Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

11067803 .. 11071402

Gene Structure 3600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G123600.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGATCGAAATCCAGAAATTCCCGCAAAACCCGCAAATAGGAACCCTAGCAACTCCAAAATCTTTACTGTTGCCTTTGCACCTCCTGTTTCCCGAACTGAAGACTTCATCTTTGGCTAATCGAAGAAGACAATCAAAGCCTTTTAAGGTTTTTTATGCCTTAACCATGGCAGCTATGGGAATTTCTCAGTCGTGCTCCTTTGCTGTTGATTTTAGTAAAGCCAAGAATGCTGCTGCTTCCATATTTGCAATAATAGACAGGAAGTCAAAGATAGACTCTAGTGACGAGTCTGGTGTGAAATTGGACATCGTAAAGGGAGAGATTGAGCTTCACCATGTAATCTTTAAATATCCATCTAGGCAAGACATACAGATTTTCCGAGACCTAAGTTTGACTATCCATTGTGGCAATACAGTTGCCTTGGTTGGAGAAAGTGGGAGTGGAAAATCCTCAGTAGTAGCATTGTTGCAAAGATTTTATGATCCGGATTCAGGTCATATCACACTTGATGGAATTGAACTTGGAAAATTCCAATTGAAATGGTTAAGGCAACAGATGGGGCTTGTGAGCCAAGAACCTGCTTTATTTAACGACACCATCCGCGCCAACATTGCATATGGAAAAGAAGGAGATGCAACTGAGGCCGAAATTATAGCTGCATCCGAGTTGGCCAATGCCTACAGGTTCATTAGTAGCTTAGGACAGGTGAAGGTAACCAAGGTGTTTCCTAAGGCATCTCTGTCCTTTCGAAGCATTTTTTGGGGCTTGATCTTCGAACTCAGGCTCAATGGGCAATTTCATCCATTTTGCTATTTACGGCAGCCCAGACCTGTAGTAGCTGCCGGAACGAAAAGCCCCTACATAAATAGGCAACTTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

294

Amino Acids

32.59

Weight (kDa)

