Prupe.3G136600_v2.0.a1

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0029120
Physical Location & Seq
Forward (+)
14398881 .. 14400268
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G136600.2_v2.0.a1.CDS.3

Sequence Viewer

Length: 435 bp
ATGCAGGCTTTTCATGTGTTTCATACTTCCTGCCTTATACACTGGATACTTCTGTGTGAGGTTGAGATTGCAAATCAGTCAGCTAATTCAAAAGTGAGAAGAAGATCTAGGAGGAAAAATGCAGCCAAGTGCAATGGACAAGATGGCCAGATGAAAGCTTTGAGCACGCAAATCCATTCTGTATTCTGCCAAGAGTGCCAGGGTACTGGTGCAATCATTGATGGAGATGACCTGGAGAAACCAAATCTCCCTCTGTCTCAGATGTTCAAGTATAAGATAAAGGTGAGTGATGCACGTAGAGCATGGATGAAGAGTCCTGAAATGTTGGTGAATTGCTCGACAGGTTTTCATTTCCCTTCCCAATACGAAGAAGGAATCCAAGTTTCTGAAAAGGTGAAACCATTAAAGTTGCTGCATTTCTACAGAGCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

145

Amino Acids

16.47

Weight (kDa)

9.1

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029120)

Species Orthologous Gene IDs
prunus_persica Prupe.3G136600_v2.0.a1 Prupe.3G136600_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 145
AfaI GTAC 1 cut(s) 205
AgsI TTSAA 2 cut(s) 90, 268
AjnI CCWGG 2 cut(s) 198, 231
AluBI AGCT 2 cut(s) 83, 158
AluI AGCT 2 cut(s) 83, 158
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 261
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 2 cut(s) 122, 412
AsuHPI GGTGA 3 cut(s) 295, 340, 406
BaeI ACNNNNGTAYC 2 cut(s) 38, 71
BalI TGGCCA 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 2 cut(s) 134, 399
BccI CCATC 2 cut(s) 137, 215
BciT130I CCWGG 2 cut(s) 200, 233
BciVI GTATCC 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 421
BfuI GTATCC 1 cut(s) 39
BglII AGATCT 1 cut(s) 104
BisI GCNGC 2 cut(s) 123, 413
BlsI GCNGC 2 cut(s) 124, 414
Bme1390I CCNGG 2 cut(s) 200, 233
BmrFI CCNGG 2 cut(s) 200, 233
BmsI GCATC 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 199
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bse1I ACTGG 2 cut(s) 47, 211
Bse3DI GCAATG 1 cut(s) 139
BseBI CCWGG 2 cut(s) 200, 233
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 312
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 2 cut(s) 47, 211
BseXI GCAGC 2 cut(s) 134, 399
BshFI GGCC 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 261
BsnI GGCC 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 1 cut(s) 104
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 139
BsrI ACTGG 2 cut(s) 47, 211
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 1 cut(s) 104
Bst2UI CCWGG 2 cut(s) 200, 233
Bst6I CTCTTC 1 cut(s) 305
BstBAI YACGTR 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 6, 167
BstDEI CTNAG 1 cut(s) 258
BstF5I GGATG 1 cut(s) 312
BstKTI GATC 1 cut(s) 107
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 1 cut(s) 104
BstMWI GCNNNNNNNGC 2 cut(s) 195, 299
BstNI CCWGG 2 cut(s) 200, 233
BstSCI CCNGG 2 cut(s) 198, 231
BstSFI CTRYAG 1 cut(s) 421
BstV1I GCAGC 2 cut(s) 134, 399
BstX2I RGATCY 1 cut(s) 104
BstXI CCANNNNNNTGG 1 cut(s) 206
