Prupe.3G123500_v2.0.a1

GDSL esterase lipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Reverse (-)
11058585 .. 11059549
965 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G123500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 564 bp
ATGCTCCAGATCCGACGAGCCCAGCAACGAAGCCAGACTGGGCATACTGGAGCTGGCCAACATGATCAGCGTCCCCATGTCCCTAAACGCCGTCGTTCGCCTCCAAGCTCGCCTCCCTCTGCGACAGATCCGGAGAGTTTTAAAGTTCACTTGGGTCCTCCTCCTCAAAGCTCACAGAGCCGATTTACCTTTTTTGGTGACTCAATCACCGAGGAGTCTTTCGGTGATGGTGGCTGGGGTGCCTCTCTTGCCCATCATTTCTCTCGCACGGTTGACGTGGTGTTAAGAGGGTACAGTGGCTACAACACCAGGTGGGCTCTGCAAGTTTTGGACAGGGTCTTTCCGAGCAGTGAAAACAGAGAAGATGCTCCACTAGCTGTCACCGTCTCCTTTGGCGCTAATGATGCTTGCCTCCCCGATAGGTGCTCTACTTTTCAACACGTGCCTGTCAATGAGTACAAGCATAATCTCCACTCCATTGTCTCCTTTCTCAAGGATGATGGGGCGGATGAGATTAAAGGAGCAGCACCCACCGAAATGATGAGATTCCCACCATCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL Lipase_GDSL_2

Protein Analysis

188

Amino Acids

20.72

Weight (kDa)

7.14

Isoelectric Point (pI)

