Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

17833055 .. 17835295

Gene Structure 2241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G159500.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCATTGGAGACACAAGAATCTGATGGAATTGAAGAAGAAATTTCAAAGATAGAAAAAGGTCTTGTAAGCACCTCTCATAACCCAGGAACCAATACAAGCGATGATTTTCGTTCATCAGCTGCACCCCCAAGCCTCCCTCAAAAGTTGATTGCAGAGTTGATTGGTACATACTTTGTGATATTTGCTGGGTGTGGTTCGGTGGCTGTGAACAAAATATATGGGAACGTCACGTTTCCTGGCGTATGTGTAACATGGGGTCTCATTGTCATGGCCATGATATATTCAGTCGGCCATATTTCTGGGGCACACTTCAATCCGGCCGTCACCATCACCTTCGGCGTCCTTCGCCGGTTATCTTTCCGGGAGGTCCCATCATATATAGTAGCTCAACTATTGGGATCAACTATGGCTAGCGGCACAATTGCTGTACTTCTTGATATAACCCCAAAAGCTTACTTTGGAACTGTTCCAGTTGGATCTAACGGCCAGTCCTTGGTCTTTGAAATTATCATCTCCTTCCTCTTGATGTTTGTCATCTCTGGAGCTTCCACAGATAGTAGAGCGATTGGTGATCTAGCTGGGGTTGCCGTTGGAATGACAATACTATTAAATGTCTTCATTGCTGGGCCAGTTTCAGGGGCTTCGATGAACCCGGCGAGGAGCTTAGGGCCAGCGATTGTGAAGCATGTGTACAAAGGGTTATGGGTGTATATAGTGGGACCAATAACTGGATGCCTTGCAGGAGGAATTGCATATAATTTCATCAGGTCCAAACCACTCGCCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

264

Amino Acids

27.51

Weight (kDa)

