCC	5 cut(s)	118, 273, 308, 648, 750
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	480
BslI	CCNNNNNNNGG	4 cut(s)	109, 479, 543, 544
BsmAI	GTCTC	1 cut(s)	424
BsnI	GGCC	5 cut(s)	118, 273, 308, 648, 750
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	3 cut(s)	183, 445, 608
Bsp19I	CCATGG	2 cut(s)	528, 604
BspACI	CCGC	3 cut(s)	242, 254, 631
BspANI	GGCC	5 cut(s)	118, 273, 308, 648, 750
BspCNI	CTCAG	1 cut(s)	509
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	1 cut(s)	126
BspPI	GGATC	2 cut(s)	440, 616
BsrDI	GCAATG	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	751
BssECI	CCNNGG	2 cut(s)	528, 604
BssMI	GATC	3 cut(s)	183, 445, 608
BssT1I	CCWWGG	2 cut(s)	528, 604
Bst4CI	ACNGT	3 cut(s)	22, 389, 826
Bst6I	CTCTTC	1 cut(s)	600
BstBAI	YACGTR	2 cut(s)	368, 643
BstC8I	GCNNGC	1 cut(s)	748
BstDEI	CTNAG	1 cut(s)	496
BstDSI	CCRYGG	2 cut(s)	528, 604
BstF5I	GGATG	2 cut(s)	114, 476
BstKTI	GATC	3 cut(s)	186, 448, 611
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	3 cut(s)	183, 445, 608
BstMWI	GCNNNNNNNGC	2 cut(s)	686, 782
BstSCI	CCNGG	1 cut(s)	479
BstSNI	TACGTA	1 cut(s)	643
BstV1I	GCAGC	4 cut(s)	304, 520, 640, 760
BstX2I	RGATCY	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	608
BsuRI	GGCC	5 cut(s)	118, 273, 308, 648, 750
BtgI	CCRYGG	2 cut(s)	528, 604
BtsCI	GGATG	2 cut(s)	114, 476
BtsIMutI	CAGTG	2 cut(s)	758, 822
Cac8I	GCNNGC	1 cut(s)	748
CciI	TCATGA	1 cut(s)	442
Cfr13I	GGNCC	1 cut(s)	200
CseI	GACGC	1 cut(s)	695
Csp6I	GTAC	3 cut(s)	365, 736, 847
CviAII	CATG	3 cut(s)	443, 529, 605
CviQI	GTAC	3 cut(s)	365, 736, 847
DdeI	CTNAG	1 cut(s)	496
DpnI	GATC	3 cut(s)	185, 447, 610
DpnII	GATC	3 cut(s)	183, 445, 608
EaeI	YGGCCR	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
Eco105I	TACGTA	1 cut(s)	643
Eco130I	CCWWGG	2 cut(s)	528, 604
Eco47I	GGWCC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	98
EcoT14I	CCWWGG	2 cut(s)	528, 604
ErhI	CCWWGG	2 cut(s)	528, 604
FaeI	CATG	3 cut(s)	446, 532, 608
FatI	CATG	3 cut(s)	442, 528, 604
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	5 cut(s)	293, 534, 629, 632, 774
FokI	GGATG	2 cut(s)	121, 463
Fsp4HI	GCNGC	5 cut(s)	293, 534, 629, 632, 774
FspBI	CTAG	7 cut(s)	171, 176, 230, 239, 437, 671, 770
GluI	GCNGC	5 cut(s)	293, 534, 629, 632, 774
HaeIII	GGCC	5 cut(s)	118, 273, 308, 648, 750
HapII	CCGG	1 cut(s)	480
HgaI	GACGC	1 cut(s)	695
Hin1II	CATG	3 cut(s)	446, 532, 608
HincII	GTYRAC	1 cut(s)	813
HindII	GTYRAC	1 cut(s)	813
HinfI	GANTC	3 cut(s)	93, 417, 488
HpaII	CCGG	1 cut(s)	480
HphI	GGTGA	1 cut(s)	593
Hpy166II	GTNNAC	1 cut(s)	813
Hpy188I	TCNGA	2 cut(s)	150, 743
Hpy188III	TCNNGA	4 cut(s)	315, 399, 443, 503
Hpy8I	GTNNAC	1 cut(s)	813
HpyCH4III	ACNGT	3 cut(s)	22, 389, 826
HpyCH4IV	ACGT	2 cut(s)	367, 642
HpyF10VI	GCNNNNNNNGC	2 cut(s)	686, 782
HpyF3I	CTNAG	1 cut(s)	496
HpySE526I	ACGT	2 cut(s)	367, 642
