Prupe.3G129100_v2.0.a1
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Reverse (-)
13030199 .. 13031351
1153 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G129100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 984 bp
ATGGGTAGTGAAGTGAGAGCAAGTCATGAGCTACTCCAAGCACAAGCCCACATTTGGAACCACATTTTCAGCTTCATAAATTCTATGTCCCTCAAATGTGCAGTTCAATTAGGTATCCCAGATGTCATCCAAAAACATGGTCAACCCATAACTCTTTCCGAGCTTGTCTCAGCCCTACCAATTTCCCCAACAAAAGCTCATTTCATCCCACGCCTCATGCGAATCTTAGTCCACTCTGGCTTCTTTGCTCAAGAAAGTCTGAGTGGCGGTGAACAAGGTTATGTACTAACAGACGCCTCCGCACTCCTCCTGAAAGATAATCCGATGAGCGCAAGGCCCTTTTTACTTGCCATGCTCAATCCCATCTTAACCAATCCATGGCAGTATTTGACCACTTGGTTCCAAAATGACAATCCTACGCCGTTTCATGTGGACCCGACTCTTGCACATTTTTTCAATGACGCCATGGCTAGCGATGCCCGGTTGATCTCGAGCTTGATGATTGATGACTGCAAGGGGGTGTTTCATGGAGTGGATTCTTTGGTTGACGTGGGCGGTGGGACGGGAACCATGGCCAAGTCCATTGCTGATGCCTTCCCTCATATGAAATGCACTGTACTTGATCTCCCTCATGTAGTTGCTGACCTAAAAGGGAGTCAGAAATTGGAATATGTTGCAGGGGACATGTTTGAGGTTGTTCCTGAGGCTGATGCTATTTTTTTGAAGTGGATATTGCACGACTTTAGTGATGAAGAATGCGTGAAAATACTTGAGCGATGTAAAGAGGCAATTACAAAAGAGGGCAAGAAAGGCAAGGAATCTGGGGAAACACAACTTTTCTTCGATATGCTGATGATGGTCTTGGCTACAGGAAAAGAAAGGAATGAGAAAGAATGGGCTAAGCTGTTTTCTGACTTAGGTTTCAGCCACTATAAGATTACTCCCTGTTTGGGTTTAAGGTCTCTCATTGAGGTTTATCCTTAA

Protein Analysis

328

Amino Acids

36.34

Weight (kDa)

5.59

Isoelectric Point (pI)

