Prupe.3G168600_v2.0.a1

Protein trichome birefringence-like 43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Forward (+)
18752319 .. 18760596
8278 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G168600.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 1077 bp
ATGGCTTCTGCTTTTGTGGTACTTCTGGTGCTGCAACTTTTGCAGCAAGTCAATGCAAAGCATAGTTATGAAGCTGAGGGTGGATCAAGATGTGATTTGTACGAGGGAAGATGGGTTTTTGATGATTTACATCCTCTATACGATTCAACTCACTGCCCCTTCATTGAGAAGATTTTCAACTGCCAAAAGAATGGTCGACCTGACAAACTTTACCAGCAATATAGATGGCAGCCATCTGCATGTAACTTACCAAGATTCAGTGCCGAAGATTTCTTACAAAGATTCAAAGATAAACGCATAATGTTTATTGGAGATTCACTGAGTTTGAATCAATGGCAGTCACTTGCATGCATGCTTCACACAGCCATGCCACACTCTGAGTTCACCATAGAGATCCCACCCCTCAAGTACACCACTGAGAGGACCCTTTCCACATTCACATTTCCGCAATACAATGTTTCGGTGATGTTTGCGCGCAATGTATTTCTTGTTGACATTGAAAAAGAGGGTTCTTGGCAAGTTTTGAAACTCAACTCAGTCCAGGACACCGAAGTATGGGAGGGAATGGATGTTTTGATTTTCAATACATGGCATTGGTTTATTCACACCGGGAACATACAACCATGGGATTTCATTCAAGATGGAAAAAATACATACAGAGACATGAATCGCTACGTTGCCTTCGAGCAGGCTTTGGAAACATGGGCTCGATGGGTGGATGAGACCATAGATCCCTCCAAAACCAAGGTCTTTTTCCAAGGAATTTCACCCACTCATTTCAATGCAAGCCTTTGGGGTTTCCATGAGGGAAAGAACTGCAGCAAAGAGATGAGACCACTTCCTGAGCCACCAAGATTTTCAAATCCTGCAGAAGTGATAGTAGAGAAAGTGTTGCAGAGTATGTCAAAGCCAGTCCACTTGCTCAACATTACAAAATTGTCACAACAAAGAACAGATGCACACCCATCCGTGTATGGCTATGGTGCCCAAAATGGCATGGACTGCAGCCATTGGTGCCTTGCTGGTGTTCCTGATGCTTGGAATGAACTTCTTTATGCAGAGCTCATTCGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

359

Amino Acids

41.71

Weight (kDa)

