Prupe.3G174000_v2.0.a1

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Forward (+)
19130764 .. 19131901
1138 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G174000.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 885 bp
ATGACACAAGACTTGGCGTTGGCGGCAAAGATGAACCAGAGTCTAGCGGAAGCACAACACCAACAACTTCCTTGCCCTTCAAGCCTCTCACCTGCTCCGCTGGTCACCGGCAGTGATGCTGTCGTTCCCGATCCTATTCCCACGCCACCAACCTCTTCTTCTTTCGCCAATCCCATTGCCGTATTGAACAACAACAAGAAGAAGCTCATAATTGGTCTTATTGTGTATGTCATAATTGGCATTGTCATATTCTGCACAACAAGTTTCGAGCTCGAAAAAACCCACAAGCTTGTGGATGCTCTGTACTACATTGTGGTCACGCTCTGCACCATTGGATATGGCGACATTGTTCCGAGTACCACAAAATCAGTCTTGTTGAGGCCCTCGGATGGGAAGTTCAAGAACATGATCCAGACGTATATGGTGGATAAAGAGAAAGGAAGAATCAGGACAAGAAGCAAGATTGGGTTGGCATTGGGAATTGTTATTGTTTGTATAGGTATAGGGATATTCGCAGTGCATTTTCTGGAGGGCATGAGCTGGCCTGATAGCATTTACCTCTCTGTTACATCAACTACTGCAAGAAGGTGTTTTGCAATTGTGTGGTTATTGGTAAGCACATTGGCTGTTGCCAGGGCATTTCTGTATTTCACTGAGCTTAGAATGGAGAAGAGGAATCGCCGAATCGCCGATTGGGTTCTTCAGAAGGAGGTTACTCTGAGGGATTTAAAGGCAGCAGACCTTGATAATGATGGATGCATCAGCAAATCAGATTTTATCATATACAAGCTTAAGGAGATGGGAAGGGTTGCAGAGAGTGACATCCTGCAAATCTGCAAGAAATTTGATTCCTTGGAACATAGTAATAAGGACTACTCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

295

Amino Acids

32.63

Weight (kDa)

