Prupe.3G149000_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Reverse (-)
16268018 .. 16268761
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G149000.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 354 bp
ATGAAAATCCAATCCAACATCAACGCCGACACTGATTCCTTCTGGACTTGGAAGCCAAGCCCTTTCAACGAGAAGCAGCAGAACGAAAATCGATTCTCCATCGCTGAAATTTTCCAGAGCAGCCAAAAAGCAGAGAGAAAGGTGTTGCTGGGGCCTGGAGCTGGAGCTGGAATTGGGTGCGGTGCTGGAGTAGGGTTTGGACTAGTTGGAGGGCTAGGATATGGTGCTTGGCCATTCAACCAAGTAAAGCTGGTGTTTGGGGTTGGGCTGGGTTGTGGGATCGGGGTCGGATTCGGGTTTGGACAAGGAGTTGGGTATGGAGTTAGCTCCGACTCTCTAGAGTCTTATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.22

Weight (kDa)

6.14

Isoelectric Point (pI)

26.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 180
AclWI GGATC 1 cut(s) 287
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 1 cut(s) 108
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 2 cut(s) 67, 238
AhlI ACTAGT 1 cut(s) 202
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 4 cut(s) 161, 167, 250, 327
AluI AGCT 4 cut(s) 161, 167, 250, 327
AlwI GGATC 1 cut(s) 287
AoxI GGCC 2 cut(s) 152, 230
ApeKI GCWGC 2 cut(s) 76, 120
ApoI RAATTY 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 152
BalI TGGCCA 1 cut(s) 232
BbvI GCAGC 2 cut(s) 88, 132
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 156
BcuI ACTAGT 1 cut(s) 202
BfaI CTAG 3 cut(s) 203, 215, 338
BisI GCNGC 2 cut(s) 77, 121
BlsI GCNGC 2 cut(s) 78, 122
Bme1390I CCNGG 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 156
BpmI CTGGAG 3 cut(s) 177, 183, 207
Bsa29I ATCGAT 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 161
BseBI CCWGG 1 cut(s) 156
BseCI ATCGAT 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 161
BseXI GCAGC 2 cut(s) 88, 132
BseYI CCCAGC 2 cut(s) 148, 268
BshFI GGCC 2 cut(s) 154, 232
BshVI ATCGAT 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 161
BsnI GGCC 2 cut(s) 154, 232
Bsp143I GATC 1 cut(s) 279
BspACI CCGC 1 cut(s) 180
BspANI GGCC 2 cut(s) 154, 232
BspDI ATCGAT 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 153
BspPI GGATC 1 cut(s) 287
BssMI GATC 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 156
BstKTI GATC 1 cut(s) 282
BstMBI GATC 1 cut(s) 279
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 154
BstV1I GCAGC 2 cut(s) 88, 132
Bsu15I ATCGAT 1 cut(s) 91
BsuRI GGCC 2 cut(s) 154, 232
BsuTUI ATCGAT 1 cut(s) 91
BtgZI GCGATG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 152
ClaI ATCGAT 1 cut(s) 91
DpnI GATC 1 cut(s) 281
DpnII GATC 1 cut(s) 279
EaeI YGGCCR 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 154
FaiI YATR 2 cut(s) 222, 318
Fnu4HI GCNGC 2 cut(s) 77, 121
Fsp4HI GCNGC 2 cut(s) 77, 121
FspBI CTAG 3 cut(s) 203, 215, 338
GluI GCNGC 2 cut(s) 77, 121
GsaI CCCAGC 2 cut(s) 152, 272
GsuI CTGGAG 3 cut(s) 177, 183, 207
HaeIII GGCC 2 cut(s) 154, 232
HinfI GANTC 5 cut(s) 35, 93, 291, 332, 341
Hpy188I TCNGA 2 cut(s) 290, 331
Hpy188III TCNNGA 3 cut(s) 43, 115, 338
HpyAV CCTTC 1 cut(s) 49
Kzo9I GATC 1 cut(s) 279
LmnI GCTCC 3 cut(s) 158, 164, 332
Lsp1109I GCAGC 2 cut(s) 88, 132
MaeI CTAG 3 cut(s) 203, 215, 338
MalI GATC 1 cut(s) 281
MboI GATC 1 cut(s) 279
MlsI TGGCCA 1 cut(s) 232
MluCI AATT 2 cut(s) 108, 171
MluNI TGGCCA 1 cut(s) 232
MlyI GAGTC 2 cut(s) 326, 350
MmeI TCCRAC 4 cut(s) 39, 187, 268, 354
MnlI CCTC 1 cut(s) 203
Mox20I TGGCCA 1 cut(s) 232
MscI TGGCCA 1 cut(s) 232
Msp20I TGGCCA 1 cut(s) 232
MspR9I CCNGG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 156
NdeII GATC 1 cut(s) 279
NlaIV GGNNCC 1 cut(s) 153
PfeI GAWTC 3 cut(s) 35, 93, 291
PkrI GCNGC 2 cut(s) 78, 122
PleI GAGTC 2 cut(s) 326, 349
PpsI GAGTC 2 cut(s) 326, 349
Psp6I CCWGG 1 cut(s) 154
PspFI CCCAGC 2 cut(s) 148, 268
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 152
SatI GCNGC 2 cut(s) 77, 121
Sau3AI GATC 1 cut(s) 279
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 2 cut(s) 326, 350
ScrFI CCNGG 1 cut(s) 156
SetI ASST 5 cut(s) 144, 163, 169, 252, 329
SpeI ACTAGT 1 cut(s) 202
Sse9I AATT 2 cut(s) 108, 171
SsiI CCGC 1 cut(s) 180
SspMI CTAG 3 cut(s) 203, 215, 338
StyD4I CCNGG 1 cut(s) 154
TaqI TCGA 1 cut(s) 91
TasI AATT 2 cut(s) 108, 171
TfiI GAWTC 3 cut(s) 35, 93, 291
TscAI CASTG 1 cut(s) 37
TseI GCWGC 2 cut(s) 76, 120
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 37
XapI RAATTY 1 cut(s) 108
XbaI TCTAGA 1 cut(s) 337
XspI CTAG 3 cut(s) 203, 215, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.