Prupe.3G164000_v2.0.a1

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Forward (+)
18318613 .. 18322070
3458 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G164000.1_v2.0.a1.CDS.5

Sequence Viewer

Length: 1263 bp
ATGGAGAAAAACTTGACCAAAATCAAAAGTCGCATTCGTTCCTCAACCCAAGGGGTCTTGCTCAACCCATCGTTGATTGAGCCTAAACAAGTAGCACACAAGCCAAGCAACATTGTGGAGAAGATATTGAAAATGTGCCCAGAACTACTATGGCAGTCCAATGGAAGTGTGGTCAAAGAAGCCTGGCGGTGTCTAATCAGGACAACCAACGTGGGCAAGGACACAGCCTTGCACGAGGCAACACGCTTTAATCACCTAAATGTGGTGGAGATATTGACCAAAGAAGATACTAAATTTTCCTATTCTGCTAATGATAGTGGCGACACACCACTTTACTTGGCTGCTGAGAGGGGATACCATGATTTGGTTTTCAAAATGTTAGAGACTTGCAAATATCCAACTTATGGAGGCCGCAATGGTAAAACAGCTTTGCATGCTGCAATGCTAATAGAATCTGATAACTCAGCTACTTATGTTGGTGACAGAGTGTACAAAAAGACACCCCTTCATGTTGCAGCCATTCAAGGGCATGAACAAGTAATGAGAGAGATCATTTCTCATTGCCCTGATTGCTGCGAATTGGTTGATCACAAAGGTTGTAATGCCCTTCACTATGCCATTGAGTGGCCTAGAGGTCTAATAGAGGATCTTGTTTTGAAAGATCCATGGCTTAGCCATGTCCTTTTAAATGGAAAGGATGCTGACGCGAACATACCCCTCATTCATCTGCTTTCTGTGGCTGATAATTTCATCGGTGATACTAGAATTGATCAGATGACATTCAACAAGAAAATCCTAGACGATCTAGACAACATTCTAGCTAATAAGACTCTCTTACCAACACTGAAGAACACTGTTAACCGCATTTTGGAGTGGAATGGAGTAAGACCAGGAGGCCCATATTCAATTGTAAGCCATGAAGATAGTATCGGCAGAAACTCCAAATTATATGGAGACACTATTGAGGAAGTTAAGGAAGACAAATGTGGCATTTCAGAAATGAAAGGTGCCGCTGGATCAAGCCTTAATCATCATTCAATTTATTTTGGTAACGATGATAATAATAGGGAAATCAGTCCAGATAGAGACGGTAATGAATTTGGGGAAAATAAAGGTGGCAAAAACAATGATGCAGTAGAGGAAGGAAGACAAACCTATCTAGTAGGGGCTACATTGATAGAAATTGTAACCTTTGCAGCAGGTTTCACCATGCCTTATGGTTACCAAAGTGAAAAGGACCTAACCAGGGTTTTGCAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

421

Amino Acids

46.93

Weight (kDa)