8.82

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 100
Acc36I ACCTGC 1 cut(s) 100
AciI CCGC 3 cut(s) 23, 47, 98
AclWI GGATC 2 cut(s) 125, 403
AcsI RAATTY 1 cut(s) 842
AcuI CTGAAG 1 cut(s) 686
AfaI GTAC 2 cut(s) 305, 358
AfiI CCNNNNNNNGG 2 cut(s) 389, 390
AflII CTTAAG 1 cut(s) 791
AgsI TTSAA 3 cut(s) 81, 187, 400
AjnI CCWGG 1 cut(s) 632
AjuI GAANNNNNNNTTGG 4 cut(s) 142, 174, 676, 708
AloI GAACNNNNNNTCC 2 cut(s) 380, 412
AluBI AGCT 6 cut(s) 205, 271, 289, 540, 658, 790
AluI AGCT 6 cut(s) 205, 271, 289, 540, 658, 790
Alw21I GWGCWC 1 cut(s) 273
AlwI GGATC 2 cut(s) 125, 403
AoxI GGCC 2 cut(s) 380, 542
ApeKI GCWGC 1 cut(s) 734
ApoI RAATTY 1 cut(s) 842
AspS9I GGNCC 1 cut(s) 381
AsuHPI GGTGA 2 cut(s) 81, 97
BanII GRGCYC 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 746
BccI CCATC 3 cut(s) 383, 746, 793
BceAI ACGGC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 634
BfaI CTAG 1 cut(s) 44
BfrI CTTAAG 1 cut(s) 791
BfuAI ACCTGC 1 cut(s) 100
BisI GCNGC 2 cut(s) 24, 735
BlsI GCNGC 2 cut(s) 25, 736
Bme1390I CCNGG 1 cut(s) 634
BmgT120I GGNCC 1 cut(s) 381
BmrFI CCNGG 1 cut(s) 634
BmsI GCATC 4 cut(s) 106, 286, 746, 768
BpmI CTGGAG 1 cut(s) 548
BsaJI CCNNGG 3 cut(s) 384, 633, 852
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 390
Bse118I RCCGGY 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 634
BseDI CCNNGG 3 cut(s) 384, 633, 852
BseGI GGATG 4 cut(s) 301, 394, 761, 822
BseLI CCNNNNNNNGG 2 cut(s) 389, 390
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 2 cut(s) 645, 710
BseXI GCAGC 1 cut(s) 746
BsgI GTGCAG 2 cut(s) 238, 310
BshFI GGCC 2 cut(s) 382, 544
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 1 cut(s) 108
BslI CCNNNNNNNGG 2 cut(s) 389, 390
BsnI GGCC 2 cut(s) 382, 544
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 2 cut(s) 130, 408
BspACI CCGC 3 cut(s) 23, 47, 98
BspANI GGCC 2 cut(s) 382, 544
BspCNI CTCAG 2 cut(s) 646, 711
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 2 cut(s) 125, 403
BspTI CTTAAG 1 cut(s) 791
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 3 cut(s) 384, 633, 852
BssMI GATC 2 cut(s) 130, 408
BssT1I CCWWGG 1 cut(s) 852
Bst2UI CCWGG 1 cut(s) 634
Bst6I CTCTTC 2 cut(s) 160, 665
BstAFI CTTAAG 1 cut(s) 791
BstC8I GCNNGC 1 cut(s) 542
BstDEI CTNAG 3 cut(s) 654, 659, 719
BstEII GGTNACC 1 cut(s) 103
BstF5I GGATG 4 cut(s) 301, 394, 761, 822
BstKTI GATC 2 cut(s) 133, 411
BstMBI GATC 2 cut(s) 130, 408
BstMWI GCNNNNNNNGC 2 cut(s) 23, 81
BstNI CCWGG 1 cut(s) 634
BstPI GGTNACC 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 632
BstV1I GCAGC 1 cut(s) 746
BsuRI GGCC 2 cut(s) 382, 544
BtsCI GGATG 4 cut(s) 301, 394, 761, 822
BtsI GCAGTG 2 cut(s) 118, 522
BtsIMutI CAGTG 3 cut(s) 118, 522, 651
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 542
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 381
Csp6I GTAC 2 cut(s) 304, 357
CviAII CATG 2 cut(s) 406, 535
CviQI GTAC 2 cut(s) 304, 357
DdeI CTNAG 3 cut(s) 654, 659, 719
DpnI GATC 2 cut(s) 132, 410
DpnII GATC 2 cut(s) 130, 408
DraI TTTAAA 1 cut(s) 729
Eam1104I CTCTTC 2 cut(s) 160, 665
EarI CTCTTC 2 cut(s) 160, 665
Ecl136II GAGCTC 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 852
Eco24I GRGCYC 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 686
Eco91I GGTNACC 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 271
EcoO109I RGGNCCY 1 cut(s) 381
EcoO65I GGTNACC 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 632