9.51

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	586
AccII	CGCG	1 cut(s)	603
AccIII	TCCGGA	1 cut(s)	484
AciI	CCGC	3 cut(s)	23, 32, 601
AclWI	GGATC	1 cut(s)	476
AcoI	YGGCCR	1 cut(s)	669
AcsI	RAATTY	3 cut(s)	17, 180, 527
AcuI	CTGAAG	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	38, 491
AgsI	TTSAA	2 cut(s)	518, 538
AhdI	GACNNNNNGTC	1 cut(s)	262
AjuI	GAANNNNNNNTTGG	2 cut(s)	742, 774
AluBI	AGCT	5 cut(s)	173, 328, 656, 696, 839
AluI	AGCT	5 cut(s)	173, 328, 656, 696, 839
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	476
Aor13HI	TCCGGA	1 cut(s)	484
AoxI	GGCC	2 cut(s)	642, 669
ApeKI	GCWGC	6 cut(s)	170, 230, 233, 656, 820, 839
ApoI	RAATTY	3 cut(s)	17, 180, 527
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AspLEI	GCGC	1 cut(s)	605
AsuHPI	GGTGA	2 cut(s)	323, 718
AsuII	TTCGAA	2 cut(s)	748, 774
AxyI	CCTNAGG	1 cut(s)	729
BalI	TGGCCA	1 cut(s)	671
BbsI	GAAGAC	2 cut(s)	107, 133
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	6 cut(s)	182, 217, 220, 643, 826, 832
BccI	CCATC	4 cut(s)	361, 503, 550, 605
BceAI	ACGGC	1 cut(s)	833
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	4 cut(s)	47, 279, 357, 880
BfmI	CTRYAG	2 cut(s)	679, 831
BfuAI	ACCTGC	1 cut(s)	586
BisI	GCNGC	6 cut(s)	171, 231, 234, 657, 821, 840
BlsI	GCNGC	6 cut(s)	172, 232, 235, 658, 822, 841
BmeRI	GACNNNNNGTC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	43
BmsI	GCATC	3 cut(s)	622, 668, 743
BpiI	GAAGAC	2 cut(s)	107, 133
Bpu10I	CCTNAGC	1 cut(s)	697
Bpu14I	TTCGAA	2 cut(s)	748, 774
BsaBI	GATNNNNATC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	375
BsaJI	CCNNGG	3 cut(s)	165, 420, 717
BsaWI	WCCGGW	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 491
Bse21I	CCTNAGG	1 cut(s)	729
Bse3DI	GCAATG	1 cut(s)	609
Bse8I	GATNNNNATC	1 cut(s)	8
BseAI	TCCGGA	1 cut(s)	484
BseDI	CCNNGG	3 cut(s)	165, 420, 717
BseGI	GGATG	3 cut(s)	597, 659, 799
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	38, 491
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	4 cut(s)	200, 465, 630, 793
BseXI	GCAGC	6 cut(s)	182, 217, 220, 643, 826, 832
Bsh1236I	CGCG	1 cut(s)	603
BshFI	GGCC	2 cut(s)	644, 671
BsiHKAI	GWGCWC	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	485, 843
BslI	CCNNNNNNNGG	2 cut(s)	38, 491
BsmAI	GTCTC	1 cut(s)	375
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	2 cut(s)	644, 671
Bso31I	GGTCTC	1 cut(s)	375
Bsp119I	TTCGAA	2 cut(s)	748, 774
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp13I	TCCGGA	1 cut(s)	484
Bsp143I	GATC	3 cut(s)	3, 481, 768
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	3 cut(s)	23, 32, 601
BspANI	GGCC	2 cut(s)	644, 671
BspCNI	CTCAG	4 cut(s)	199, 464, 631, 792
BspEI	TCCGGA	1 cut(s)	484
BspFNI	CGCG	1 cut(s)	603
BspLI	GGNNCC	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	586
BspPI	GGATC	1 cut(s)	476
BspT104I	TTCGAA	2 cut(s)	748, 774
BspTNI	GGTCTC	1 cut(s)	375
BsrDI	GCAATG	1 cut(s)	609
BssECI	CCNNGG	3 cut(s)	165, 420, 717
BssMI	GATC	3 cut(s)	3, 481, 768
BssT1I	CCWWGG	3 cut(s)	165, 420, 717
Bst4CI	ACNGT	2 cut(s)	69, 415
BstBI	TTCGAA	2 cut(s)	748, 774
BstDEI	CTNAG	7 cut(s)	186, 386, 451, 639, 697, 729, 779
BstDSI	CCRYGG	1 cut(s)	165
BstEII	GGTNACC	1 cut(s)	712
BstF5I	GGATG	3 cut(s)	597, 659, 799
BstFNI	CGCG	1 cut(s)	603
BstHHI	GCGC	1 cut(s)	605
BstKTI	GATC	3 cut(s)	6, 484, 771
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	3 cut(s)	3, 481, 768
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 227, 611, 641, 790
BstPI	GGTNACC	1 cut(s)	712
BstSFI	CTRYAG	2 cut(s)	679, 831
BstUI	CGCG	1 cut(s)	603
BstV1I	GCAGC	6 cut(s)	182, 217, 220, 643, 826, 832
BstV2I	GAAGAC	2 cut(s)	107, 133
Bsu36I	CCTNAGG	1 cut(s)	729
BsuRI	GGCC	2 cut(s)	644, 671
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	3 cut(s)	597, 659, 799
BveI	ACCTGC	1 cut(s)	586
CfoI	GCGC	1 cut(s)	605
CviAII	CATG	2 cut(s)	166, 335
DdeI	CTNAG	7 cut(s)	186, 386, 451, 639, 697, 729, 779
