Prupe.3G149800_v2.0.a1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0021245
Physical Location & Seq
Reverse (-)
16356253 .. 16359565
3313 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G149800.4_v2.0.a1.CDS.2

Sequence Viewer

Length: 1206 bp
ATGGGGCAGTGCCCTTGTAGAAGAACTAAAGAAGGTGATGAAGATGGCGGCTCCGATGGTGGTGGTGACTTTGTCTCAGTATCTGTTGCAGGTTATTTCGATGATGATGGTTGGACATCTTGGGGAACTCTCTCTTTCTGGTGTTGCTATTGCCACCTCTTTCTCCATCGTCACTGGCTTCAGTCTCCTTGCCAAGACCCTTTAATCGCACAAGAAGCTGGCAGATATGCAATTTGGCTCATCCCTTCACTATTTGCCTACGCCGTTCTTCAATCGTTGGTTCGATTCTTCCTAGCTCAGGGCCTGATTTTCCCAATGCCCTTAAGTTCATCCTTGGTTCTGCTTCTGCACATACCTCTATGTTGGGCTCTAGTCTTTCATTTGGGATTAGGAAATATTGGCGCGGCTTTGTCCACAGGTTTATGCAATTGGTTGAATACAATCATCCTTTTGACTTACTTGAAGTATTCTTCAACATGTGAGAAAACTCGTGTCCACTTCTCAACTGATGTTTTCTTAAGCATTAAGAAGTTTTTTGTCTTGGCCATCCCCTCTGCTGTAATGGTTTGTCTTGAATGGTGGTCATTTGAGCTGCTTATTTTACTCTCTGGGCTTCTACCAAACTCGAAACTTGAAACTTCAGTGCTTTCTATTTGCCTCACAACAACTTCATTGCACTACTTTATACCATATAGTGTTGGCGCTGCTGCAAGCAACCGAATTTCAAATGAATTAGGAGCCGATAATCCACGTGTAGCTCGAGTAGTTGTTTGGGCTGCAATGGTTCTTGCAGTTACTGAAGCTGTCATCGTGAGCACAATTCTCCTCTGCTGCCGTTCTGTGTGGGGTTATGTTTATAGTAATGACATGGAAGTTGTCAATTATGTCAAACGACTTGCTCCACTGCTTTCCCTCTCACTTTTCGCAGACAGCTTACAAGCTGTACTTTCAGGGGTTGCTAGAGGATGTGGGATGCAGCGTATAGGGGCTTATATAAATCTTTGTGCATATTATATAGCTGGAATTCCGGTTGCCGTCGTATTGGGTTTTCTTCTACATCTGAGGGGAATGGGGCTTTGGATCGGAATGATGACAGGCTCTTCTGTACCGGCATTGTTGTTCATTCTCATAACGTCCTTCATAAATTGGCCAAAACAGGCAACCATGGCAAGGGAGAGGATATTTAGATTTCAACAAGCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

402

Amino Acids

44.28

Weight (kDa)

7.88

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 80
AccII CGCG 1 cut(s) 404
AciI CCGC 2 cut(s) 48, 404
AclWI GGATC 1 cut(s) 1088
AcoI YGGCCR 2 cut(s) 543, 1148
AcsI RAATTY 2 cut(s) 720, 1023
AcuI CTGAAG 3 cut(s) 164, 624, 819
AcvI CACGTG 1 cut(s) 752
AfaI GTAC 2 cut(s) 945, 1107
AfiI CCNNNNNNNGG 2 cut(s) 298, 1170
AflII CTTAAG 2 cut(s) 322, 517
AflIII ACRYGT 2 cut(s) 476, 751
AgsI TTSAA 8 cut(s) 272, 436, 463, 474, 575, 635, 726, 1193
AjuI GAANNNNNNNTTGG 2 cut(s) 1060, 1092
AluBI AGCT 8 cut(s) 218, 296, 592, 758, 803, 933, 941, 1019