5.85

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 983, 1014
AccI GTMKAC 1 cut(s) 196
AccII CGCG 1 cut(s) 475
AciI CCGC 1 cut(s) 446
AclWI GGATC 3 cut(s) 91, 388, 725
AcsI RAATTY 1 cut(s) 762
AfaI GTAC 3 cut(s) 21, 101, 410
AfiI CCNNNNNNNGG 2 cut(s) 420, 555
AjnI CCWGG 1 cut(s) 540
AjuI GAANNNNNNNTTGG 2 cut(s) 737, 769
AluBI AGCT 2 cut(s) 74, 1063
AluI AGCT 2 cut(s) 74, 1063
Alw21I GWGCWC 1 cut(s) 1065
Alw26I GTCTC 3 cut(s) 654, 716, 826
AlwI GGATC 3 cut(s) 91, 388, 725
ApeKI GCWGC 5 cut(s) 31, 43, 229, 819, 1005
ApoI RAATTY 1 cut(s) 762
ArsI GACNNNNNNTTYG 4 cut(s) 178, 210, 732, 764
Asp700I GAANNNNTTC 1 cut(s) 173
AspLEI GCGC 2 cut(s) 475, 477
AspS9I GGNCC 1 cut(s) 423
AsuC2I CCSGG 1 cut(s) 610
AsuHPI GGTGA 3 cut(s) 376, 475, 759
AvaII GGWCC 1 cut(s) 423
BaeGI GKGCMC 1 cut(s) 988
BanI GGYRCC 2 cut(s) 983, 1014
BanII GRGCYC 2 cut(s) 709, 1065
BarI GAAGNNNNNNTAC 2 cut(s) 258, 290
Bbv12I GWGCWC 1 cut(s) 1065
BbvCI CCTCAGC 1 cut(s) 75
BbvI GCAGC 5 cut(s) 18, 55, 241, 831, 1017
BccI CCATC 6 cut(s) 105, 219, 241, 635, 705, 973
BciT130I CCWGG 1 cut(s) 542
BcnI CCSGG 1 cut(s) 610
BcoDI GTCTC 3 cut(s) 654, 716, 826
BfmI CTRYAG 3 cut(s) 817, 867, 1003
BisI GCNGC 5 cut(s) 32, 44, 230, 820, 1006
BlsI GCNGC 5 cut(s) 33, 45, 231, 821, 1007
Bme1390I CCNGG 2 cut(s) 542, 610
Bme18I GGWCC 1 cut(s) 423
BmgT120I GGNCC 1 cut(s) 423
BmiI GGNNCC 3 cut(s) 425, 985, 1016
BmrFI CCNGG 2 cut(s) 542, 610
BmsI GCATC 2 cut(s) 946, 1024
Bpu10I CCTNAGC 2 cut(s) 75, 843
BpuEI CTTGAG 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 610
BsaBI GATNNNNATC 1 cut(s) 129
BsaI GGTCTC 2 cut(s) 716, 826
BsaJI CCNNGG 3 cut(s) 623, 744, 757
Bsc4I CCNNNNNNNGG 2 cut(s) 420, 555
Bse1I ACTGG 1 cut(s) 911
Bse3DI GCAATG 1 cut(s) 484
Bse8I GATNNNNATC 1 cut(s) 129
BseBI CCWGG 1 cut(s) 542
BseDI CCNNGG 3 cut(s) 623, 744, 757
BseGI GGATG 4 cut(s) 130, 574, 724, 965
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 420, 555
BseMI GCAATG 1 cut(s) 484
BseMII CTCAG 6 cut(s) 66, 311, 369, 408, 549, 834
BseNI ACTGG 1 cut(s) 911
BsePI GCGCGC 1 cut(s) 473
BseSI GKGCMC 1 cut(s) 988
BseXI GCAGC 5 cut(s) 18, 55, 241, 831, 1017
Bsh1236I CGCG 1 cut(s) 475
BshNI GGYRCC 2 cut(s) 983, 1014
BsiHKAI GWGCWC 1 cut(s) 1065
BsiSI CCGG 1 cut(s) 609
BslI CCNNNNNNNGG 2 cut(s) 420, 555
BsmAI GTCTC 3 cut(s) 654, 716, 826
Bso31I GGTCTC 2 cut(s) 716, 826
Bsp1286I GDGCHC 3 cut(s) 709, 988, 1065
Bsp143I GATC 3 cut(s) 83, 393, 730
Bsp19I CCATGG 1 cut(s) 623
BspACI CCGC 1 cut(s) 446
BspCNI CTCAG 6 cut(s) 67, 312, 370, 409, 548, 835
BspFNI CGCG 1 cut(s) 475
BspLI GGNNCC 3 cut(s) 425, 985, 1016
BspMAI CTGCAG 3 cut(s) 821, 871, 1007
BspPI GGATC 3 cut(s) 91, 388, 725
BspT107I GGYRCC 2 cut(s) 983, 1014
BspTNI GGTCTC 2 cut(s) 716, 826
BsrDI GCAATG 1 cut(s) 484
BsrI ACTGG 1 cut(s) 911
