Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19853587 .. 19855434

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G182800.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGCTTCAGTTTAAGTACCCTGTTACTTTCTTCAGCTGCAAGGGAAAGGAAACTCGCCAAGCTCCAAATTTGACTGGAAGCCCCTTCCTATACTCGGAGACATACAATATTTTCACAGCTGTGACTTGCGGTCACCTTGCCACTGTGAGATCAGAAAAGCATGTTTTTCACGGATGCGAATCAACTTGTGATTGGAGTACAAACAATACTAATCGCTGTGATACCAAAATCCAGACTAACATTCCTCCAAATCTCAGTGTTTTCACTACTGAAACACAAGGAAGATATCAAAATGGTGGTTGCGGCTATGCATTTCTTGTTGACCAAGATTGGTTTGTGAACAATTTATCAAGTTATAGAGCTATCCAGGGCATGGACAGCGTACCTGTGGTGCTAGATTGGAAGATCAGCTTAGATAATACTTCACTCAGATCCTTTAAAGGATTTATTGGAACAGAGCCAGATTATTATGATTTTGAACGGAACTATATTATTGACTCAACACCCTATTGTGAAATATACAATTCCACTACTTCTTCCACATACAATCAGTCAAGCCTTCACTGTTTCTGTCCGGCGGGCTTTGAAGGAAATCCTTATCTTCTCCACCCTTATCAAGAGGAGTTGGAGAAGTCCACTGACAAATACAACACTGATAGAATTCTTGGTCAGGGAGGCCAAGGTACCGTCTACAAAGGAATGTTCGCAGATGGAAGAATCATTGCGGTAAAGAAGTCCAACATACTGGATGAAGGCCAACTTTCAGAATTCATCAATGAGGTTGTGATTCTTTCACAAATCAATCACAGAAATGTGGTTCGATCATTAGGTTGTTGTTTAGAGACTGAAGTTCCACTCTTGGTTTACGAAGTCATACCGAATGGAACCCTTTCCCATTATATTCATAAGCAGAATGAAGACTTTCCACTTACATGGAAAATGCGGTTACGAATTGCCACAGAAATTGCAGGAGCTCTATCTTACTTGCATGGTGCAGCTTCCTTTCCTATTTATAGAGACATCAAGTCTGTTGGGAAAGATTGCGAAATTAAAGAGCCAATAAATAAATATGGCACTTCCAGGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

363

Amino Acids

40.99

Weight (kDa)