AluI AGCT 8 cut(s) 218, 296, 592, 758, 803, 933, 941, 1019
Alw21I GWGCWC 1 cut(s) 818
Alw26I GTCTC 2 cut(s) 79, 189
AlwI GGATC 1 cut(s) 1088
AlwNI CAGNNNCTG 3 cut(s) 83, 304, 797
Ama87I CYCGRG 1 cut(s) 759
AoxI GGCC 3 cut(s) 301, 543, 1148
ApeKI GCWGC 6 cut(s) 592, 704, 707, 776, 831, 976
ApoI RAATTY 2 cut(s) 720, 1023
AspLEI GCGC 2 cut(s) 404, 704
AspS9I GGNCC 1 cut(s) 301
AsuHPI GGTGA 2 cut(s) 47, 77
AvaI CYCGRG 1 cut(s) 759
BaeGI GKGCMC 1 cut(s) 14
BalI TGGCCA 2 cut(s) 545, 1150
BanII GRGCYC 1 cut(s) 370
BauI CACGAG 1 cut(s) 489
BbrPI CACGTG 1 cut(s) 752
Bbv12I GWGCWC 1 cut(s) 818
BbvI GCAGC 6 cut(s) 579, 691, 694, 763, 818, 988
BccI CCATC 5 cut(s) 38, 50, 101, 174, 554
BceAI ACGGC 3 cut(s) 248, 819, 1019
BcoDI GTCTC 2 cut(s) 79, 189
BfaI CTAG 3 cut(s) 293, 371, 960
BfoI RGCGCY 1 cut(s) 705
BfrI CTTAAG 2 cut(s) 322, 517
BfuAI ACCTGC 1 cut(s) 80
BisI GCNGC 8 cut(s) 49, 405, 593, 705, 708, 777, 832, 977
BlsI GCNGC 8 cut(s) 50, 406, 594, 706, 709, 778, 833, 978
BmeT110I CYCGRG 1 cut(s) 759
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 2 cut(s) 52, 739
BmsI GCATC 1 cut(s) 963
Bpu10I CCTNAGC 1 cut(s) 297
BsaAI YACGTR 1 cut(s) 752
BsaJI CCNNGG 2 cut(s) 333, 1164
BsaWI WCCGGW 1 cut(s) 1027
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 1170
Bse118I RCCGGY 1 cut(s) 1108
Bse1I ACTGG 1 cut(s) 179
Bse3DI GCAATG 2 cut(s) 671, 786
BseDI CCNNGG 2 cut(s) 333, 1164
BseGI GGATG 6 cut(s) 240, 329, 444, 546, 971, 978
BseLI CCNNNNNNNGG 2 cut(s) 298, 1170
BseMI GCAATG 2 cut(s) 671, 786
BseMII CTCAG 3 cut(s) 90, 311, 1052
BseNI ACTGG 1 cut(s) 179
BseRI GAGGAG 1 cut(s) 815
BseSI GKGCMC 1 cut(s) 14
BseXI GCAGC 6 cut(s) 579, 691, 694, 763, 818, 988
BsgI GTGCAG 1 cut(s) 332
Bsh1236I CGCG 1 cut(s) 404
BshFI GGCC 3 cut(s) 303, 545, 1150
BsiHKAI GWGCWC 1 cut(s) 818
BsiHKCI CYCGRG 1 cut(s) 759
BsiSI CCGG 2 cut(s) 1028, 1109
BslI CCNNNNNNNGG 2 cut(s) 298, 1170
BsmAI GTCTC 2 cut(s) 79, 189
BsnI GGCC 3 cut(s) 303, 545, 1150
BsoBI CYCGRG 1 cut(s) 759
Bsp1286I GDGCHC 3 cut(s) 14, 370, 818
Bsp143I GATC 1 cut(s) 1080
Bsp19I CCATGG 1 cut(s) 1164