27.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 378
AciI CCGC 3 cut(s) 267, 300, 555
AcoI YGGCCR 1 cut(s) 573
AcsI RAATTY 1 cut(s) 79
AcyI GRCGYC 2 cut(s) 294, 462
AfaI GTAC 2 cut(s) 285, 618
AfiI CCNNNNNNNGG 3 cut(s) 54, 378, 950
AflIII ACRYGT 1 cut(s) 684
AgsI TTSAA 3 cut(s) 107, 457, 724
AjiI CACGTC 1 cut(s) 550
AluBI AGCT 6 cut(s) 31, 72, 163, 197, 495, 904
AluI AGCT 6 cut(s) 31, 72, 163, 197, 495, 904
Alw26I GTCTC 2 cut(s) 172, 966
Ama87I CYCGRG 1 cut(s) 490
AoxI GGCC 2 cut(s) 335, 573
ApoI RAATTY 1 cut(s) 79
ArsI GACNNNNNNTTYG 2 cut(s) 124, 156
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 2 cut(s) 336, 433
AsuC2I CCSGG 1 cut(s) 481
AsuHPI GGTGA 1 cut(s) 281
AsuNHI GCTAGC 1 cut(s) 470
AvaI CYCGRG 1 cut(s) 490
AvaII GGWCC 1 cut(s) 433
AxyI CCTNAGG 1 cut(s) 702
BalI TGGCCA 1 cut(s) 575
BccI CCATC 2 cut(s) 371, 850
BceAI ACGGC 1 cut(s) 406
BciVI GTATCC 1 cut(s) 125
BcnI CCSGG 1 cut(s) 481
BcoDI GTCTC 2 cut(s) 172, 966
BfaI CTAG 1 cut(s) 471
BfmI CTRYAG 1 cut(s) 867
BfuI GTATCC 1 cut(s) 125
BlpI GCTNAGC 1 cut(s) 900
Bme1390I CCNGG 1 cut(s) 481
Bme18I GGWCC 1 cut(s) 433
BmeT110I CYCGRG 1 cut(s) 490
BmgBI CACGTC 1 cut(s) 550
BmgT120I GGNCC 2 cut(s) 336, 433
BmiI GGNNCC 4 cut(s) 59, 401, 435, 568
BmrFI CCNGG 1 cut(s) 481
BmsI GCATC 3 cut(s) 466, 580, 700
BmtI GCTAGC 1 cut(s) 474
BplI GAGNNNNNCTC 2 cut(s) 152, 184
Bpu1102I GCTNAGC 1 cut(s) 900
BpuEI CTTGAG 2 cut(s) 234, 791
BpuMI CCSGG 1 cut(s) 481
BsaHI GRCGYC 2 cut(s) 294, 462
BsaI GGTCTC 1 cut(s) 966
BsaJI CCNNGG 3 cut(s) 377, 465, 570
BsaXI ACNNNNNCTCC 2 cut(s) 609, 639
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 378, 950
Bse21I CCTNAGG 1 cut(s) 702
Bse3DI GCAATG 1 cut(s) 582
BseDI CCNNGG 3 cut(s) 377, 465, 570
BseGI GGATG 2 cut(s) 126, 204
BseLI CCNNNNNNNGG 3 cut(s) 54, 378, 950
BseMI GCAATG 1 cut(s) 582
BseMII CTCAG 3 cut(s) 183, 251, 693
BseRI GAGGAG 1 cut(s) 296
BsgI GTGCAG 1 cut(s) 120
BshFI GGCC 2 cut(s) 337, 575
BsiHKCI CYCGRG 1 cut(s) 490
BsiSI CCGG 1 cut(s) 481
BslFI GGGAC 3 cut(s) 73, 574, 695
BslI CCNNNNNNNGG 3 cut(s) 54, 378, 950
BsmAI GTCTC 2 cut(s) 172, 966
BsmFI GGGAC 3 cut(s) 73, 574, 695
BsmI GAATGC 1 cut(s) 761
BsnI GGCC 2 cut(s) 337, 575
Bso31I GGTCTC 1 cut(s) 966
BsoBI CYCGRG 1 cut(s) 490
Bsp143I GATC 2 cut(s) 486, 622
Bsp1720I GCTNAGC 1 cut(s) 900
Bsp19I CCATGG 3 cut(s) 377, 465, 570
BspACI CCGC 3 cut(s) 267, 300, 555
BspANI GGCC 2 cut(s) 337, 575
BspCNI CTCAG 3 cut(s) 182, 252, 694