DpnI	GATC	3 cut(s)	5, 483, 770
DpnII	GATC	3 cut(s)	3, 481, 768
DraI	TTTAAA	1 cut(s)	346
DriI	GACNNNNNGTC	1 cut(s)	262
EaeI	YGGCCR	1 cut(s)	669
Eam1105I	GACNNNNNGTC	1 cut(s)	262
Eco130I	CCWWGG	3 cut(s)	165, 420, 717
Eco31I	GGTCTC	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	119
Eco81I	CCTNAGG	1 cut(s)	729
Eco91I	GGTNACC	1 cut(s)	712
EcoO65I	GGTNACC	1 cut(s)	712
EcoT14I	CCWWGG	3 cut(s)	165, 420, 717
ErhI	CCWWGG	3 cut(s)	165, 420, 717
FaeI	CATG	2 cut(s)	169, 338
FatI	CATG	2 cut(s)	165, 334
FauI	CCCGC	2 cut(s)	30, 39
FauNDI	CATATG	1 cut(s)	616
Fnu4HI	GCNGC	6 cut(s)	171, 231, 234, 657, 821, 840
FokI	GGATG	3 cut(s)	584, 646, 786
Fsp4HI	GCNGC	6 cut(s)	171, 231, 234, 657, 821, 840
FspBI	CTAG	4 cut(s)	47, 279, 357, 880
GlaI	GCGC	1 cut(s)	604
GluI	GCNGC	6 cut(s)	171, 231, 234, 657, 821, 840
HaeIII	GGCC	2 cut(s)	644, 671
HapII	CCGG	2 cut(s)	485, 843
HhaI	GCGC	1 cut(s)	605
Hin1II	CATG	2 cut(s)	169, 338
Hin6I	GCGC	1 cut(s)	603
HinP1I	GCGC	1 cut(s)	603
HinfI	GANTC	3 cut(s)	275, 287, 488
HpaII	CCGG	2 cut(s)	485, 843
HphI	GGTGA	2 cut(s)	323, 718
Hpy188I	TCNGA	2 cut(s)	380, 664
Hpy188III	TCNNGA	3 cut(s)	13, 92, 485
HpyAV	CCTTC	2 cut(s)	620, 703
HpyCH4III	ACNGT	2 cut(s)	69, 415
HpyCH4V	TGCA	6 cut(s)	79, 248, 469, 614, 635, 659
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 227, 611, 641, 790
HpyF3I	CTNAG	7 cut(s)	186, 386, 451, 639, 697, 729, 779
Hsp92II	CATG	2 cut(s)	169, 338
HspAI	GCGC	1 cut(s)	603
Kpn2I	TCCGGA	1 cut(s)	484
Kzo9I	GATC	3 cut(s)	3, 481, 768
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	6 cut(s)	182, 217, 220, 643, 826, 832
LweI	GCATC	3 cut(s)	622, 668, 743
MaeI	CTAG	4 cut(s)	47, 279, 357, 880
MaeIII	GTNAC	2 cut(s)	281, 712
MalI	GATC	3 cut(s)	5, 483, 770
MboI	GATC	3 cut(s)	3, 481, 768
MboII	GAAGA	4 cut(s)	112, 135, 138, 763
MfeI	CAATTG	1 cut(s)	533
MhlI	GDGCHC	1 cut(s)	197
MlsI	TGGCCA	1 cut(s)	671
MluCI	AATT	8 cut(s)	17, 180, 299, 513, 527, 533, 648, 794
MluNI	TGGCCA	1 cut(s)	671
MlyI	GAGTC	2 cut(s)	269, 296
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	3 cut(s)	92, 460, 634
Mox20I	TGGCCA	1 cut(s)	671
MroI	TCCGGA	1 cut(s)	484
MscI	TGGCCA	1 cut(s)	671
MseI	TTAA	5 cut(s)	144, 161, 345, 545, 588
Msp20I	TGGCCA	1 cut(s)	671
MspI	CCGG	2 cut(s)	485, 843
MunI	CAATTG	1 cut(s)	533
Mva1269I	GAATGC	1 cut(s)	232
MvnI	CGCG	1 cut(s)	603
MwoI	GCNNNNNNNGC	5 cut(s)	31, 227, 611, 641, 790
NcoI	CCATGG	1 cut(s)	165
NdeI	CATATG	1 cut(s)	616
NdeII	GATC	3 cut(s)	3, 481, 768
NlaIII	CATG	2 cut(s)	169, 338
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	281
NspV	TTCGAA	2 cut(s)	748, 774
PctI	GAATGC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	488
PkrI	GCNGC	6 cut(s)	172, 232, 235, 658, 822, 841
PleI	GAGTC	2 cut(s)	269, 295
PpsI	GAGTC	2 cut(s)	269, 295
PspEI	GGTNACC	1 cut(s)	712
PspN4I	GGNNCC	1 cut(s)	43
SaqAI	TTAA	5 cut(s)	144, 161, 345, 545, 588
SatI	GCNGC	6 cut(s)	171, 231, 234, 657, 821, 840
Sau3AI	GATC	3 cut(s)	3, 481, 768
SchI	GAGTC	2 cut(s)	269, 296
SduI	GDGCHC	1 cut(s)	197
SfaNI	GCATC	3 cut(s)	622, 668, 743
SfcI	CTRYAG	2 cut(s)	679, 831
SfuI	TTCGAA	2 cut(s)	748, 774
Sse9I	AATT	8 cut(s)	17, 180, 299, 513, 527, 533, 648, 794
SsiI	CCGC	3 cut(s)	23, 32, 601
SspMI	CTAG	4 cut(s)	47, 279, 357, 880
StyI	CCWWGG	3 cut(s)	165, 420, 717
TaaI	ACNGT	2 cut(s)	69, 415
TaqI	TCGA	4 cut(s)	6, 121, 748, 774
TasI	AATT	8 cut(s)	17, 180, 299, 513, 527, 533, 648, 794
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	5 cut(s)	144, 161, 345, 545, 588
Tru9I	TTAA	5 cut(s)	144, 161, 345, 545, 588
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	6 cut(s)	170, 230, 233, 656, 820, 839
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	3 cut(s)	96, 676, 788
XapI	RAATTY	3 cut(s)	17, 180, 527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XspI	CTAG	4 cut(s)	47, 279, 357, 880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.