BspACI CCGC 2 cut(s) 48, 404
BspANI GGCC 3 cut(s) 303, 545, 1150
BspCNI CTCAG 3 cut(s) 89, 310, 1053
BspFNI CGCG 1 cut(s) 404
BspLI GGNNCC 2 cut(s) 52, 739
BspMI ACCTGC 1 cut(s) 80
BspPI GGATC 1 cut(s) 1088
BspQI GCTCTTC 1 cut(s) 1105
BspTI CTTAAG 2 cut(s) 322, 517
BsrDI GCAATG 2 cut(s) 671, 786
BsrFI RCCGGY 1 cut(s) 1108
BsrI ACTGG 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 1108
BssECI CCNNGG 2 cut(s) 333, 1164
BssMI GATC 1 cut(s) 1080
BssSI CACGAG 1 cut(s) 489
BssT1I CCWWGG 2 cut(s) 333, 1164
Bst2BI CACGAG 1 cut(s) 489
Bst6I CTCTTC 1 cut(s) 1105
BstAFI CTTAAG 2 cut(s) 322, 517
BstBAI YACGTR 1 cut(s) 752
BstC8I GCNNGC 2 cut(s) 220, 712
BstDEI CTNAG 3 cut(s) 76, 297, 1061
BstDSI CCRYGG 1 cut(s) 1164
BstENI CCTNNNNNAGG 1 cut(s) 296
BstF5I GGATG 6 cut(s) 240, 329, 444, 546, 971, 978
BstFNI CGCG 1 cut(s) 404
BstH2I RGCGCY 1 cut(s) 705
BstHHI GCGC 2 cut(s) 404, 704
BstKTI GATC 1 cut(s) 1083
BstMAI GTCTC 2 cut(s) 79, 189
BstMBI GATC 1 cut(s) 1080
BstMWI GCNNNNNNNGC 2 cut(s) 215, 1166
BstNSI RCATGY 1 cut(s) 480
BstSLI GKGCMC 1 cut(s) 14
BstUI CGCG 1 cut(s) 404
BstV1I GCAGC 6 cut(s) 579, 691, 694, 763, 818, 988
BsuRI GGCC 3 cut(s) 303, 545, 1150
BtgI CCRYGG 1 cut(s) 1164
BtsCI GGATG 6 cut(s) 240, 329, 444, 546, 971, 978
BtsI GCAGTG 2 cut(s) 14, 902
BtsIMutI CAGTG 4 cut(s) 14, 172, 648, 902
BveI ACCTGC 1 cut(s) 80
Cac8I GCNNGC 2 cut(s) 220, 712
CaiI CAGNNNCTG 3 cut(s) 83, 304, 797
CfoI GCGC 2 cut(s) 404, 704
Cfr10I RCCGGY 1 cut(s) 1108
Cfr13I GGNCC 1 cut(s) 301
Csp6I GTAC 2 cut(s) 944, 1106
CviAII CATG 3 cut(s) 477, 868, 1165
CviQI GTAC 2 cut(s) 944, 1106
DdeI CTNAG 3 cut(s) 76, 297, 1061
DpnI GATC 1 cut(s) 1082
DpnII GATC 1 cut(s) 1080
EaeI YGGCCR 2 cut(s) 543, 1148
Eam1104I CTCTTC 1 cut(s) 1105
EarI CTCTTC 1 cut(s) 1105
Eco130I CCWWGG 2 cut(s) 333, 1164
Eco24I GRGCYC 1 cut(s) 370
Eco57I CTGAAG 3 cut(s) 164, 624, 819
Eco72I CACGTG 1 cut(s) 752
Eco88I CYCGRG 1 cut(s) 759
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 301
EcoRI GAATTC 1 cut(s) 1023
EcoT14I CCWWGG 2 cut(s) 333, 1164
EcoT38I GRGCYC 1 cut(s) 370
ErhI CCWWGG 2 cut(s) 333, 1164