6.89

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	496, 731
AciI	CCGC	1 cut(s)	417
AclWI	GGATC	2 cut(s)	409, 487
AcoI	YGGCCR	4 cut(s)	273, 292, 321, 487
AcsI	RAATTY	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	342
AfaI	GTAC	3 cut(s)	169, 432, 695
AfiI	CCNNNNNNNGG	3 cut(s)	496, 638, 731
AgsI	TTSAA	4 cut(s)	35, 48, 316, 506
AjnI	CCWGG	2 cut(s)	85, 238
AluBI	AGCT	6 cut(s)	122, 389, 455, 548, 581, 666
AluI	AGCT	6 cut(s)	122, 389, 455, 548, 581, 666
Alw26I	GTCTC	2 cut(s)	5, 266
AlwI	GGATC	2 cut(s)	409, 487
AoxI	GGCC	6 cut(s)	273, 292, 321, 487, 629, 671
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	1 cut(s)	42
AspS9I	GGNCC	5 cut(s)	370, 629, 671, 722, 771
AsuC2I	CCSGG	2 cut(s)	365, 656
AsuHPI	GGTGA	3 cut(s)	319, 325, 584
AsuNHI	GCTAGC	1 cut(s)	413
AvaII	GGWCC	3 cut(s)	370, 722, 771
BaeGI	GKGCMC	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	275
BarI	GAAGNNNNNNTAC	2 cut(s)	677, 709
BbsI	GAAGAC	1 cut(s)	610
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	3 cut(s)	20, 338, 382
BceAI	ACGGC	3 cut(s)	308, 502, 575
BciT130I	CCWGG	2 cut(s)	87, 240
BcnI	CCSGG	2 cut(s)	365, 656
BcoDI	GTCTC	2 cut(s)	5, 266
BfaI	CTAG	2 cut(s)	414, 578
BisI	GCNGC	2 cut(s)	123, 418
BlsI	GCNGC	2 cut(s)	124, 419
Bme1390I	CCNGG	4 cut(s)	87, 240, 365, 656
Bme18I	GGWCC	3 cut(s)	370, 722, 771
BmgT120I	GGNCC	5 cut(s)	370, 629, 671, 722, 771
BmiI	GGNNCC	3 cut(s)	91, 372, 723
BmrFI	CCNGG	4 cut(s)	87, 240, 365, 656
BmsI	GCATC	1 cut(s)	725
BmtI	GCTAGC	1 cut(s)	417
BpiI	GAAGAC	1 cut(s)	610
BpmI	CTGGAG	1 cut(s)	564
Bpu10I	CCTNAGC	1 cut(s)	667
BpuMI	CCSGG	2 cut(s)	365, 656
BsaHI	GRCGYC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	85, 495
Bsc4I	CCNNNNNNNGG	3 cut(s)	496, 638, 731
Bse118I	RCCGGY	1 cut(s)	351
Bse1I	ACTGG	5 cut(s)	473, 490, 632, 736, 786
Bse3DI	GCAATG	1 cut(s)	621
BseBI	CCWGG	2 cut(s)	87, 240
BseDI	CCNNGG	2 cut(s)	85, 495
BseGI	GGATG	1 cut(s)	740
BseLI	CCNNNNNNNGG	3 cut(s)	496, 638, 731
BseMI	GCAATG	1 cut(s)	621
BseNI	ACTGG	5 cut(s)	473, 490, 632, 736, 786
BseRI	GAGGAG	1 cut(s)	676
BseSI	GKGCMC	1 cut(s)	310
BseX3I	CGGCCG	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	109
BseYI	CCCAGC	3 cut(s)	188, 581, 626
BsgI	GTGCAG	1 cut(s)	108
Bsh1285I	CGRYCG	1 cut(s)	324
BshFI	GGCC	6 cut(s)	275, 294, 323, 489, 631, 673
BsiEI	CGRYCG	1 cut(s)	324
BsiSI	CCGG	4 cut(s)	320, 352, 364, 656
BslFI	GGGAC	2 cut(s)	356, 735
BslI	CCNNNNNNNGG	3 cut(s)	496, 638, 731
BsmAI	GTCTC	2 cut(s)	5, 266
BsmFI	GGGAC	2 cut(s)	356, 735
BsnI	GGCC	6 cut(s)	275, 294, 323, 489, 631, 673
Bso31I	GGTCTC	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp1407I	TGTACA	1 cut(s)	693
Bsp143I	GATC	3 cut(s)	401, 479, 574
BspACI	CCGC	1 cut(s)	417
BspANI	GGCC	6 cut(s)	275, 294, 323, 489, 631, 673
BspLI	GGNNCC	3 cut(s)	91, 372, 723
BspOI	GCTAGC	1 cut(s)	417
BspPI	GGATC	2 cut(s)	409, 487