5.88

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	683
AccB1I	GGYRCC	1 cut(s)	683
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccI	GTMKAC	1 cut(s)	690
AciI	CCGC	5 cut(s)	129, 303, 578, 725, 943
AclWI	GGATC	1 cut(s)	426
AcsI	RAATTY	3 cut(s)	67, 660, 767
AcuI	CTGAAG	2 cut(s)	16, 867
AfaI	GTAC	4 cut(s)	17, 199, 384, 685
AfiI	CCNNNNNNNGG	2 cut(s)	94, 373
AgsI	TTSAA	2 cut(s)	479, 587
AhdI	GACNNNNNGTC	2 cut(s)	129, 1024
AjnI	CCWGG	2 cut(s)	366, 1079
AleI	CACNNNNGTG	1 cut(s)	119
AluBI	AGCT	7 cut(s)	36, 62, 119, 362, 411, 974, 998
AluI	AGCT	7 cut(s)	36, 62, 119, 362, 411, 974, 998
Alw21I	GWGCWC	1 cut(s)	976
Alw26I	GTCTC	3 cut(s)	92, 836, 1011
AlwI	GGATC	1 cut(s)	426
AlwNI	CAGNNNCTG	1 cut(s)	1086
AoxI	GGCC	2 cut(s)	676, 754
ApeKI	GCWGC	2 cut(s)	36, 995
ApoI	RAATTY	3 cut(s)	67, 660, 767
Asp700I	GAANNNNTTC	2 cut(s)	889, 921
Asp718I	GGTACC	1 cut(s)	683
AsuHPI	GGTGA	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	683
BanII	GRGCYC	1 cut(s)	976
BbsI	GAAGAC	1 cut(s)	924
Bbv12I	GWGCWC	1 cut(s)	976
BbvI	GCAGC	2 cut(s)	23, 1007
BccI	CCATC	1 cut(s)	704
BciT130I	CCWGG	2 cut(s)	368, 1081
BcoDI	GTCTC	3 cut(s)	92, 836, 1011
BfaI	CTAG	1 cut(s)	395
BisI	GCNGC	3 cut(s)	37, 304, 996
BlsI	GCNGC	3 cut(s)	38, 305, 997
Bme1390I	CCNGG	2 cut(s)	368, 1081
BmeRI	GACNNNNNGTC	2 cut(s)	129, 1024
BmiI	GGNNCC	2 cut(s)	685, 886
BmrFI	CCNGG	2 cut(s)	368, 1081
BmsI	GCATC	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	924
BsaBI	GATNNNNATC	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	367, 679
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 373
Bse1I	ACTGG	2 cut(s)	79, 750
Bse3DI	GCAATG	1 cut(s)	720
Bse8I	GATNNNNATC	1 cut(s)	178
BseBI	CCWGG	2 cut(s)	368, 1081
BseDI	CCNNGG	2 cut(s)	367, 679
BseGI	GGATG	2 cut(s)	179, 754
BseJI	GATNNNNATC	1 cut(s)	178
BseLI	CCNNNNNNNGG	2 cut(s)	94, 373
BseMI	GCAATG	1 cut(s)	720
BseMII	CTCAG	2 cut(s)	268, 442
BseNI	ACTGG	2 cut(s)	79, 750
BseRI	GAGGAG	1 cut(s)	635
BseXI	GCAGC	2 cut(s)	23, 1007
BsgI	GTGCAG	1 cut(s)	1014
BshFI	GGCC	2 cut(s)	678, 756
BshNI	GGYRCC	1 cut(s)	683
BsiHKAI	GWGCWC	1 cut(s)	976
BsiSI	CCGG	1 cut(s)	575
BslI	CCNNNNNNNGG	2 cut(s)	94, 373
BsmAI	GTCTC	3 cut(s)	92, 836, 1011
BsnI	GGCC	2 cut(s)	678, 756
Bsp1286I	GDGCHC	1 cut(s)	976
Bsp143I	GATC	5 cut(s)	149, 405, 431, 821, 1083
BspACI	CCGC	5 cut(s)	129, 303, 578, 725, 943
BspANI	GGCC	2 cut(s)	678, 756
BspCNI	CTCAG	2 cut(s)	267, 441
BspLI	GGNNCC	2 cut(s)	685, 886
BspPI	GGATC	1 cut(s)	426
BspT107I	GGYRCC	1 cut(s)	683
BsrDI	GCAATG	1 cut(s)	720
BsrI	ACTGG	2 cut(s)	79, 750
BssECI	CCNNGG	2 cut(s)	367, 679
BssMI	GATC	5 cut(s)	149, 405, 431, 821, 1083
BssT1I	CCWWGG	1 cut(s)	679
Bst2UI	CCWGG	2 cut(s)	368, 1081
Bst4CI	ACNGT	3 cut(s)	145, 566, 688
BstC8I	GCNNGC	1 cut(s)	580
BstDEI	CTNAG	3 cut(s)	254, 412, 428
BstEII	GGTNACC	1 cut(s)	131
BstF5I	GGATG	2 cut(s)	179, 754
BstKTI	GATC	5 cut(s)	152, 408, 434, 824, 1086
BstMAI	GTCTC	3 cut(s)	92, 836, 1011
BstMBI	GATC	5 cut(s)	149, 405, 431, 821, 1083
BstMWI	GCNNNNNNNGC	1 cut(s)	378
BstNI	CCWGG	2 cut(s)	368, 1081
BstNSI	RCATGY	1 cut(s)	164
BstPI	GGTNACC	1 cut(s)	131
BstSCI	CCNGG	2 cut(s)	366, 1079
BstV1I	GCAGC	2 cut(s)	23, 1007
BstV2I	GAAGAC	1 cut(s)	924
BstX2I	RGATCY	2 cut(s)	431, 1083
BstXI	CCANNNNNNTGG	2 cut(s)	745, 933
BstYI	RGATCY	2 cut(s)	431, 1083
BsuRI	GGCC	2 cut(s)	678, 756
BtsCI	GGATG	2 cut(s)	179, 754
BtsIMutI	CAGTG	5 cut(s)	141, 262, 562, 636, 651
Cac8I	GCNNGC	1 cut(s)	580
CaiI	CAGNNNCTG	1 cut(s)	1086
Csp6I	GTAC	4 cut(s)	16, 198, 383, 684
CspCI	CAANNNNNGTGG	2 cut(s)	946, 981
CviAII	CATG	4 cut(s)	161, 373, 933, 989
CviQI	GTAC	4 cut(s)	16, 198, 383, 684
DdeI	CTNAG	3 cut(s)	254, 412, 428
DpnI	GATC	5 cut(s)	151, 407, 433, 823, 1085
DpnII	GATC	5 cut(s)	149, 405, 431, 821, 1083