FaeI CATG 3 cut(s) 480, 871, 1168
FalI AAGNNNNNCTT 2 cut(s) 930, 962
FatI CATG 3 cut(s) 476, 867, 1164
Fnu4HI GCNGC 8 cut(s) 49, 405, 593, 705, 708, 777, 832, 977
FokI GGATG 6 cut(s) 227, 316, 431, 533, 978, 985
FriOI GRGCYC 1 cut(s) 370
Fsp4HI GCNGC 8 cut(s) 49, 405, 593, 705, 708, 777, 832, 977
FspBI CTAG 3 cut(s) 293, 371, 960
GlaI GCGC 2 cut(s) 403, 703
GluI GCNGC 8 cut(s) 49, 405, 593, 705, 708, 777, 832, 977
HaeII RGCGCY 1 cut(s) 705
HaeIII GGCC 3 cut(s) 303, 545, 1150
HapII CCGG 2 cut(s) 1028, 1109
HhaI GCGC 2 cut(s) 404, 704
Hin1II CATG 3 cut(s) 480, 871, 1168
Hin6I GCGC 2 cut(s) 402, 702
HinP1I GCGC 2 cut(s) 402, 702
HinfI GANTC 1 cut(s) 285
HpaII CCGG 2 cut(s) 1028, 1109
HphI GGTGA 2 cut(s) 47, 77
Hpy166II GTNNAC 2 cut(s) 414, 496
Hpy188I TCNGA 3 cut(s) 55, 1062, 1085
Hpy188III TCNNGA 2 cut(s) 572, 811
Hpy8I GTNNAC 2 cut(s) 414, 496
Hpy99I CGWCG 1 cut(s) 1040
HpyAV CCTTC 3 cut(s) 26, 255, 1147
HpyCH4IV ACGT 2 cut(s) 751, 1133
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 1166
HpyF3I CTNAG 3 cut(s) 76, 297, 1061
HpySE526I ACGT 2 cut(s) 751, 1133
Hsp92II CATG 3 cut(s) 480, 871, 1168
HspAI GCGC 2 cut(s) 402, 702
Kzo9I GATC 1 cut(s) 1080
LguI GCTCTTC 1 cut(s) 1105
LmnI GCTCC 3 cut(s) 56, 737, 904
Lsp1109I GCAGC 6 cut(s) 579, 691, 694, 763, 818, 988
LweI GCATC 1 cut(s) 963
MaeI CTAG 3 cut(s) 293, 371, 960
MaeII ACGT 2 cut(s) 751, 1133
MaeIII GTNAC 3 cut(s) 65, 170, 793
MalI GATC 1 cut(s) 1082
MboI GATC 1 cut(s) 1080
MboII GAAGA 7 cut(s) 33, 53, 260, 280, 462, 1043, 1092
MfeI CAATTG 1 cut(s) 427
MhlI GDGCHC 3 cut(s) 14, 370, 818
MlsI TGGCCA 2 cut(s) 545, 1150
MluCI AATT 9 cut(s) 231, 427, 720, 731, 819, 880, 1023, 1144, 1201
MluNI TGGCCA 2 cut(s) 545, 1150
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 9 cut(s) 167, 366, 562, 668, 836, 923, 956, 1056, 1170
Mox20I TGGCCA 2 cut(s) 545, 1150
MscI TGGCCA 2 cut(s) 545, 1150
MseI TTAA 4 cut(s) 203, 323, 518, 525
Msp20I TGGCCA 2 cut(s) 545, 1150
MspCI CTTAAG 2 cut(s) 322, 517
MspI CCGG 2 cut(s) 1028, 1109
MunI CAATTG 1 cut(s) 427
MvnI CGCG 1 cut(s) 404
MwoI GCNNNNNNNGC 2 cut(s) 215, 1166