BspTNI	GGTCTC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	621
BsrFI	RCCGGY	1 cut(s)	351
BsrGI	TGTACA	1 cut(s)	693
BsrI	ACTGG	5 cut(s)	473, 490, 632, 736, 786
BssAI	RCCGGY	1 cut(s)	351
BssECI	CCNNGG	2 cut(s)	85, 495
BssMI	GATC	3 cut(s)	401, 479, 574
BssNI	GRCGYC	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	495
Bst2UI	CCWGG	2 cut(s)	87, 240
Bst4CI	ACNGT	1 cut(s)	469
BstACI	GRCGYC	1 cut(s)	342
BstAUI	TGTACA	1 cut(s)	693
BstC8I	GCNNGC	2 cut(s)	415, 675
BstDEI	CTNAG	1 cut(s)	667
BstF5I	GGATG	1 cut(s)	740
BstKTI	GATC	3 cut(s)	404, 482, 577
BstMAI	GTCTC	2 cut(s)	5, 266
BstMBI	GATC	3 cut(s)	401, 479, 574
BstMCI	CGRYCG	1 cut(s)	324
BstMWI	GCNNNNNNNGC	2 cut(s)	348, 587
BstNI	CCWGG	2 cut(s)	87, 240
BstNSI	RCATGY	1 cut(s)	692
BstSCI	CCNGG	4 cut(s)	85, 238, 363, 654
BstSLI	GKGCMC	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	109
BstV2I	GAAGAC	1 cut(s)	610
BstX2I	RGATCY	1 cut(s)	479
BstXI	CCANNNNNNTGG	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	479
BstZI	CGGCCG	1 cut(s)	321
BsuRI	GGCC	6 cut(s)	275, 294, 323, 489, 631, 673
BtgZI	GCGATG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	740
Cac8I	GCNNGC	2 cut(s)	415, 675
Cfr10I	RCCGGY	1 cut(s)	351
Cfr13I	GGNCC	5 cut(s)	370, 629, 671, 722, 771
CseI	GACGC	1 cut(s)	331
Csp6I	GTAC	3 cut(s)	168, 431, 694
CviAII	CATG	4 cut(s)	255, 271, 277, 689
CviQI	GTAC	3 cut(s)	168, 431, 694
DdeI	CTNAG	1 cut(s)	667
DpnI	GATC	3 cut(s)	403, 481, 576
DpnII	GATC	3 cut(s)	401, 479, 574
EaeI	YGGCCR	4 cut(s)	273, 292, 321, 487
EagI	CGGCCG	1 cut(s)	321
EclXI	CGGCCG	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	495
Eco31I	GGTCTC	1 cut(s)	266
Eco47I	GGWCC	3 cut(s)	370, 722, 771
Eco52I	CGGCCG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	370
EcoRII	CCWGG	2 cut(s)	85, 238
EcoT14I	CCWWGG	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	4 cut(s)	258, 274, 280, 692
FaqI	GGGAC	2 cut(s)	356, 735
FatI	CATG	4 cut(s)	254, 270, 276, 688
Fnu4HI	GCNGC	2 cut(s)	123, 418
FokI	GGATG	1 cut(s)	747
Fsp4HI	GCNGC	2 cut(s)	123, 418
FspBI	CTAG	2 cut(s)	414, 578
GluI	GCNGC	2 cut(s)	123, 418
GsaI	CCCAGC	3 cut(s)	192, 585, 630
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	6 cut(s)	275, 294, 323, 489, 631, 673
HapII	CCGG	4 cut(s)	320, 352, 364, 656
HgaI	GACGC	1 cut(s)	331
Hin1I	GRCGYC	1 cut(s)	342
Hin1II	CATG	4 cut(s)	258, 274, 280, 692
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	4 cut(s)	320, 352, 364, 656
HphI	GGTGA	3 cut(s)	319, 325, 584
Hpy166II	GTNNAC	2 cut(s)	211, 694
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	3 cut(s)	437, 526, 543
Hpy8I	GTNNAC	2 cut(s)	211, 694
HpyAV	CCTTC	3 cut(s)	346, 356, 529
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	2 cut(s)	228, 233
HpyCH4V	TGCA	4 cut(s)	125, 155, 743, 755
HpyF10VI	GCNNNNNNNGC	2 cut(s)	348, 587
HpyF3I	CTNAG	1 cut(s)	667
