Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19226992 .. 19227856

Gene Structure 865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G175500.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCCTTACTGTCGTCAAAGAGAAACTCCATTTCCGAGTGGTACATTCTGGAAGCTTTTCATACTTTTACAACTGGGGGAAAAACTGATTCAGTTATGGCTTCCCTGCGATTGAGCTATGATGAACTCCTGCCTTCTCTAAAGCACTGCCTGTTGTGTTTCTCCATATATCCTCAAGACTTTGAGATAAATGCTGATAATTTAATCCCCTGGTGGATTGGAGAGGGCCTGGTCCAGGGCAAGGACTCAAAAACAGCTCTACAACTACTCAGCAGATGCCTCGTTGAAATTGTGCAGTGTCGAGGCCTTGATGGGAGAGTCTATACGTGTAAGATAATAGAAGTGCCATCTTCAATTAATAAACTCCGCAACCTCCCAAGTGTTGGTTTCAAATGGATGCTGATCATCCTGGACCTAGACAAGTGCCCCATCAAGTACTTGCCTCGGGGATTAAGAAGGCTTTCGTATCTTCAAGAACTCTATGGATTCGTTGTGAGTCATCCTAGAAAGCTATGTGCCTCTCTTCTTAAGATTAAGGAACTGACCACCATAAGAGAACGACAAATACGTATAAGTAATACCACAGTAATCTCAGACAATGCACCTGATGTCCTATTTCAGCTTAAAGGGCTCAAGGTTTTAGCTATTGACGATGAAGGTTGTACAAAGAGCGATGTTTTCAAAATGCTAGACAACCTGAATCCTCCTCCAACACTCCAAGAGCTGTATCTTAGGAATTACCTTCATAAAACTATGCCCAACAGGTTTAATCCCAGACTGCTTCCTGGAAACTTGGAGGTCTGTGTTTGTGTCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0042742 GO:0043207 GO:0043621 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

273

Amino Acids

31.02

Weight (kDa)