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 4 cut(s) 59, 401, 435, 568
BspOI GCTAGC 1 cut(s) 474
BspTNI GGTCTC 1 cut(s) 966
BsrDI GCAATG 1 cut(s) 582
BssECI CCNNGG 3 cut(s) 377, 465, 570
BssMI GATC 2 cut(s) 486, 622
BssNI GRCGYC 2 cut(s) 294, 462
BssT1I CCWWGG 3 cut(s) 377, 465, 570
Bst4CI ACNGT 1 cut(s) 616
BstACI GRCGYC 2 cut(s) 294, 462
BstC8I GCNNGC 1 cut(s) 472
BstDEI CTNAG 6 cut(s) 169, 226, 260, 702, 900, 916
BstDSI CCRYGG 3 cut(s) 377, 465, 570
BstF5I GGATG 2 cut(s) 126, 204
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 2 cut(s) 489, 625
BstMAI GTCTC 2 cut(s) 172, 966
BstMBI GATC 2 cut(s) 486, 622
BstMWI GCNNNNNNNGC 2 cut(s) 476, 810
BstNSI RCATGY 1 cut(s) 688
BstSCI CCNGG 1 cut(s) 479
BstSFI CTRYAG 1 cut(s) 867
BstXI CCANNNNNNTGG 1 cut(s) 137
Bsu36I CCTNAGG 1 cut(s) 702
BsuI GTATCC 1 cut(s) 125
BsuRI GGCC 2 cut(s) 337, 575
BtgI CCRYGG 3 cut(s) 377, 465, 570
BtgZI GCGATG 2 cut(s) 489, 790
BtrI CACGTC 1 cut(s) 550
BtsCI GGATG 2 cut(s) 126, 204
BtsIMutI CAGTG 1 cut(s) 612
Cac8I GCNNGC 1 cut(s) 472
CciI TCATGA 1 cut(s) 25
CfoI GCGC 1 cut(s) 332
Cfr13I GGNCC 2 cut(s) 336, 433
CseI GACGC 2 cut(s) 302, 470
Csp6I GTAC 2 cut(s) 284, 617
CviQI GTAC 2 cut(s) 284, 617
DdeI CTNAG 6 cut(s) 169, 226, 260, 702, 900, 916
DpnI GATC 2 cut(s) 488, 624
DpnII GATC 2 cut(s) 486, 622
EaeI YGGCCR 1 cut(s) 573
Eco130I CCWWGG 3 cut(s) 377, 465, 570
Eco31I GGTCTC 1 cut(s) 966
Eco47I GGWCC 1 cut(s) 433
Eco81I CCTNAGG 1 cut(s) 702
Eco88I CYCGRG 1 cut(s) 490
EcoO109I RGGNCCY 1 cut(s) 336
EcoT14I CCWWGG 3 cut(s) 377, 465, 570
ErhI CCWWGG 3 cut(s) 377, 465, 570
FaqI GGGAC 3 cut(s) 73, 574, 695
FauNDI CATATG 1 cut(s) 603
FokI GGATG 2 cut(s) 113, 191
FspBI CTAG 1 cut(s) 471
GlaI GCGC 1 cut(s) 331
HaeIII GGCC 2 cut(s) 337, 575
HapII CCGG 1 cut(s) 481
HgaI GACGC 2 cut(s) 302, 470
HhaI GCGC 1 cut(s) 332
Hin1I GRCGYC 2 cut(s) 294, 462
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HincII GTYRAC 2 cut(s) 143, 547
HindII GTYRAC 2 cut(s) 143, 547
HinfI GANTC 5 cut(s) 222, 439, 536, 655, 818
HpaII CCGG 1 cut(s) 481
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 5 cut(s) 143, 232, 272, 433, 547
Hpy188I TCNGA 5 cut(s) 160, 261, 324, 660, 913
Hpy188III TCNNGA 5 cut(s) 26, 251, 310, 490, 701
Hpy8I GTNNAC 5 cut(s) 143, 232, 272, 433, 547
HpyAV CCTTC 1 cut(s) 604
HpyCH4III ACNGT 1 cut(s) 616
HpyCH4IV ACGT 1 cut(s) 549
HpyCH4V TGCA 6 cut(s) 101, 446, 513, 612, 677, 736
HpyF10VI GCNNNNNNNGC 2 cut(s) 476, 810