5.94

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1190
AccB1I GGYRCC 1 cut(s) 1007
AccB7I CCANNNNNTGG 3 cut(s) 364, 404, 624
AccII CGCG 1 cut(s) 707
AciI CCGC 4 cut(s) 187, 412, 862, 1011
AclWI GGATC 3 cut(s) 654, 656, 1024
AcsI RAATTY 2 cut(s) 293, 1097
AcuI CTGAAG 1 cut(s) 866
AfaI GTAC 1 cut(s) 491
AfiI CCNNNNNNNGG 7 cut(s) 262, 364, 404, 525, 624, 868, 1246
AgsI TTSAA 7 cut(s) 130, 373, 524, 658, 784, 906, 1038
AjnI CCWGG 3 cut(s) 182, 889, 1244
AluBI AGCT 3 cut(s) 428, 467, 821
AluI AGCT 3 cut(s) 428, 467, 821
Alw26I GTCTC 3 cut(s) 377, 948, 1080
AlwI GGATC 3 cut(s) 654, 656, 1024
AoxI GGCC 3 cut(s) 409, 626, 895
ApeKI GCWGC 5 cut(s) 341, 437, 515, 573, 1196
ApoI RAATTY 2 cut(s) 293, 1097
AspS9I GGNCC 2 cut(s) 896, 1237
AsuHPI GGTGA 4 cut(s) 245, 491, 767, 1198
AvaII GGWCC 1 cut(s) 1237
BaeGI GKGCMC 1 cut(s) 140
BanI GGYRCC 1 cut(s) 1007
BauI CACGAG 1 cut(s) 233
BbsI GAAGAC 2 cut(s) 984, 1153
BbvI GCAGC 5 cut(s) 328, 424, 527, 560, 1208
BccI CCATC 1 cut(s) 76
BciT130I CCWGG 3 cut(s) 184, 891, 1246
BciVI GTATCC 1 cut(s) 347
BclI TGATCA 2 cut(s) 586, 769
BcoDI GTCTC 3 cut(s) 377, 948, 1080
BfaI CTAG 6 cut(s) 630, 762, 797, 806, 818, 1160
BfuAI ACCTGC 1 cut(s) 1190
BfuI GTATCC 1 cut(s) 347
BisI GCNGC 7 cut(s) 342, 412, 438, 516, 574, 1011, 1197
BlpI GCTNAGC 1 cut(s) 671
BlsI GCNGC 7 cut(s) 343, 413, 439, 517, 575, 1012, 1198
Bme1390I CCNGG 3 cut(s) 184, 891, 1246
Bme18I GGWCC 1 cut(s) 1237
BmgT120I GGNCC 2 cut(s) 896, 1237
BmiI GGNNCC 1 cut(s) 1009
BmrFI CCNGG 3 cut(s) 184, 891, 1246
BmsI GCATC 2 cut(s) 688, 1120
BpiI GAAGAC 2 cut(s) 984, 1153
Bpu1102I GCTNAGC 1 cut(s) 671
BsaJI CCNNGG 3 cut(s) 49, 665, 1245
Bsc4I CCNNNNNNNGG 7 cut(s) 262, 364, 404, 525, 624, 868, 1246
Bse3DI GCAATG 3 cut(s) 421, 447, 559
BseBI CCWGG 3 cut(s) 184, 891, 1246
BseDI CCNNGG 3 cut(s) 49, 665, 1245
BseGI GGATG 1 cut(s) 703
BseLI CCNNNNNNNGG 7 cut(s) 262, 364, 404, 525, 624, 868, 1246
BseMI GCAATG 3 cut(s) 421, 447, 559
BseMII CTCAG 2 cut(s) 336, 477
BseSI GKGCMC 1 cut(s) 140
BseXI GCAGC 5 cut(s) 328, 424, 527, 560, 1208
Bsh1236I CGCG 1 cut(s) 707
BshFI GGCC 3 cut(s) 411, 628, 897
BshNI GGYRCC 1 cut(s) 1007
BslI CCNNNNNNNGG 7 cut(s) 262, 364, 404, 525, 624, 868, 1246
BsmAI GTCTC 3 cut(s) 377, 948, 1080
BsmBI CGTCTC 1 cut(s) 1080
BsmI GAATGC 1 cut(s) 33
BsnI GGCC 3 cut(s) 411, 628, 897
Bsp1286I GDGCHC 1 cut(s) 140
Bsp1407I TGTACA 1 cut(s) 489
Bsp143I GATC 7 cut(s) 549, 586, 646, 661, 769, 802, 1016
Bsp1720I GCTNAGC 1 cut(s) 671
Bsp19I CCATGG 1 cut(s) 665
BspACI CCGC 4 cut(s) 187, 412, 862, 1011
BspANI GGCC 3 cut(s) 411, 628, 897
BspCNI CTCAG 2 cut(s) 337, 476
BspFNI CGCG 1 cut(s) 707
BspLI GGNNCC 1 cut(s) 1009
BspMI ACCTGC 1 cut(s) 1190
BspPI GGATC 3 cut(s) 654, 656, 1024
BspT107I GGYRCC 1 cut(s) 1007
BsrDI GCAATG 3 cut(s) 421, 447, 559
BsrGI TGTACA 1 cut(s) 489
BssECI CCNNGG 3 cut(s) 49, 665, 1245
BssMI GATC 7 cut(s) 549, 586, 646, 661, 769, 802, 1016
BssSI CACGAG 1 cut(s) 233
BssT1I CCWWGG 2 cut(s) 49, 665
