Prupe.3G132100_v2.0.a1

External alternative NAD(P)H-ubiquinone oxidoreductase B1

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
13673636 .. 13676762
3127 bp
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UTR
Exon/CDS
Intron
Prupe.3G132100.5_v2.0.a1.CDS.1

Sequence Viewer

Length: 195 bp
ATGACAATATTAGTTCTTTTGCTGCGACACAAGTTTAAAAGAGATGGTATTGATGTTCAAATGGCATGTCGGGTTGTCAGTGTTTCTAATAAGGAAATCACAATGAAGGTGAAATCCAAGAGAGAGTCTCTGTACAACATGTGTTGGTTGTGTGGTCTACTGGTATTGGGACTCGTCCAGTTGAGAGGGACTTAA

Protein Analysis

65

Amino Acids

7.34

Weight (kDa)

9.94

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024584)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 157
AfaI GTAC 1 cut(s) 134
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 22
ArsI GACNNNNNNTTYG 2 cut(s) 52, 84
AsuHPI GGTGA 1 cut(s) 121
BbvI GCAGC 1 cut(s) 9
BccI CCATC 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 132
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
BplI GAGNNNNNCTC 2 cut(s) 112, 144
Bse1I ACTGG 2 cut(s) 165, 178
BseNI ACTGG 2 cut(s) 165, 178
BseXI GCAGC 1 cut(s) 9
BslFI GGGAC 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 183
Bsp1407I TGTACA 1 cut(s) 132
BsrGI TGTACA 1 cut(s) 132
BsrI ACTGG 2 cut(s) 165, 178
BstAUI TGTACA 1 cut(s) 132
BstMAI GTCTC 1 cut(s) 132
BstNSI RCATGY 2 cut(s) 69, 142
BstV1I GCAGC 1 cut(s) 9
BtsIMutI CAGTG 1 cut(s) 85
Csp6I GTAC 1 cut(s) 133
CviAII CATG 2 cut(s) 66, 139
CviQI GTAC 1 cut(s) 133
DraI TTTAAA 1 cut(s) 37
FaeI CATG 2 cut(s) 69, 142
FaiI YATR 2 cut(s) 67, 140
FaqI GGGAC 1 cut(s) 183
FatI CATG 2 cut(s) 65, 138
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 23
GluI GCNGC 1 cut(s) 23
Hin1II CATG 2 cut(s) 69, 142
HinfI GANTC 2 cut(s) 125, 171
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 158
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 100
Hsp92II CATG 2 cut(s) 69, 142
LpnPI CCDG 2 cut(s) 146, 191
Lsp1109I GCAGC 1 cut(s) 9
MlyI GAGTC 2 cut(s) 134, 165
MnlI CCTC 1 cut(s) 179
MseI TTAA 2 cut(s) 36, 193
NlaIII CATG 2 cut(s) 69, 142
NspI RCATGY 2 cut(s) 69, 142
PciI ACATGT 1 cut(s) 138
PkrI GCNGC 1 cut(s) 24
PleI GAGTC 2 cut(s) 133, 165
PpsI GAGTC 2 cut(s) 133, 165
PscI ACATGT 1 cut(s) 138
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SaqAI TTAA 2 cut(s) 36, 193
SatI GCNGC 1 cut(s) 23
SchI GAGTC 2 cut(s) 134, 165
SetI ASST 1 cut(s) 111
SgeI CNNG 8 cut(s) 43, 78, 83, 130, 151, 173, 185, 190
SspI AATATT 1 cut(s) 9
TatI WGTACW 1 cut(s) 132
Tru1I TTAA 2 cut(s) 36, 193
Tru9I TTAA 2 cut(s) 36, 193
TscAI CASTG 1 cut(s) 85
TseI GCWGC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 119
TspRI CASTG 1 cut(s) 85
XceI RCATGY 2 cut(s) 69, 142
XmiI GTMKAC 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.