BstYI RGATCY 1 cut(s) 104
BsuI GTATCC 1 cut(s) 39
BsuRI GGCC 1 cut(s) 147
BtsCI GGATG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 2 cut(s) 6, 167
Csp6I GTAC 1 cut(s) 204
CviAII CATG 2 cut(s) 14, 303
CviJI RGCY 5 cut(s) 8, 83, 125, 147, 158
CviKI_1 RGCY 5 cut(s) 8, 83, 125, 147, 158
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 1 cut(s) 258
DpnI GATC 1 cut(s) 106
DpnII GATC 1 cut(s) 104
EaeI YGGCCR 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 305
EcoRII CCWGG 2 cut(s) 198, 231
FaeI CATG 2 cut(s) 17, 306
FaiI YATR 5 cut(s) 15, 24, 38, 273, 304
FatI CATG 2 cut(s) 13, 302
Fnu4HI GCNGC 2 cut(s) 123, 413
FokI GGATG 1 cut(s) 319
Fsp4HI GCNGC 2 cut(s) 123, 413
FspBI CTAG 1 cut(s) 108
GluI GCNGC 2 cut(s) 123, 413
GsuI CTGGAG 1 cut(s) 254
HaeIII GGCC 1 cut(s) 147
Hin1II CATG 2 cut(s) 17, 306
HindIII AAGCTT 1 cut(s) 156
HinfI GANTC 2 cut(s) 313, 375
HphI GGTGA 3 cut(s) 295, 340, 406
Hpy188I TCNGA 2 cut(s) 261, 388
Hpy188III TCNNGA 1 cut(s) 317
HpyAV CCTTC 2 cut(s) 365, 366
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 7 cut(s) 4, 71, 122, 132, 212, 293, 415
HpyF10VI GCNNNNNNNGC 2 cut(s) 195, 299
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 2 cut(s) 17, 306
Kzo9I GATC 1 cut(s) 104
Lsp1109I GCAGC 2 cut(s) 134, 399
LweI GCATC 1 cut(s) 280
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 295
MalI GATC 1 cut(s) 106
MboI GATC 1 cut(s) 104
MboII GAAGA 4 cut(s) 111, 114, 322, 380
MflI RGATCY 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 167
MlsI TGGCCA 1 cut(s) 147
MluCI AATT 2 cut(s) 85, 331
MluNI TGGCCA 1 cut(s) 147
MlyI GAGTC 1 cut(s) 322
MnlI CCTC 3 cut(s) 52, 105, 261
Mox20I TGGCCA 1 cut(s) 147
MscI TGGCCA 1 cut(s) 147
MseI TTAA 2 cut(s) 404, 433
Msp20I TGGCCA 1 cut(s) 147
MspR9I CCNGG 2 cut(s) 200, 233
MvaI CCWGG 2 cut(s) 200, 233
MwoI GCNNNNNNNGC 2 cut(s) 195, 299
NdeII GATC 1 cut(s) 104
NlaIII CATG 2 cut(s) 17, 306
PfeI GAWTC 1 cut(s) 375
PkrI GCNGC 2 cut(s) 124, 414
PleI GAGTC 1 cut(s) 321
PpsI GAGTC 1 cut(s) 321
Ppu21I YACGTR 1 cut(s) 296
Psp6I CCWGG 2 cut(s) 198, 231
PspGI CCWGG 2 cut(s) 198, 231
PsuI RGATCY 1 cut(s) 104
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SaqAI TTAA 2 cut(s) 404, 433
SatI GCNGC 2 cut(s) 123, 413
Sau3AI GATC 1 cut(s) 104
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 2 cut(s) 200, 233
SduI GDGCHC 1 cut(s) 167
SetI ASST 8 cut(s) 63, 85, 160, 234, 285, 298, 346, 396
SfaNI GCATC 1 cut(s) 280
SfcI CTRYAG 1 cut(s) 421
Sse9I AATT 2 cut(s) 85, 331
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 198, 231
TaiI ACGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 338
TasI AATT 2 cut(s) 85, 331
TfiI GAWTC 1 cut(s) 375
Tru1I TTAA 2 cut(s) 404, 433
Tru9I TTAA 2 cut(s) 404, 433
TscAI CASTG 1 cut(s) 47
TseI GCWGC 2 cut(s) 122, 412
TspDTI ATGAA 4 cut(s) 11, 167, 323, 338
TspRI CASTG 1 cut(s) 47
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.