8.86

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	383
AciI	CCGC	1 cut(s)	367
AfaI	GTAC	3 cut(s)	44, 437, 664
AfiI	CCNNNNNNNGG	3 cut(s)	235, 241, 383
AflII	CTTAAG	1 cut(s)	527
AflIII	ACRYGT	1 cut(s)	326
AgsI	TTSAA	5 cut(s)	287, 354, 391, 473, 682
AjnI	CCWGG	5 cut(s)	209, 228, 234, 408, 784
AluBI	AGCT	7 cut(s)	56, 117, 257, 511, 622, 644, 724
AluI	AGCT	7 cut(s)	56, 117, 257, 511, 622, 644, 724
Ama87I	CYCGRG	1 cut(s)	444
AoxI	GGCC	3 cut(s)	3, 226, 304
AseI	ATTAAT	1 cut(s)	357
Asp700I	GAANNNNTTC	2 cut(s)	57, 460
AspS9I	GGNCC	3 cut(s)	226, 232, 412
AvaI	CYCGRG	1 cut(s)	444
AvaII	GGWCC	2 cut(s)	232, 412
BaeGI	GKGCMC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	633
BauI	CACGAG	1 cut(s)	814
BccI	CCATC	3 cut(s)	305, 355, 437
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BciT130I	CCWGG	5 cut(s)	211, 230, 236, 410, 786
BclI	TGATCA	1 cut(s)	402
BfaI	CTAG	3 cut(s)	416, 504, 689
BfrI	CTTAAG	1 cut(s)	527
BmcAI	AGTACT	1 cut(s)	437
Bme1390I	CCNGG	5 cut(s)	211, 230, 236, 410, 786
Bme18I	GGWCC	2 cut(s)	232, 412
BmeT110I	CYCGRG	1 cut(s)	444
BmgT120I	GGNCC	3 cut(s)	226, 232, 412
BmrFI	CCNGG	5 cut(s)	211, 230, 236, 410, 786
BmrI	ACTGGG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	266, 387
BmuI	ACTGGG	1 cut(s)	84
BpuEI	CTTGAG	2 cut(s)	159, 617
BsaAI	YACGTR	2 cut(s)	327, 569
BsaBI	GATNNNNATC	1 cut(s)	401
BsaJI	CCNNGG	3 cut(s)	209, 235, 443
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 241, 383
Bse1I	ACTGG	1 cut(s)	79
Bse8I	GATNNNNATC	1 cut(s)	401
BseBI	CCWGG	5 cut(s)	211, 230, 236, 410, 786
BseDI	CCNNGG	3 cut(s)	209, 235, 443
BseGI	GGATG	3 cut(s)	402, 405, 499
BseJI	GATNNNNATC	1 cut(s)	401
BseLI	CCNNNNNNNGG	3 cut(s)	235, 241, 383
BseMII	CTCAG	2 cut(s)	283, 606
BseNI	ACTGG	1 cut(s)	79
BseRI	GAGGAG	1 cut(s)	696
BseSI	GKGCMC	1 cut(s)	428
BsgI	GTGCAG	1 cut(s)	314
BshFI	GGCC	3 cut(s)	5, 228, 306
BsiHKCI	CYCGRG	1 cut(s)	444
BslI	CCNNNNNNNGG	3 cut(s)	235, 241, 383
BsnI	GGCC	3 cut(s)	5, 228, 306
BsoBI	CYCGRG	1 cut(s)	444
Bsp1286I	GDGCHC	2 cut(s)	428, 633
Bsp1407I	TGTACA	1 cut(s)	662
Bsp143I	GATC	1 cut(s)	402
BspACI	CCGC	1 cut(s)	367
BspANI	GGCC	3 cut(s)	5, 228, 306
BspCNI	CTCAG	2 cut(s)	282, 605
BspTI	CTTAAG	1 cut(s)	527
BsrGI	TGTACA	1 cut(s)	662
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	3 cut(s)	209, 235, 443
BssMI	GATC	1 cut(s)	402
BssSI	CACGAG	1 cut(s)	814
Bst2BI	CACGAG	1 cut(s)	814
Bst2UI	CCWGG	5 cut(s)	211, 230, 236, 410, 786
Bst4CI	ACNGT	2 cut(s)	12, 586
Bst6I	CTCTTC	1 cut(s)	528
BstAFI	CTTAAG	1 cut(s)	527
BstAUI	TGTACA	1 cut(s)	662
BstBAI	YACGTR	2 cut(s)	327, 569
BstDEI	CTNAG	3 cut(s)	269, 592, 731
BstENI	CCTNNNNNAGG	1 cut(s)	233
BstF5I	GGATG	3 cut(s)	402, 405, 499
BstKTI	GATC	1 cut(s)	405
BstMBI	GATC	1 cut(s)	402
BstMWI	GCNNNNNNNGC	1 cut(s)	628
BstNI	CCWGG	5 cut(s)	211, 230, 236, 410, 786
BstSCI	CCNGG	5 cut(s)	209, 228, 234, 408, 784
BstSLI	GKGCMC	1 cut(s)	428
BstSNI	TACGTA	1 cut(s)	569
BsuRI	GGCC	3 cut(s)	5, 228, 306
BtgZI	GCGATG	1 cut(s)	687
BtsCI	GGATG	3 cut(s)	402, 405, 499
BtsI	GCAGTG	2 cut(s)	145, 302
BtsIMutI	CAGTG	2 cut(s)	145, 302
Cfr13I	GGNCC	3 cut(s)	226, 232, 412
Csp6I	GTAC	3 cut(s)	43, 436, 663
CviQI	GTAC	3 cut(s)	43, 436, 663
DdeI	CTNAG	3 cut(s)	269, 592, 731
DpnI	GATC	1 cut(s)	404
DpnII	GATC	1 cut(s)	402
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Eco105I	TACGTA	1 cut(s)	569