BssECI CCNNGG 3 cut(s) 623, 744, 757
BssHII GCGCGC 1 cut(s) 473
BssMI GATC 3 cut(s) 83, 393, 730
BssT1I CCWWGG 3 cut(s) 623, 744, 757
Bst2UI CCWGG 1 cut(s) 542
BstAPI GCANNNNNTGC 2 cut(s) 40, 1002
BstC8I GCNNGC 5 cut(s) 349, 353, 475, 690, 787
BstDEI CTNAG 6 cut(s) 75, 320, 378, 417, 535, 843
BstDSI CCRYGG 1 cut(s) 623
BstF5I GGATG 4 cut(s) 130, 574, 724, 965
BstFNI CGCG 1 cut(s) 475
BstHHI GCGC 2 cut(s) 475, 477
BstKTI GATC 3 cut(s) 86, 396, 733
BstMAI GTCTC 3 cut(s) 654, 716, 826
BstMBI GATC 3 cut(s) 83, 393, 730
BstMWI GCNNNNNNNGC 3 cut(s) 40, 1002, 1014
BstNI CCWGG 1 cut(s) 542
BstNSI RCATGY 3 cut(s) 243, 351, 355
BstSCI CCNGG 2 cut(s) 540, 608
BstSFI CTRYAG 3 cut(s) 817, 867, 1003
BstSLI GKGCMC 1 cut(s) 988
BstUI CGCG 1 cut(s) 475
BstV1I GCAGC 5 cut(s) 18, 55, 241, 831, 1017
BstX2I RGATCY 2 cut(s) 393, 730
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 2 cut(s) 393, 730
BtgI CCRYGG 1 cut(s) 623
BtsCI GGATG 4 cut(s) 130, 574, 724, 965
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 4 cut(s) 151, 265, 317, 414
Cac8I GCNNGC 5 cut(s) 349, 353, 475, 690, 787
CfoI GCGC 2 cut(s) 475, 477
Cfr13I GGNCC 1 cut(s) 423
Csp6I GTAC 3 cut(s) 20, 100, 409
CviQI GTAC 3 cut(s) 20, 100, 409
DdeI CTNAG 6 cut(s) 75, 320, 378, 417, 535, 843
DpnI GATC 3 cut(s) 85, 395, 732
DpnII GATC 3 cut(s) 83, 393, 730
Ecl136II GAGCTC 1 cut(s) 1063
Eco130I CCWWGG 3 cut(s) 623, 744, 757
Eco24I GRGCYC 2 cut(s) 709, 1065
Eco31I GGTCTC 2 cut(s) 716, 826
Eco47I GGWCC 1 cut(s) 423
Eco53kI GAGCTC 1 cut(s) 1063
EcoICRI GAGCTC 1 cut(s) 1063
EcoO109I RGGNCCY 1 cut(s) 423
EcoRII CCWGG 1 cut(s) 540
EcoT14I CCWWGG 3 cut(s) 623, 744, 757
EcoT22I ATGCAT 1 cut(s) 353
EcoT38I GRGCYC 2 cut(s) 709, 1065
ErhI CCWWGG 3 cut(s) 623, 744, 757
FblI GTMKAC 1 cut(s) 196
Fnu4HI GCNGC 5 cut(s) 32, 44, 230, 820, 1006
FokI GGATG 4 cut(s) 117, 581, 731, 952
FriOI GRGCYC 2 cut(s) 709, 1065
Fsp4HI GCNGC 5 cut(s) 32, 44, 230, 820, 1006
GlaI GCGC 2 cut(s) 474, 476
GluI GCNGC 5 cut(s) 32, 44, 230, 820, 1006
HapII CCGG 1 cut(s) 609
HhaI GCGC 2 cut(s) 475, 477
Hin6I GCGC 2 cut(s) 473, 475
HinP1I GCGC 2 cut(s) 473, 475
HincII GTYRAC 2 cut(s) 197, 493
HindII GTYRAC 2 cut(s) 197, 493
HinfI GANTC 6 cut(s) 143, 255, 282, 314, 328, 667
HpaII CCGG 1 cut(s) 609
HphI GGTGA 3 cut(s) 376, 475, 759
Hpy166II GTNNAC 5 cut(s) 197, 384, 411, 493, 916
Hpy188I TCNGA 2 cut(s) 379, 1071
Hpy188III TCNNGA 4 cut(s) 87, 638, 842, 1031
Hpy8I GTNNAC 5 cut(s) 197, 384, 411, 493, 916
HpyAV CCTTC 2 cut(s) 169, 691
HpyCH4IV ACGT 1 cut(s) 675
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 1002, 1014
HpyF3I CTNAG 6 cut(s) 75, 320, 378, 417, 535, 843
HpySE526I ACGT 1 cut(s) 675
HspAI GCGC 2 cut(s) 473, 475
Kzo9I GATC 3 cut(s) 83, 393, 730
Lsp1109I GCAGC 5 cut(s) 18, 55, 241, 831, 1017