Hsp92II	CATG	3 cut(s)	446, 532, 608
Kzo9I	GATC	3 cut(s)	183, 445, 608
LmnI	GCTCC	1 cut(s)	209
Lsp1109I	GCAGC	4 cut(s)	304, 520, 640, 760
LweI	GCATC	2 cut(s)	22, 146
MaeI	CTAG	7 cut(s)	171, 176, 230, 239, 437, 671, 770
MaeII	ACGT	2 cut(s)	367, 642
MalI	GATC	3 cut(s)	185, 447, 610
MboI	GATC	3 cut(s)	183, 445, 608
MboII	GAAGA	6 cut(s)	163, 449, 587, 590, 725, 737
MfeI	CAATTG	2 cut(s)	423, 553
MflI	RGATCY	1 cut(s)	608
MhlI	GDGCHC	1 cut(s)	354
MlsI	TGGCCA	1 cut(s)	118
MluNI	TGGCCA	1 cut(s)	118
MlyI	GAGTC	2 cut(s)	102, 426
MmeI	TCCRAC	2 cut(s)	371, 465
MnlI	CCTC	3 cut(s)	115, 138, 505
Mox20I	TGGCCA	1 cut(s)	118
MroXI	GAANNNNTTC	1 cut(s)	70
MscI	TGGCCA	1 cut(s)	118
MseI	TTAA	4 cut(s)	57, 564, 636, 720
Msp20I	TGGCCA	1 cut(s)	118
MspA1I	CMGCKG	1 cut(s)	631
MspI	CCGG	1 cut(s)	480
MspR9I	CCNGG	1 cut(s)	481
MunI	CAATTG	2 cut(s)	423, 553
MwoI	GCNNNNNNNGC	2 cut(s)	686, 782
NciI	CCSGG	1 cut(s)	481
NcoI	CCATGG	2 cut(s)	528, 604
NdeII	GATC	3 cut(s)	183, 445, 608
NlaIII	CATG	3 cut(s)	446, 532, 608
NlaIV	GGNNCC	1 cut(s)	126
PagI	TCATGA	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	488
PflFI	GACNNNGTC	1 cut(s)	808
PflMI	CCANNNNNTGG	1 cut(s)	109
PkrI	GCNGC	5 cut(s)	294, 535, 630, 633, 775
PleI	GAGTC	2 cut(s)	101, 425
PpsI	GAGTC	2 cut(s)	101, 425
Ppu21I	YACGTR	2 cut(s)	368, 643
PspN4I	GGNNCC	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	200
PsrI	GAACNNNNNNTAC	2 cut(s)	261, 293
PsuI	RGATCY	1 cut(s)	608
PsyI	GACNNNGTC	1 cut(s)	808
RsaI	GTAC	3 cut(s)	366, 737, 848
RsaNI	GTAC	3 cut(s)	365, 736, 847
SaqAI	TTAA	4 cut(s)	57, 564, 636, 720
SatI	GCNGC	5 cut(s)	293, 534, 629, 632, 774
Sau3AI	GATC	3 cut(s)	183, 445, 608
Sau96I	GGNCC	1 cut(s)	200
SchI	GAGTC	2 cut(s)	102, 426
ScrFI	CCNGG	1 cut(s)	481
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	8 cut(s)	130, 193, 342, 370, 502, 645, 702, 775
SfaNI	GCATC	2 cut(s)	22, 146
SinI	GGWCC	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
SnaBI	TACGTA	1 cut(s)	643
SsiI	CCGC	3 cut(s)	242, 254, 631
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	7 cut(s)	171, 176, 230, 239, 437, 671, 770
StyD4I	CCNGG	1 cut(s)	479
StyI	CCWWGG	2 cut(s)	528, 604
TaaI	ACNGT	3 cut(s)	22, 389, 826
TaiI	ACGT	2 cut(s)	370, 645
TaqI	TCGA	2 cut(s)	96, 383
TatI	WGTACW	1 cut(s)	735
TauI	GCSGC	1 cut(s)	634
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	4 cut(s)	57, 564, 636, 720
Tru9I	TTAA	4 cut(s)	57, 564, 636, 720
TscAI	CASTG	2 cut(s)	758, 829
TseI	GCWGC	4 cut(s)	292, 533, 628, 773
TspDTI	ATGAA	5 cut(s)	314, 420, 431, 483, 643
TspGWI	ACGGA	1 cut(s)	830
TspRI	CASTG	2 cut(s)	758, 829
Tth111I	GACNNNGTC	1 cut(s)	808
Van91I	CCANNNNNTGG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	3 cut(s)	98, 570, 841
XmnI	GAANNNNTTC	1 cut(s)	70
XspI	CTAG	7 cut(s)	171, 176, 230, 239, 437, 671, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.