73.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 239
AccIII TCCGGA 1 cut(s) 130
AciI CCGC 1 cut(s) 506
AclWI GGATC 2 cut(s) 4, 122
AcoI YGGCCR 1 cut(s) 55
AcvI CACGTG 1 cut(s) 442
AdeI CACNNNGTG 1 cut(s) 312
AfaI GTAC 2 cut(s) 293, 458
AflIII ACRYGT 1 cut(s) 439
AgsI TTSAA 1 cut(s) 437
AjiI CACGTC 1 cut(s) 277
AjnI CCWGG 1 cut(s) 308
AluBI AGCT 4 cut(s) 53, 108, 171, 377
AluI AGCT 4 cut(s) 53, 108, 171, 377
Alw21I GWGCWC 1 cut(s) 428
Alw26I GTCTC 2 cut(s) 391, 487
AlwI GGATC 2 cut(s) 4, 122
Aor13HI TCCGGA 1 cut(s) 130
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 524
AspLEI GCGC 1 cut(s) 398
AspS9I GGNCC 1 cut(s) 155
AsuHPI GGTGA 4 cut(s) 199, 209, 236, 373
AvaII GGWCC 1 cut(s) 155
BalI TGGCCA 1 cut(s) 57
BanI GGYRCC 1 cut(s) 239
BanII GRGCYC 2 cut(s) 22, 319
BbrPI CACGTG 1 cut(s) 442
Bbv12I GWGCWC 1 cut(s) 428
BbvI GCAGC 1 cut(s) 536
BccI CCATC 4 cut(s) 221, 261, 494, 562
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 310
BclI TGATCA 1 cut(s) 64
BcoDI GTCTC 2 cut(s) 391, 487
BfaI CTAG 1 cut(s) 374
BfoI RGCGCY 1 cut(s) 399
BisI GCNGC 1 cut(s) 525
BlsI GCNGC 1 cut(s) 526
Bme1390I CCNGG 1 cut(s) 310
Bme18I GGWCC 1 cut(s) 155
BmgBI CACGTC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 2 cut(s) 156, 241
BmrFI CCNGG 1 cut(s) 310
BmrI ACTGGG 1 cut(s) 48
BmsI GCATC 2 cut(s) 355, 394
BmuI ACTGGG 1 cut(s) 48
BpmI CTGGAG 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 476
BsaAI YACGTR 1 cut(s) 442
BsaJI CCNNGG 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 130
Bse1I ACTGG 2 cut(s) 43, 52
BseAI TCCGGA 1 cut(s) 130
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 2 cut(s) 502, 514
BseNI ACTGG 2 cut(s) 43, 52
BseRI GAGGAG 3 cut(s) 150, 153, 227
BseXI GCAGC 1 cut(s) 536
BseYI CCCAGC 2 cut(s) 21, 234
BshFI GGCC 1 cut(s) 57
BshNI GGYRCC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 428
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 2 cut(s) 57, 65
BsmAI GTCTC 2 cut(s) 391, 487
BsmBI CGTCTC 1 cut(s) 391
BsmFI GGGAC 2 cut(s) 57, 65
BsnI GGCC 1 cut(s) 57
Bsp1286I GDGCHC 3 cut(s) 22, 319, 428
Bsp13I TCCGGA 1 cut(s) 130
Bsp143I GATC 3 cut(s) 9, 64, 127
BspACI CCGC 1 cut(s) 506
BspANI GGCC 1 cut(s) 57
BspEI TCCGGA 1 cut(s) 130
BspLI GGNNCC 2 cut(s) 156, 241
BspPI GGATC 2 cut(s) 4, 122
BspT107I GGYRCC 1 cut(s) 239
BsrI ACTGG 2 cut(s) 43, 52
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 3 cut(s) 9, 64, 127
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 3 cut(s) 271, 296, 385
BstBAI YACGTR 1 cut(s) 442
BstC8I GCNNGC 3 cut(s) 55, 110, 409
BstF5I GGATG 2 cut(s) 502, 514
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 3 cut(s) 12, 67, 130
BstMAI GTCTC 2 cut(s) 391, 487
BstMBI GATC 3 cut(s) 9, 64, 127
BstMWI GCNNNNNNNGC 4 cut(s) 177, 248, 374, 404
BstNI CCWGG 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 536
BstX2I RGATCY 2 cut(s) 9, 127
BstYI RGATCY 2 cut(s) 9, 127
BsuRI GGCC 1 cut(s) 57
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 2 cut(s) 502, 514
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 2 cut(s) 301, 355
Cac8I GCNNGC 3 cut(s) 55, 110, 409
CfoI GCGC 1 cut(s) 398
Cfr13I GGNCC 1 cut(s) 155
CseI GACGC 1 cut(s) 59
CsiI ACCWGGT 1 cut(s) 308
Csp6I GTAC 2 cut(s) 292, 457
CviAII CATG 2 cut(s) 62, 77
CviQI GTAC 2 cut(s) 292, 457
DpnI GATC 3 cut(s) 11, 66, 129
DpnII GATC 3 cut(s) 9, 64, 127
DraI TTTAAA 1 cut(s) 142
DraIII CACNNNGTG 1 cut(s) 312
EaeI YGGCCR 1 cut(s) 55
EciI GGCGGA 1 cut(s) 521
Eco24I GRGCYC 2 cut(s) 22, 319
Eco47I GGWCC 1 cut(s) 155
Eco72I CACGTG 1 cut(s) 442
EcoO109I RGGNCCY 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 308
EcoT38I GRGCYC 2 cut(s) 22, 319
Esp3I CGTCTC 1 cut(s) 391