Eco147I	AGGCCT	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	633
Eco47I	GGWCC	2 cut(s)	232, 412
Eco88I	CYCGRG	1 cut(s)	444
EcoNI	CCTNNNNNAGG	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	5 cut(s)	209, 228, 234, 408, 784
EcoT38I	GRGCYC	1 cut(s)	633
FbaI	TGATCA	1 cut(s)	402
FokI	GGATG	3 cut(s)	392, 409, 486
FriOI	GRGCYC	1 cut(s)	633
FspBI	CTAG	3 cut(s)	416, 504, 689
HaeIII	GGCC	3 cut(s)	5, 228, 306
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	6 cut(s)	89, 245, 318, 486, 496, 700
Hpy188I	TCNGA	2 cut(s)	37, 595
Hpy188III	TCNNGA	4 cut(s)	50, 176, 473, 816
HpyAV	CCTTC	4 cut(s)	144, 450, 650, 752
HpyCH4III	ACNGT	2 cut(s)	12, 586
HpyCH4IV	ACGT	2 cut(s)	326, 568
HpyCH4V	TGCA	2 cut(s)	295, 602
HpyF10VI	GCNNNNNNNGC	1 cut(s)	628
HpyF3I	CTNAG	3 cut(s)	269, 592, 731
HpySE526I	ACGT	2 cut(s)	326, 568
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	1 cut(s)	402
LweI	GCATC	2 cut(s)	266, 387
MaeI	CTAG	3 cut(s)	416, 504, 689
MaeII	ACGT	2 cut(s)	326, 568
MalI	GATC	1 cut(s)	404
MboI	GATC	1 cut(s)	402
MboII	GAAGA	3 cut(s)	342, 461, 515
MhlI	GDGCHC	2 cut(s)	428, 633
MluCI	AATT	4 cut(s)	199, 288, 354, 736
MlyI	GAGTC	3 cut(s)	239, 327, 505
MmeI	TCCRAC	1 cut(s)	734
MroXI	GAANNNNTTC	2 cut(s)	57, 460
MseI	TTAA	7 cut(s)	203, 357, 452, 528, 534, 624, 768
MspCI	CTTAAG	1 cut(s)	527
MspR9I	CCNGG	5 cut(s)	211, 230, 236, 410, 786
MvaI	CCWGG	5 cut(s)	211, 230, 236, 410, 786
MwoI	GCNNNNNNNGC	1 cut(s)	628
NdeII	GATC	1 cut(s)	402
PceI	AGGCCT	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	565
PdmI	GAANNNNTTC	2 cut(s)	57, 460
PfeI	GAWTC	3 cut(s)	89, 486, 700
PflMI	CCANNNNNTGG	1 cut(s)	383
PfoI	TCCNGGA	2 cut(s)	408, 784
PleI	GAGTC	3 cut(s)	239, 326, 504
PpsI	GAGTC	3 cut(s)	239, 326, 504
Ppu21I	YACGTR	2 cut(s)	327, 569
PshBI	ATTAAT	1 cut(s)	357
Psp6I	CCWGG	5 cut(s)	209, 228, 234, 408, 784
PspGI	CCWGG	5 cut(s)	209, 228, 234, 408, 784
PspPI	GGNCC	3 cut(s)	226, 232, 412
PsrI	GAACNNNNNNTAC	2 cut(s)	549, 581
RsaI	GTAC	3 cut(s)	44, 437, 664
RsaNI	GTAC	3 cut(s)	43, 436, 663
SaqAI	TTAA	7 cut(s)	203, 357, 452, 528, 534, 624, 768
Sau3AI	GATC	1 cut(s)	402
Sau96I	GGNCC	3 cut(s)	226, 232, 412
ScaI	AGTACT	1 cut(s)	437
SchI	GAGTC	3 cut(s)	239, 327, 505
ScrFI	CCNGG	5 cut(s)	211, 230, 236, 410, 786
SduI	GDGCHC	2 cut(s)	428, 633
SfaNI	GCATC	2 cut(s)	266, 387
SinI	GGWCC	2 cut(s)	232, 412
SmlI	CTYRAG	3 cut(s)	174, 527, 632
SmoI	CTYRAG	3 cut(s)	174, 527, 632
SnaBI	TACGTA	1 cut(s)	569
Sse9I	AATT	4 cut(s)	199, 288, 354, 736
SseBI	AGGCCT	1 cut(s)	306
SsiI	CCGC	1 cut(s)	367
SspMI	CTAG	3 cut(s)	416, 504, 689
StuI	AGGCCT	1 cut(s)	306
StyD4I	CCNGG	5 cut(s)	209, 228, 234, 408, 784
TaaI	ACNGT	2 cut(s)	12, 586
TaiI	ACGT	2 cut(s)	329, 571
TaqI	TCGA	1 cut(s)	301
TasI	AATT	4 cut(s)	199, 288, 354, 736
TatI	WGTACW	2 cut(s)	435, 662
TfiI	GAWTC	3 cut(s)	89, 486, 700
Tru1I	TTAA	7 cut(s)	203, 357, 452, 528, 534, 624, 768
Tru9I	TTAA	7 cut(s)	203, 357, 452, 528, 534, 624, 768
TscAI	CASTG	2 cut(s)	152, 302
TspDTI	ATGAA	4 cut(s)	50, 138, 669, 734
TspRI	CASTG	2 cut(s)	152, 302
Van91I	CCANNNNNTGG	1 cut(s)	383
Vha464I	CTTAAG	1 cut(s)	527
VpaK11BI	GGWCC	2 cut(s)	232, 412
VspI	ATTAAT	1 cut(s)	357
XagI	CCTNNNNNAGG	1 cut(s)	233
XmnI	GAANNNNTTC	2 cut(s)	57, 460
XspI	CTAG	3 cut(s)	416, 504, 689
ZrmI	AGTACT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.