Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19184322 .. 19185343

Gene Structure 1022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G174800.1_v2.0.a1.CDS.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCCTCTTCAACAATGGCTCTCTCCTCCCCTTCTCTTGCTGGCCAAGCTGTCAAGCTCGTTACAATGCGCAAAACCGCATCCAAGTCCAAAAATGTTTCATCCAGCAGTCCGTGGTACGGCCCCGACCGTGTCAAATACTTGGGCCCGTTCTCTGAATTCCCCGGTGATTACGGTTGGGACACTGCTGGGCTCTCAGCTGACCCAGAAACCTTTACCAAAAACCGTGAACTTGAAGTCATCCACTCAAGATGGGCCATGCTCGGGGCTTTGGGCTATGATTTCCCCGAACTCTTGTCTCGTAACGGAGTCAAAGTTGCAGGTGGGCCTCTCGGAGAGATCACTGACCCATTATATCCAGGTGGGAGCTTTGACCCATTAGGCCTTGCAGAGGATCCAGAGGCTCTCGCTGAGCTGAAGAATGGAAGACTCGCCATGTTTTCCATGTTTGGGTTCTTTGTGCAGGCCATTGTTACTGGAAAGGGACCAATAGAGAACTTAGCTGACCACTTGGCTGATCCTGAATATAAGAACAAATCTGATAAATGTTCTTTGAGTATACATTTGTATGGGAATTTTTCACCTTACTTCAAAAACTCAATGTTCTTAGTTCTGACAACTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

209

Amino Acids

22.59

Weight (kDa)