FaeI CATG 2 cut(s) 65, 80
FaiI YATR 4 cut(s) 45, 63, 78, 465
FaqI GGGAC 2 cut(s) 57, 65
FatI CATG 2 cut(s) 61, 76
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 525
FokI GGATG 2 cut(s) 509, 521
FriOI GRGCYC 2 cut(s) 22, 319
Fsp4HI GCNGC 1 cut(s) 525
FspBI CTAG 1 cut(s) 374
GlaI GCGC 1 cut(s) 397
GluI GCNGC 1 cut(s) 525
GsaI CCCAGC 2 cut(s) 25, 238
GsuI CTGGAG 1 cut(s) 69
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 131
HgaI GACGC 1 cut(s) 59
HhaI GCGC 1 cut(s) 398
Hin1II CATG 2 cut(s) 65, 80
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 3 cut(s) 200, 215, 546
HpaII CCGG 1 cut(s) 131
HphI GGTGA 4 cut(s) 199, 209, 236, 373
Hpy166II GTNNAC 2 cut(s) 148, 274
Hpy188I TCNGA 2 cut(s) 14, 345
Hpy188III TCNNGA 2 cut(s) 7, 131
Hpy8I GTNNAC 2 cut(s) 148, 274
Hpy99I CGWCG 2 cut(s) 18, 96
HpyCH4III ACNGT 3 cut(s) 271, 296, 385
HpyCH4IV ACGT 2 cut(s) 276, 441
HpyCH4V TGCA 1 cut(s) 322
HpyF10VI GCNNNNNNNGC 4 cut(s) 177, 248, 374, 404
HpySE526I ACGT 2 cut(s) 276, 441
Hsp92II CATG 2 cut(s) 65, 80
HspAI GCGC 1 cut(s) 396
Kpn2I TCCGGA 1 cut(s) 130
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 3 cut(s) 9, 64, 127
LmnI GCTCC 4 cut(s) 9, 50, 373, 521
Lsp1109I GCAGC 1 cut(s) 536
LweI GCATC 2 cut(s) 355, 394
MabI ACCWGGT 1 cut(s) 308
MaeI CTAG 1 cut(s) 374
MaeII ACGT 2 cut(s) 276, 441
MaeIII GTNAC 2 cut(s) 197, 379
MalI GATC 3 cut(s) 11, 66, 129
MboI GATC 3 cut(s) 9, 64, 127
MboII GAAGA 1 cut(s) 374
MflI RGATCY 2 cut(s) 9, 127
MhlI GDGCHC 3 cut(s) 22, 319, 428
MlsI TGGCCA 1 cut(s) 57
MluNI TGGCCA 1 cut(s) 57
MlyI GAGTC 2 cut(s) 194, 224
MmeI TCCRAC 1 cut(s) 37
Mox20I TGGCCA 1 cut(s) 57
MroI TCCGGA 1 cut(s) 130
MscI TGGCCA 1 cut(s) 57
MseI TTAA 4 cut(s) 141, 284, 516, 562
MslI CAYNNNNRTG 1 cut(s) 536
Msp20I TGGCCA 1 cut(s) 57
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 310
MvaI CCWGG 1 cut(s) 310
MwoI GCNNNNNNNGC 4 cut(s) 177, 248, 374, 404
NdeII GATC 3 cut(s) 9, 64, 127
NlaIII CATG 2 cut(s) 65, 80
NlaIV GGNNCC 2 cut(s) 156, 241
NmuCI GTSAC 2 cut(s) 197, 379
PfeI GAWTC 1 cut(s) 546
PflFI GACNNNGTC 1 cut(s) 335
PkrI GCNGC 1 cut(s) 526
PleI GAGTC 2 cut(s) 194, 223
PmaCI CACGTG 1 cut(s) 442
PmlI CACGTG 1 cut(s) 442
PpsI GAGTC 2 cut(s) 194, 223
Ppu21I YACGTR 1 cut(s) 442
PpuMI RGGWCCY 1 cut(s) 155
Psp5II RGGWCCY 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 308
PspCI CACGTG 1 cut(s) 442
PspFI CCCAGC 2 cut(s) 21, 234
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 2 cut(s) 156, 241
PspPI GGNCC 1 cut(s) 155
PspPPI RGGWCCY 1 cut(s) 155
PsuI RGATCY 2 cut(s) 9, 127
PsyI GACNNNGTC 1 cut(s) 335
RsaI GTAC 2 cut(s) 293, 458
RsaNI GTAC 2 cut(s) 292, 457
RseI CAYNNNNRTG 1 cut(s) 536
SaqAI TTAA 4 cut(s) 141, 284, 516, 562
SatI GCNGC 1 cut(s) 525
Sau3AI GATC 3 cut(s) 9, 64, 127
Sau96I GGNCC 1 cut(s) 155
SchI GAGTC 2 cut(s) 194, 224
ScrFI CCNGG 1 cut(s) 310
SduI GDGCHC 3 cut(s) 22, 319, 428
SetI ASST 9 cut(s) 55, 110, 173, 191, 279, 314, 379, 425, 444
SexAI ACCWGGT 1 cut(s) 308
SfaNI GCATC 2 cut(s) 355, 394
SinI GGWCC 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 536
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
SsiI CCGC 1 cut(s) 506
SspMI CTAG 1 cut(s) 374
StyD4I CCNGG 1 cut(s) 308
TaaI ACNGT 3 cut(s) 271, 296, 385
TaiI ACGT 2 cut(s) 279, 444
TatI WGTACW 1 cut(s) 456
TfiI GAWTC 1 cut(s) 546
Tru1I TTAA 4 cut(s) 141, 284, 516, 562
Tru9I TTAA 4 cut(s) 141, 284, 516, 562
TscAI CASTG 2 cut(s) 301, 355
TseFI GTSAC 2 cut(s) 197, 379
TseI GCWGC 1 cut(s) 524
Tsp45I GTSAC 2 cut(s) 197, 379
TspRI CASTG 2 cut(s) 301, 355
Tth111I GACNNNGTC 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 155
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.