HpyF3I CTNAG 6 cut(s) 169, 226, 260, 702, 900, 916
HpySE526I ACGT 1 cut(s) 549
Hsp92I GRCGYC 2 cut(s) 294, 462
HspAI GCGC 1 cut(s) 330
Kzo9I GATC 2 cut(s) 486, 622
LpnPI CCDG 9 cut(s) 132, 222, 323, 494, 663, 714, 807, 855, 958
LweI GCATC 3 cut(s) 466, 580, 700
MaeI CTAG 1 cut(s) 471
MaeII ACGT 1 cut(s) 549
MalI GATC 2 cut(s) 488, 624
MboI GATC 2 cut(s) 486, 622
MboII GAAGA 2 cut(s) 764, 832
MlsI TGGCCA 1 cut(s) 575
MluCI AATT 5 cut(s) 79, 107, 180, 662, 789
MluNI TGGCCA 1 cut(s) 575
MlyI GAGTC 2 cut(s) 433, 664
Mox20I TGGCCA 1 cut(s) 575
MscI TGGCCA 1 cut(s) 575
MseI TTAA 3 cut(s) 368, 956, 982
Msp20I TGGCCA 1 cut(s) 575
MspI CCGG 1 cut(s) 481
MspR9I CCNGG 1 cut(s) 481
Mva1269I GAATGC 1 cut(s) 761
MwoI GCNNNNNNNGC 2 cut(s) 476, 810
NciI CCSGG 1 cut(s) 481
NcoI CCATGG 3 cut(s) 377, 465, 570
NdeI CATATG 1 cut(s) 603
NdeII GATC 2 cut(s) 486, 622
NheI GCTAGC 1 cut(s) 470
NlaIV GGNNCC 4 cut(s) 59, 401, 435, 568
NspI RCATGY 1 cut(s) 688
PaeR7I CTCGAG 1 cut(s) 490
PagI TCATGA 1 cut(s) 25
PciI ACATGT 1 cut(s) 684
PcsI WCGNNNNNNNCGW 1 cut(s) 217
PctI GAATGC 1 cut(s) 761
PfeI GAWTC 3 cut(s) 222, 536, 818
PflMI CCANNNNNTGG 1 cut(s) 378
PleI GAGTC 2 cut(s) 433, 663
PpsI GAGTC 2 cut(s) 433, 663
PscI ACATGT 1 cut(s) 684
PspN4I GGNNCC 4 cut(s) 59, 401, 435, 568
PspPI GGNCC 2 cut(s) 336, 433
RsaI GTAC 2 cut(s) 285, 618
RsaNI GTAC 2 cut(s) 284, 617
SaqAI TTAA 3 cut(s) 368, 956, 982
Sau3AI GATC 2 cut(s) 486, 622
Sau96I GGNCC 2 cut(s) 336, 433
SchI GAGTC 2 cut(s) 433, 664
ScrFI CCNGG 1 cut(s) 481
SfaNI GCATC 3 cut(s) 466, 580, 700
SfcI CTRYAG 1 cut(s) 867
Sfr274I CTCGAG 1 cut(s) 490
SinI GGWCC 1 cut(s) 433
SlaI CTCGAG 1 cut(s) 490
SmlI CTYRAG 3 cut(s) 249, 490, 770
SmoI CTYRAG 3 cut(s) 249, 490, 770
Sse9I AATT 5 cut(s) 79, 107, 180, 662, 789
SsiI CCGC 3 cut(s) 267, 300, 555
SspMI CTAG 1 cut(s) 471
StyD4I CCNGG 1 cut(s) 479
StyI CCWWGG 3 cut(s) 377, 465, 570
TaaI ACNGT 1 cut(s) 616
TaiI ACGT 1 cut(s) 552
TaqI TCGA 2 cut(s) 491, 843
TasI AATT 5 cut(s) 79, 107, 180, 662, 789
TatI WGTACW 2 cut(s) 283, 616
TfiI GAWTC 3 cut(s) 222, 536, 818
Tru1I TTAA 3 cut(s) 368, 956, 982
Tru9I TTAA 3 cut(s) 368, 956, 982
TscAI CASTG 1 cut(s) 619
TspDTI ATGAA 6 cut(s) 64, 193, 416, 515, 620, 765
TspRI CASTG 1 cut(s) 619
Van91I CCANNNNNTGG 1 cut(s) 378
VpaK11BI GGWCC 1 cut(s) 433
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 688
XhoI CTCGAG 1 cut(s) 490
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.