LweI GCATC 2 cut(s) 946, 1024
MaeII ACGT 1 cut(s) 675
MaeIII GTNAC 3 cut(s) 242, 339, 939
MalI GATC 3 cut(s) 85, 395, 732
MboI GATC 3 cut(s) 83, 393, 730
MboII GAAGA 3 cut(s) 120, 181, 278
MflI RGATCY 2 cut(s) 393, 730
MhlI GDGCHC 3 cut(s) 709, 988, 1065
MluCI AATT 3 cut(s) 762, 935, 1072
MnlI CCTC 9 cut(s) 70, 97, 144, 413, 414, 499, 553, 745, 799
Mph1103I ATGCAT 1 cut(s) 353
MroXI GAANNNNTTC 1 cut(s) 173
MslI CAYNNNNRTG 5 cut(s) 66, 238, 346, 365, 780
MspI CCGG 1 cut(s) 609
MspR9I CCNGG 2 cut(s) 542, 610
MvaI CCWGG 1 cut(s) 542
MvnI CGCG 1 cut(s) 475
MwoI GCNNNNNNNGC 3 cut(s) 40, 1002, 1014
NciI CCSGG 1 cut(s) 610
NcoI CCATGG 1 cut(s) 623
NdeII GATC 3 cut(s) 83, 393, 730
NlaIV GGNNCC 3 cut(s) 425, 985, 1016
NmuCI GTSAC 2 cut(s) 339, 939
NsiI ATGCAT 1 cut(s) 353
NspI RCATGY 3 cut(s) 243, 351, 355
PaeI GCATGC 2 cut(s) 351, 355
PauI GCGCGC 1 cut(s) 473
PcsI WCGNNNNNNNCGW 1 cut(s) 681
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 6 cut(s) 143, 255, 282, 314, 328, 667
PfoI TCCNGGA 1 cut(s) 540
PkrI GCNGC 5 cut(s) 33, 45, 231, 821, 1007
PpuMI RGGWCCY 1 cut(s) 423
Psp124BI GAGCTC 1 cut(s) 1065
Psp5II RGGWCCY 1 cut(s) 423
Psp6I CCWGG 1 cut(s) 540
PspGI CCWGG 1 cut(s) 540
PspN4I GGNNCC 3 cut(s) 425, 985, 1016
PspPI GGNCC 1 cut(s) 423
PspPPI RGGWCCY 1 cut(s) 423
PstI CTGCAG 3 cut(s) 821, 871, 1007
PsuI RGATCY 2 cut(s) 393, 730
PteI GCGCGC 1 cut(s) 473
RsaI GTAC 3 cut(s) 21, 101, 410
RsaNI GTAC 3 cut(s) 20, 100, 409
RseI CAYNNNNRTG 5 cut(s) 66, 238, 346, 365, 780
SacI GAGCTC 1 cut(s) 1065
SalI GTCGAC 1 cut(s) 195
SatI GCNGC 5 cut(s) 32, 44, 230, 820, 1006
Sau3AI GATC 3 cut(s) 83, 393, 730
Sau96I GGNCC 1 cut(s) 423
ScrFI CCNGG 2 cut(s) 542, 610
SduI GDGCHC 3 cut(s) 709, 988, 1065
SetI ASST 5 cut(s) 76, 202, 678, 750, 1065
SfaNI GCATC 2 cut(s) 946, 1024
SfcI CTRYAG 3 cut(s) 817, 867, 1003
SinI GGWCC 1 cut(s) 423
SmiMI CAYNNNNRTG 5 cut(s) 66, 238, 346, 365, 780
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
SphI GCATGC 2 cut(s) 351, 355
Sse9I AATT 3 cut(s) 762, 935, 1072
SsiI CCGC 1 cut(s) 446
SstI GAGCTC 1 cut(s) 1065
StyD4I CCNGG 2 cut(s) 540, 608
StyI CCWWGG 3 cut(s) 623, 744, 757
TaiI ACGT 1 cut(s) 678
TaqI TCGA 3 cut(s) 196, 684, 709
TasI AATT 3 cut(s) 762, 935, 1072
TatI WGTACW 1 cut(s) 408
TfiI GAWTC 6 cut(s) 143, 255, 282, 314, 328, 667
TscAI CASTG 4 cut(s) 158, 265, 324, 421
TseFI GTSAC 2 cut(s) 339, 939
TseI GCWGC 5 cut(s) 31, 43, 229, 819, 1005
Tsp45I GTSAC 2 cut(s) 339, 939
TspDTI ATGAA 5 cut(s) 84, 151, 622, 680, 1059
TspGWI ACGGA 1 cut(s) 958
TspRI CASTG 4 cut(s) 158, 265, 324, 421
VpaK11BI GGWCC 1 cut(s) 423
XapI RAATTY 1 cut(s) 762
XceI RCATGY 3 cut(s) 243, 351, 355
XmiI GTMKAC 1 cut(s) 196
XmnI GAANNNNTTC 1 cut(s) 173
Zsp2I ATGCAT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.