Bst2BI CACGAG 1 cut(s) 233
Bst2UI CCWGG 3 cut(s) 184, 891, 1246
Bst4CI ACNGT 2 cut(s) 856, 1091
BstAUI TGTACA 1 cut(s) 489
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 3 cut(s) 345, 463, 671
BstDSI CCRYGG 1 cut(s) 665
BstEII GGTNACC 1 cut(s) 1220
BstF5I GGATG 1 cut(s) 703
BstFNI CGCG 1 cut(s) 707
BstKTI GATC 7 cut(s) 552, 589, 649, 664, 772, 805, 1019
BstMAI GTCTC 3 cut(s) 377, 948, 1080
BstMBI GATC 7 cut(s) 549, 586, 646, 661, 769, 802, 1016
BstMWI GCNNNNNNNGC 2 cut(s) 434, 570
BstNI CCWGG 3 cut(s) 184, 891, 1246
BstNSI RCATGY 1 cut(s) 437
BstPI GGTNACC 1 cut(s) 1220
BstSCI CCNGG 3 cut(s) 182, 889, 1244
BstSLI GKGCMC 1 cut(s) 140
BstUI CGCG 1 cut(s) 707
BstV1I GCAGC 5 cut(s) 328, 424, 527, 560, 1208
BstV2I GAAGAC 2 cut(s) 984, 1153
BstX2I RGATCY 2 cut(s) 646, 661
BstYI RGATCY 2 cut(s) 646, 661
BsuI GTATCC 1 cut(s) 347
BsuRI GGCC 3 cut(s) 411, 628, 897
BtgI CCRYGG 1 cut(s) 665
BtsCI GGATG 1 cut(s) 703
BtsIMutI CAGTG 2 cut(s) 842, 852
BveI ACCTGC 1 cut(s) 1190
Cac8I GCNNGC 1 cut(s) 435
Cfr13I GGNCC 2 cut(s) 896, 1237
CseI GACGC 1 cut(s) 713
Csp6I GTAC 1 cut(s) 490
CspCI CAANNNNNGTGG 4 cut(s) 192, 227, 318, 353
CviAII CATG 8 cut(s) 359, 434, 509, 530, 666, 677, 917, 1210
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 3 cut(s) 345, 463, 671
DpnI GATC 7 cut(s) 551, 588, 648, 663, 771, 804, 1018
DpnII GATC 7 cut(s) 549, 586, 646, 661, 769, 802, 1016
DraI TTTAAA 1 cut(s) 687
Eco130I CCWWGG 2 cut(s) 49, 665
Eco47I GGWCC 1 cut(s) 1237
Eco57I CTGAAG 1 cut(s) 866
Eco91I GGTNACC 1 cut(s) 1220
EcoO109I RGGNCCY 1 cut(s) 1237
EcoO65I GGTNACC 1 cut(s) 1220
EcoRII CCWGG 3 cut(s) 182, 889, 1244
EcoT14I CCWWGG 2 cut(s) 49, 665
ErhI CCWWGG 2 cut(s) 49, 665
Esp3I CGTCTC 1 cut(s) 1080
FaeI CATG 8 cut(s) 362, 437, 512, 533, 669, 680, 920, 1213
FalI AAGNNNNNCTT 2 cut(s) 818, 850
FatI CATG 8 cut(s) 358, 433, 508, 529, 665, 676, 916, 1209
FbaI TGATCA 2 cut(s) 586, 769
Fnu4HI GCNGC 7 cut(s) 342, 412, 438, 516, 574, 1011, 1197
FokI GGATG 1 cut(s) 710
Fsp4HI GCNGC 7 cut(s) 342, 412, 438, 516, 574, 1011, 1197
FspBI CTAG 6 cut(s) 630, 762, 797, 806, 818, 1160
GluI GCNGC 7 cut(s) 342, 412, 438, 516, 574, 1011, 1197
HaeIII GGCC 3 cut(s) 411, 628, 897
HgaI GACGC 1 cut(s) 713
Hin1II CATG 8 cut(s) 362, 437, 512, 533, 669, 680, 920, 1213
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HinfI GANTC 2 cut(s) 452, 829
HpaI GTTAAC 1 cut(s) 859
HphI GGTGA 4 cut(s) 245, 491, 767, 1198
Hpy166II GTNNAC 2 cut(s) 490, 859
Hpy188I TCNGA 3 cut(s) 457, 774, 997
Hpy188III TCNNGA 3 cut(s) 199, 806, 1079
Hpy8I GTNNAC 2 cut(s) 490, 859
HpyAV CCTTC 3 cut(s) 515, 617, 1136
HpyCH4III ACNGT 2 cut(s) 856, 1091
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 8 cut(s) 232, 390, 433, 440, 515, 1133, 1196, 1255
HpyF10VI GCNNNNNNNGC 2 cut(s) 434, 570
HpyF3I CTNAG 3 cut(s) 345, 463, 671
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 8 cut(s) 362, 437, 512, 533, 669, 680, 920, 1213
Ksp22I TGATCA 2 cut(s) 586, 769
KspAI GTTAAC 1 cut(s) 859