5.93

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	311
Acc16I	TGCGCA	1 cut(s)	71
Acc36I	ACCTGC	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	559
AciI	CCGC	1 cut(s)	78
AclWI	GGATC	3 cut(s)	389, 402, 512
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	2 cut(s)	158, 574
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	4 cut(s)	119, 264, 391, 450
AgsI	TTSAA	3 cut(s)	12, 236, 592
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	6 cut(s)	50, 58, 200, 369, 415, 503
AluI	AGCT	6 cut(s)	50, 58, 200, 369, 415, 503
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	3 cut(s)	389, 402, 512
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	8 cut(s)	3, 43, 121, 145, 255, 326, 382, 465
ApaI	GGGCCC	1 cut(s)	149
ApoI	RAATTY	2 cut(s)	158, 574
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	6 cut(s)	122, 145, 146, 255, 326, 485
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	179, 573
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	485
BaeGI	GKGCMC	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	45
BamHI	GGATCC	1 cut(s)	394
BanII	GRGCYC	2 cut(s)	149, 195
BbsI	GAAGAC	1 cut(s)	433
BccI	CCATC	1 cut(s)	246
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	360
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	303
BfuAI	ACCTGC	1 cut(s)	311
BlpI	GCTNAGC	1 cut(s)	411
Bme1390I	CCNGG	2 cut(s)	165, 360
Bme18I	GGWCC	1 cut(s)	485
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	6 cut(s)	122, 145, 146, 255, 326, 485
BmiI	GGNNCC	4 cut(s)	124, 147, 396, 486
BmrFI	CCNGG	2 cut(s)	165, 360
BmsI	GCATC	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	433
Bpu1102I	GCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	113, 163
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	4 cut(s)	119, 264, 391, 450
Bse1I	ACTGG	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	113, 163
BseGI	GGATG	3 cut(s)	80, 101, 240
BseLI	CCNNNNNNNGG	4 cut(s)	119, 264, 391, 450
BseMII	CTCAG	2 cut(s)	210, 402
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	16
BseSI	GKGCMC	1 cut(s)	149
BseYI	CCCAGC	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	482
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	8 cut(s)	5, 45, 123, 147, 257, 328, 384, 467
BsiEI	CGRYCG	1 cut(s)	130
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	2 cut(s)	194, 498
BslI	CCNNNNNNNGG	4 cut(s)	119, 264, 391, 450
BsmAI	GTCTC	1 cut(s)	303
BsmFI	GGGAC	2 cut(s)	194, 498
BsnI	GGCC	8 cut(s)	5, 45, 123, 147, 257, 328, 384, 467
BsoBI	CYCGRG	1 cut(s)	263
Bsp120I	GGGCCC	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	149, 195
Bsp143I	GATC	3 cut(s)	339, 394, 517
Bsp1720I	GCTNAGC	1 cut(s)	411
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	8 cut(s)	5, 45, 123, 147, 257, 328, 384, 467
BspCNI	CTCAG	2 cut(s)	209, 403
BspLI	GGNNCC	4 cut(s)	124, 147, 396, 486
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	3 cut(s)	389, 402, 512
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	2 cut(s)	113, 163
BssMI	GATC	3 cut(s)	339, 394, 517
BssNAI	GTATAC	1 cut(s)	560
Bst1107I	GTATAC	1 cut(s)	560
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	3 cut(s)	131, 176, 227
Bst6I	CTCTTC	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	43, 465
BstDEI	CTNAG	4 cut(s)	196, 411, 499, 607
BstDSI	CCRYGG	1 cut(s)	113
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstF5I	GGATG	3 cut(s)	80, 101, 240
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	3 cut(s)	342, 397, 520
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	3 cut(s)	339, 394, 517
BstMCI	CGRYCG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	360
BstSCI	CCNGG	2 cut(s)	163, 358
BstSLI	GKGCMC	1 cut(s)	149
BstV2I	GAAGAC	1 cut(s)	433
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BstZ17I	GTATAC	1 cut(s)	560
BsuRI	GGCC	8 cut(s)	5, 45, 123, 147, 257, 328, 384, 467
BtgI	CCRYGG	1 cut(s)	113
BtsCI	GGATG	3 cut(s)	80, 101, 240
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	183, 342
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	2 cut(s)	43, 465
CfoI	GCGC	1 cut(s)	72
Cfr13I	GGNCC	6 cut(s)	122, 145, 146, 255, 326, 485
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	3 cut(s)	259, 436, 445
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	4 cut(s)	196, 411, 499, 607
DpnI	GATC	3 cut(s)	341, 396, 519
DpnII	GATC	3 cut(s)	339, 394, 517
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Eco147I	AGGCCT	1 cut(s)	384
Eco24I	GRGCYC	2 cut(s)	149, 195
Eco47I	GGWCC	1 cut(s)	485
Eco57I	CTGAAG	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	263
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoRI	GAATTC	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	358
EcoT38I	GRGCYC	2 cut(s)	149, 195
FaeI	CATG	3 cut(s)	262, 439, 448
FaiI	YATR	8 cut(s)	260, 279, 355, 437, 446, 528, 560, 570
FaqI	GGGAC	2 cut(s)	194, 498
FatI	CATG	3 cut(s)	258, 435, 444
FblI	GTMKAC	1 cut(s)	559
FokI	GGATG	3 cut(s)	67, 88, 227
FriOI	GRGCYC	2 cut(s)	149, 195
FspI	TGCGCA	1 cut(s)	71
GlaI	GCGC	1 cut(s)	71
GsaI	CCCAGC	1 cut(s)	192
HaeIII	GGCC	8 cut(s)	5, 45, 123, 147, 257, 328, 384, 467
HapII	CCGG	1 cut(s)	165
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	3 cut(s)	262, 439, 448
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	2 cut(s)	309, 429
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	2 cut(s)	179, 573
Hpy166II	GTNNAC	2 cut(s)	230, 560
Hpy188I	TCNGA	4 cut(s)	157, 335, 541, 615
Hpy188III	TCNNGA	3 cut(s)	249, 398, 521
Hpy8I	GTNNAC	2 cut(s)	230, 560
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	3 cut(s)	131, 176, 227
HpyCH4V	TGCA	3 cut(s)	320, 389, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	4 cut(s)	196, 411, 499, 607
Hsp92II	CATG	3 cut(s)	262, 439, 448
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	3 cut(s)	339, 394, 517
LmnI	GCTCC	1 cut(s)	366
LweI	GCATC	1 cut(s)	89
MaeIII	GTNAC	3 cut(s)	61, 302, 472
MalI	GATC	3 cut(s)	341, 396, 519
MboI	GATC	3 cut(s)	339, 394, 517
MboII	GAAGA	2 cut(s)	430, 438
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	2 cut(s)	149, 195
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	2 cut(s)	158, 574
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	2 cut(s)	318, 423
MnlI	CCTC	5 cut(s)	16, 37, 339, 385, 394
Mox20I	TGGCCA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	567
Msp20I	TGGCCA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	2 cut(s)	165, 360
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	3 cut(s)	339, 394, 517
NlaIII	CATG	3 cut(s)	262, 439, 448
NlaIV	GGNNCC	4 cut(s)	124, 147, 396, 486
NsbI	TGCGCA	1 cut(s)	71
PaqCI	CACCTGC	1 cut(s)	311
PceI	AGGCCT	1 cut(s)	384
PflFI	GACNNNGTC	1 cut(s)	131
PleI	GAGTC	2 cut(s)	317, 423
PpsI	GAGTC	2 cut(s)	317, 423
Psp6I	CCWGG	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	4 cut(s)	124, 147, 396, 486
PspOMI	GGGCCC	1 cut(s)	145
PspPI	GGNCC	6 cut(s)	122, 145, 146, 255, 326, 485
PsuI	RGATCY	1 cut(s)	394
PsyI	GACNNNGTC	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	567
Sau3AI	GATC	3 cut(s)	339, 394, 517
Sau96I	GGNCC	6 cut(s)	122, 145, 146, 255, 326, 485
SchI	GAGTC	2 cut(s)	318, 423
ScrFI	CCNGG	2 cut(s)	165, 360
SduI	GDGCHC	2 cut(s)	149, 195
SfaNI	GCATC	1 cut(s)	89
SinI	GGWCC	1 cut(s)	485
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	2 cut(s)	158, 574
SseBI	AGGCCT	1 cut(s)	384
SsiI	CCGC	1 cut(s)	78
StuI	AGGCCT	1 cut(s)	384
StyD4I	CCNGG	2 cut(s)	163, 358
TaaI	ACNGT	3 cut(s)	131, 176, 227
TaqI	TCGA	1 cut(s)	622
TasI	AATT	2 cut(s)	158, 574
TscAI	CASTG	2 cut(s)	190, 349
TspDTI	ATGAA	1 cut(s)	90
TspGWI	ACGGA	2 cut(s)	102, 321
TspRI	CASTG	2 cut(s)	190, 349
Tth111I	GACNNNGTC	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	485
XagI	CCTNNNNNAGG	1 cut(s)	389
XapI	RAATTY	2 cut(s)	158, 574
XmiI	GTMKAC	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.