HpySE526I	ACGT	2 cut(s)	228, 233
Hsp92I	GRCGYC	1 cut(s)	342
Hsp92II	CATG	4 cut(s)	258, 274, 280, 692
Kzo9I	GATC	3 cut(s)	401, 479, 574
LmnI	GCTCC	2 cut(s)	545, 663
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	1 cut(s)	725
MaeI	CTAG	2 cut(s)	414, 578
MaeII	ACGT	2 cut(s)	228, 233
MaeIII	GTNAC	3 cut(s)	229, 250, 325
MalI	GATC	3 cut(s)	403, 481, 576
MboI	GATC	3 cut(s)	401, 479, 574
MboII	GAAGA	3 cut(s)	47, 50, 610
MfeI	CAATTG	1 cut(s)	423
MflI	RGATCY	1 cut(s)	479
MhlI	GDGCHC	1 cut(s)	310
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	6 cut(s)	30, 42, 423, 507, 750, 760
MluNI	TGGCCA	1 cut(s)	275
MmeI	TCCRAC	2 cut(s)	457, 574
MnlI	CCTC	7 cut(s)	85, 146, 150, 361, 533, 654, 740
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	1 cut(s)	611
MslI	CAYNNNNRTG	2 cut(s)	269, 275
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	4 cut(s)	320, 352, 364, 656
MspR9I	CCNGG	4 cut(s)	87, 240, 365, 656
MunI	CAATTG	1 cut(s)	423
MvaI	CCWGG	2 cut(s)	87, 240
MwoI	GCNNNNNNNGC	2 cut(s)	348, 587
NciI	CCSGG	2 cut(s)	365, 656
NdeII	GATC	3 cut(s)	401, 479, 574
NheI	GCTAGC	1 cut(s)	413
NlaIII	CATG	4 cut(s)	258, 274, 280, 692
NlaIV	GGNNCC	3 cut(s)	91, 372, 723
NmuCI	GTSAC	2 cut(s)	229, 325
NspI	RCATGY	1 cut(s)	692
PfeI	GAWTC	1 cut(s)	20
PflMI	CCANNNNNTGG	2 cut(s)	496, 731
PfoI	TCCNGGA	1 cut(s)	363
PkrI	GCNGC	2 cut(s)	124, 419
PpuMI	RGGWCCY	1 cut(s)	370
Psp5II	RGGWCCY	1 cut(s)	370
Psp6I	CCWGG	2 cut(s)	85, 238
PspFI	CCCAGC	3 cut(s)	188, 581, 626
PspGI	CCWGG	2 cut(s)	85, 238
PspN4I	GGNNCC	3 cut(s)	91, 372, 723
PspPI	GGNCC	5 cut(s)	370, 629, 671, 722, 771
PspPPI	RGGWCCY	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	479
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	3 cut(s)	169, 432, 695
RsaNI	GTAC	3 cut(s)	168, 431, 694
RseI	CAYNNNNRTG	2 cut(s)	269, 275
SaqAI	TTAA	1 cut(s)	611
SatI	GCNGC	2 cut(s)	123, 418
Sau3AI	GATC	3 cut(s)	401, 479, 574
Sau96I	GGNCC	5 cut(s)	370, 629, 671, 722, 771
ScrFI	CCNGG	4 cut(s)	87, 240, 365, 656
SduI	GDGCHC	1 cut(s)	310
SfaNI	GCATC	1 cut(s)	725
SinI	GGWCC	3 cut(s)	370, 722, 771
SmiMI	CAYNNNNRTG	2 cut(s)	269, 275
Sse9I	AATT	6 cut(s)	30, 42, 423, 507, 750, 760
SsiI	CCGC	1 cut(s)	417
SspMI	CTAG	2 cut(s)	414, 578
StyD4I	CCNGG	4 cut(s)	85, 238, 363, 654
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	2 cut(s)	231, 236
TaqI	TCGA	1 cut(s)	647
TasI	AATT	6 cut(s)	30, 42, 423, 507, 750, 760
TatI	WGTACW	2 cut(s)	430, 693
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	611
Tru9I	TTAA	1 cut(s)	611
TseFI	GTSAC	2 cut(s)	229, 325
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	2 cut(s)	229, 325
TspDTI	ATGAA	4 cut(s)	105, 610, 665, 754
Van91I	CCANNNNNTGG	2 cut(s)	496, 731
VpaK11BI	GGWCC	3 cut(s)	370, 722, 771
XapI	RAATTY	1 cut(s)	42
XceI	RCATGY	1 cut(s)	692
XspI	CTAG	2 cut(s)	414, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.