NcoI CCATGG 1 cut(s) 1164
NdeII GATC 1 cut(s) 1080
NlaIII CATG 3 cut(s) 480, 871, 1168
NlaIV GGNNCC 2 cut(s) 52, 739
NmuCI GTSAC 2 cut(s) 65, 170
NspI RCATGY 1 cut(s) 480
PaeR7I CTCGAG 1 cut(s) 759
PciI ACATGT 1 cut(s) 476
PciSI GCTCTTC 1 cut(s) 1105
PcsI WCGNNNNNNNCGW 1 cut(s) 757
PfeI GAWTC 1 cut(s) 285
PflFI GACNNNGTC 1 cut(s) 71
PkrI GCNGC 8 cut(s) 50, 406, 594, 706, 709, 778, 833, 978
PmaCI CACGTG 1 cut(s) 752
PmlI CACGTG 1 cut(s) 752
Ppu21I YACGTR 1 cut(s) 752
PscI ACATGT 1 cut(s) 476
PspCI CACGTG 1 cut(s) 752
PspN4I GGNNCC 2 cut(s) 52, 739
PspPI GGNCC 1 cut(s) 301
PspXI VCTCGAGB 1 cut(s) 759
PstNI CAGNNNCTG 3 cut(s) 83, 304, 797
PsyI GACNNNGTC 1 cut(s) 71
RsaI GTAC 2 cut(s) 945, 1107
RsaNI GTAC 2 cut(s) 944, 1106
SapI GCTCTTC 1 cut(s) 1105
SaqAI TTAA 4 cut(s) 203, 323, 518, 525
SatI GCNGC 8 cut(s) 49, 405, 593, 705, 708, 777, 832, 977
Sau3AI GATC 1 cut(s) 1080
Sau96I GGNCC 1 cut(s) 301
SduI GDGCHC 3 cut(s) 14, 370, 818
SfaNI GCATC 1 cut(s) 963
Sfr274I CTCGAG 1 cut(s) 759
SlaI CTCGAG 1 cut(s) 759
SmlI CTYRAG 3 cut(s) 322, 517, 759
SmoI CTYRAG 3 cut(s) 322, 517, 759
Sse9I AATT 9 cut(s) 231, 427, 720, 731, 819, 880, 1023, 1144, 1201
SsiI CCGC 2 cut(s) 48, 404
SspI AATATT 1 cut(s) 397
SspMI CTAG 3 cut(s) 293, 371, 960
StyI CCWWGG 2 cut(s) 333, 1164
TaiI ACGT 2 cut(s) 754, 1136
TaqI TCGA 4 cut(s) 99, 283, 626, 760
TasI AATT 9 cut(s) 231, 427, 720, 731, 819, 880, 1023, 1144, 1201
TatI WGTACW 1 cut(s) 943
TauI GCSGC 2 cut(s) 51, 407
TfiI GAWTC 1 cut(s) 285
Tru1I TTAA 4 cut(s) 203, 323, 518, 525
Tru9I TTAA 4 cut(s) 203, 323, 518, 525
TscAI CASTG 4 cut(s) 14, 179, 648, 909
TseFI GTSAC 2 cut(s) 65, 170
TseI GCWGC 6 cut(s) 592, 704, 707, 776, 831, 976
Tsp45I GTSAC 2 cut(s) 65, 170
TspDTI ATGAA 7 cut(s) 54, 318, 368, 660, 744, 1111, 1129
TspRI CASTG 4 cut(s) 14, 179, 648, 909
Tth111I GACNNNGTC 1 cut(s) 71
Vha464I CTTAAG 2 cut(s) 322, 517
XagI CCTNNNNNAGG 1 cut(s) 296
XapI RAATTY 2 cut(s) 720, 1023
XceI RCATGY 1 cut(s) 480
XhoI CTCGAG 1 cut(s) 759
XspI CTAG 3 cut(s) 293, 371, 960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.