EcoT14I CCWWGG 1 cut(s) 852
EcoT22I ATGCAT 1 cut(s) 761
EcoT38I GRGCYC 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 852
FaeI CATG 2 cut(s) 409, 538
FatI CATG 2 cut(s) 405, 534
Fnu4HI GCNGC 2 cut(s) 24, 735
FokI GGATG 4 cut(s) 308, 401, 768, 809
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 2 cut(s) 24, 735
FspBI CTAG 1 cut(s) 44
GluI GCNGC 2 cut(s) 24, 735
GsuI CTGGAG 1 cut(s) 548
HaeIII GGCC 2 cut(s) 382, 544
HapII CCGG 1 cut(s) 108
Hin1II CATG 2 cut(s) 409, 538
HindIII AAGCTT 2 cut(s) 287, 788
HinfI GANTC 5 cut(s) 40, 444, 676, 684, 848
HpaII CCGG 1 cut(s) 108
HphI GGTGA 2 cut(s) 81, 97
Hpy188I TCNGA 5 cut(s) 354, 388, 705, 720, 772
Hpy188III TCNNGA 5 cut(s) 128, 400, 412, 448, 527
HpyAV CCTTC 4 cut(s) 87, 579, 700, 798
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 9 cut(s) 255, 327, 520, 581, 596, 759, 812, 829, 837
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 81
HpyF3I CTNAG 3 cut(s) 654, 659, 719
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 2 cut(s) 409, 538
Kzo9I GATC 2 cut(s) 130, 408
LmnI GCTCC 1 cut(s) 100
Lsp1109I GCAGC 1 cut(s) 746
LweI GCATC 4 cut(s) 106, 286, 746, 768
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 5 cut(s) 103, 316, 565, 712, 818
MalI GATC 2 cut(s) 132, 410
MboI GATC 2 cut(s) 130, 408
MboII GAAGA 6 cut(s) 147, 150, 211, 453, 682, 692
MfeI CAATTG 1 cut(s) 597
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 5 cut(s) 210, 234, 480, 597, 842
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 9 cut(s) 95, 163, 372, 394, 523, 569, 666, 703, 714
Mph1103I ATGCAT 1 cut(s) 761
MseI TTAA 2 cut(s) 728, 792
MspA1I CMGCKG 1 cut(s) 100
MspCI CTTAAG 1 cut(s) 791
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 634
MunI CAATTG 1 cut(s) 597
MvaI CCWGG 1 cut(s) 634
MwoI GCNNNNNNNGC 2 cut(s) 23, 81
NdeII GATC 2 cut(s) 130, 408
NlaIII CATG 2 cut(s) 409, 538
NmuCI GTSAC 3 cut(s) 103, 316, 818
NsiI ATGCAT 1 cut(s) 761
PaqCI CACCTGC 1 cut(s) 100
PfeI GAWTC 4 cut(s) 444, 676, 684, 848
PkrI GCNGC 2 cut(s) 25, 736
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
Psp124BI GAGCTC 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 632
PspEI GGTNACC 1 cut(s) 103
PspGI CCWGG 1 cut(s) 632
PspPI GGNCC 1 cut(s) 381
RsaI GTAC 2 cut(s) 305, 358
RsaNI GTAC 2 cut(s) 304, 357
SacI GAGCTC 1 cut(s) 273
SaqAI TTAA 2 cut(s) 728, 792
SatI GCNGC 2 cut(s) 24, 735
Sau3AI GATC 2 cut(s) 130, 408
Sau96I GGNCC 1 cut(s) 381
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 634
SduI GDGCHC 1 cut(s) 273
SfaNI GCATC 4 cut(s) 106, 286, 746, 768
SmlI CTYRAG 1 cut(s) 791
SmoI CTYRAG 1 cut(s) 791
Sse9I AATT 5 cut(s) 210, 234, 480, 597, 842
SsiI CCGC 3 cut(s) 23, 47, 98
SspMI CTAG 1 cut(s) 44
SstI GAGCTC 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 632
StyI CCWWGG 1 cut(s) 852
TaiI ACGT 1 cut(s) 419
TaqI TCGA 2 cut(s) 267, 273
TasI AATT 5 cut(s) 210, 234, 480, 597, 842
TatI WGTACW 1 cut(s) 303
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 4 cut(s) 444, 676, 684, 848
Tru1I TTAA 2 cut(s) 728, 792
Tru9I TTAA 2 cut(s) 728, 792
TscAI CASTG 3 cut(s) 118, 522, 658
TseFI GTSAC 3 cut(s) 103, 316, 818
TseI GCWGC 1 cut(s) 734
Tsp45I GTSAC 3 cut(s) 103, 316, 818
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 3 cut(s) 118, 522, 658
Vha464I CTTAAG 1 cut(s) 791
XapI RAATTY 1 cut(s) 842
XspI CTAG 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.