Kzo9I GATC 7 cut(s) 549, 586, 646, 661, 769, 802, 1016
Lsp1109I GCAGC 5 cut(s) 328, 424, 527, 560, 1208
LweI GCATC 2 cut(s) 688, 1120
MaeI CTAG 6 cut(s) 630, 762, 797, 806, 818, 1160
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 4 cut(s) 479, 1049, 1186, 1220
MalI GATC 7 cut(s) 551, 588, 648, 663, 771, 804, 1018
MboI GATC 7 cut(s) 549, 586, 646, 661, 769, 802, 1016
MboII GAAGA 6 cut(s) 133, 296, 859, 932, 989, 1158
MfeI CAATTG 1 cut(s) 906
MflI RGATCY 2 cut(s) 646, 661
MhlI GDGCHC 1 cut(s) 140
MlyI GAGTC 1 cut(s) 823
MmeI TCCRAC 1 cut(s) 422
MseI TTAA 5 cut(s) 249, 686, 858, 972, 1026
MslI CAYNNNNRTG 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 1013
MspR9I CCNGG 3 cut(s) 184, 891, 1246
MunI CAATTG 1 cut(s) 906
Mva1269I GAATGC 1 cut(s) 33
MvaI CCWGG 3 cut(s) 184, 891, 1246
MvnI CGCG 1 cut(s) 707
MwoI GCNNNNNNNGC 2 cut(s) 434, 570
NcoI CCATGG 1 cut(s) 665
NdeII GATC 7 cut(s) 549, 586, 646, 661, 769, 802, 1016
NlaIII CATG 8 cut(s) 362, 437, 512, 533, 669, 680, 920, 1213
NlaIV GGNNCC 1 cut(s) 1009
NmuCI GTSAC 1 cut(s) 479
NspI RCATGY 1 cut(s) 437
PaeI GCATGC 1 cut(s) 437
PctI GAATGC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 452
PflMI CCANNNNNTGG 3 cut(s) 364, 404, 624
PkrI GCNGC 7 cut(s) 343, 413, 439, 517, 575, 1012, 1198
PleI GAGTC 1 cut(s) 823
PpsI GAGTC 1 cut(s) 823
PpuMI RGGWCCY 1 cut(s) 1237
Psp5II RGGWCCY 1 cut(s) 1237
Psp6I CCWGG 3 cut(s) 182, 889, 1244
PspEI GGTNACC 1 cut(s) 1220
PspGI CCWGG 3 cut(s) 182, 889, 1244
PspN4I GGNNCC 1 cut(s) 1009
PspPI GGNCC 2 cut(s) 896, 1237
PspPPI RGGWCCY 1 cut(s) 1237
PsuI RGATCY 2 cut(s) 646, 661
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 5 cut(s) 249, 686, 858, 972, 1026
SatI GCNGC 7 cut(s) 342, 412, 438, 516, 574, 1011, 1197
Sau3AI GATC 7 cut(s) 549, 586, 646, 661, 769, 802, 1016
Sau96I GGNCC 2 cut(s) 896, 1237
SchI GAGTC 1 cut(s) 823
ScrFI CCNGG 3 cut(s) 184, 891, 1246
SduI GDGCHC 1 cut(s) 140
SfaNI GCATC 2 cut(s) 688, 1120
SinI GGWCC 1 cut(s) 1237
SmiMI CAYNNNNRTG 1 cut(s) 258
SphI GCATGC 1 cut(s) 437
SsiI CCGC 4 cut(s) 187, 412, 862, 1011
SspMI CTAG 6 cut(s) 630, 762, 797, 806, 818, 1160
StyD4I CCNGG 3 cut(s) 182, 889, 1244
StyI CCWWGG 2 cut(s) 49, 665
TaaI ACNGT 2 cut(s) 856, 1091
TaiI ACGT 1 cut(s) 213
TatI WGTACW 1 cut(s) 489
TauI GCSGC 2 cut(s) 414, 1013
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 5 cut(s) 249, 686, 858, 972, 1026
Tru9I TTAA 5 cut(s) 249, 686, 858, 972, 1026
TscAI CASTG 2 cut(s) 849, 859
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 5 cut(s) 341, 437, 515, 573, 1196
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 7 cut(s) 497, 546, 713, 739, 933, 1016, 1110
TspRI CASTG 2 cut(s) 849, 859
Van91I CCANNNNNTGG 3 cut(s) 364, 404, 624
VpaK11BI GGWCC 1 cut(s) 1237
XapI RAATTY 2 cut(s) 293, 1097
XbaI TCTAGA 1 cut(s) 805
XceI RCATGY 1 cut(s) 437
XcmI CCANNNNNNNNNTGG 2 cut(s) 147, 166
XspI CTAG 6 cut(s) 630, 762, 797, 806, 818, 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.