DraI	TTTAAA	1 cut(s)	439
DriI	GACNNNNNGTC	2 cut(s)	129, 1024
Eam1105I	GACNNNNNGTC	2 cut(s)	129, 1024
Ecl136II	GAGCTC	1 cut(s)	974
Eco130I	CCWWGG	1 cut(s)	679
Eco24I	GRGCYC	1 cut(s)	976
Eco32I	GATATC	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	974
Eco57I	CTGAAG	2 cut(s)	16, 867
Eco91I	GGTNACC	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	974
EcoO65I	GGTNACC	1 cut(s)	131
EcoRI	GAATTC	2 cut(s)	660, 767
EcoRII	CCWGG	2 cut(s)	366, 1079
EcoRV	GATATC	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	679
EcoT22I	ATGCAT	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	976
ErhI	CCWWGG	1 cut(s)	679
FaeI	CATG	4 cut(s)	164, 376, 936, 992
FalI	AAGNNNNNCTT	4 cut(s)	395, 427, 744, 776
FatI	CATG	4 cut(s)	160, 372, 932, 988
FauI	CCCGC	1 cut(s)	571
FblI	GTMKAC	1 cut(s)	690
Fnu4HI	GCNGC	3 cut(s)	37, 304, 996
FokI	GGATG	2 cut(s)	186, 761
FriOI	GRGCYC	1 cut(s)	976
Fsp4HI	GCNGC	3 cut(s)	37, 304, 996
FspBI	CTAG	1 cut(s)	395
GluI	GCNGC	3 cut(s)	37, 304, 996
HaeIII	GGCC	2 cut(s)	678, 756
HapII	CCGG	1 cut(s)	575
Hin1II	CATG	4 cut(s)	164, 376, 936, 992
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	4 cut(s)	179, 497, 717, 787
HpaII	CCGG	1 cut(s)	575
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	5 cut(s)	322, 340, 636, 691, 865
Hpy188I	TCNGA	5 cut(s)	97, 154, 431, 766, 1088
Hpy188III	TCNNGA	2 cut(s)	232, 617
Hpy8I	GTNNAC	5 cut(s)	322, 340, 636, 691, 865
HpyAV	CCTTC	4 cut(s)	94, 569, 581, 746
HpyCH4III	ACNGT	3 cut(s)	145, 566, 688
HpyCH4V	TGCA	5 cut(s)	39, 311, 968, 988, 995
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
HpyF3I	CTNAG	3 cut(s)	254, 412, 428
Hsp92II	CATG	4 cut(s)	164, 376, 936, 992
KpnI	GGTACC	1 cut(s)	687
Kzo9I	GATC	5 cut(s)	149, 405, 431, 821, 1083
LmnI	GCTCC	2 cut(s)	67, 971
Lsp1109I	GCAGC	2 cut(s)	23, 1007
LweI	GCATC	1 cut(s)	164
MaeI	CTAG	1 cut(s)	395
MaeIII	GTNAC	4 cut(s)	22, 121, 131, 945
MalI	GATC	5 cut(s)	151, 407, 433, 823, 1085
MboI	GATC	5 cut(s)	149, 405, 431, 821, 1083
MboII	GAAGA	7 cut(s)	22, 294, 415, 528, 593, 726, 929
MflI	RGATCY	2 cut(s)	431, 1083
MhlI	GDGCHC	1 cut(s)	976
MluCI	AATT	8 cut(s)	67, 343, 523, 660, 767, 951, 963, 1047
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	2 cut(s)	606, 762
MnlI	CCTC	4 cut(s)	255, 613, 668, 772
Mph1103I	ATGCAT	1 cut(s)	313
MroXI	GAANNNNTTC	2 cut(s)	889, 921
MseI	TTAA	3 cut(s)	12, 438, 1050
MslI	CAYNNNNRTG	3 cut(s)	119, 810, 931
MspA1I	CMGCKG	2 cut(s)	36, 119
MspI	CCGG	1 cut(s)	575
MspR9I	CCNGG	2 cut(s)	368, 1081
MvaI	CCWGG	2 cut(s)	368, 1081
MwoI	GCNNNNNNNGC	1 cut(s)	378
NdeII	GATC	5 cut(s)	149, 405, 431, 821, 1083
NlaIII	CATG	4 cut(s)	164, 376, 936, 992
NlaIV	GGNNCC	2 cut(s)	685, 886
NmuCI	GTSAC	2 cut(s)	121, 131
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	1 cut(s)	164
OliI	CACNNNNGTG	1 cut(s)	119
PdmI	GAANNNNTTC	2 cut(s)	889, 921
PfeI	GAWTC	3 cut(s)	179, 717, 787
PflMI	CCANNNNNTGG	1 cut(s)	373
PfoI	TCCNGGA	1 cut(s)	1079
PkrI	GCNGC	3 cut(s)	38, 305, 997
PleI	GAGTC	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	491
Psp124BI	GAGCTC	1 cut(s)	976
Psp6I	CCWGG	2 cut(s)	366, 1079
PspEI	GGTNACC	1 cut(s)	131
PspGI	CCWGG	2 cut(s)	366, 1079
PspN4I	GGNNCC	2 cut(s)	685, 886
PstNI	CAGNNNCTG	1 cut(s)	1086
PsuI	RGATCY	2 cut(s)	431, 1083
PvuII	CAGCTG	2 cut(s)	36, 119
RsaI	GTAC	4 cut(s)	17, 199, 384, 685
RsaNI	GTAC	4 cut(s)	16, 198, 383, 684
RseI	CAYNNNNRTG	3 cut(s)	119, 810, 931
SacI	GAGCTC	1 cut(s)	976
SaqAI	TTAA	3 cut(s)	12, 438, 1050
SatI	GCNGC	3 cut(s)	37, 304, 996
Sau3AI	GATC	5 cut(s)	149, 405, 431, 821, 1083
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	2 cut(s)	368, 1081
SduI	GDGCHC	1 cut(s)	976
SfaNI	GCATC	1 cut(s)	164
SmiMI	CAYNNNNRTG	3 cut(s)	119, 810, 931
Sse9I	AATT	8 cut(s)	67, 343, 523, 660, 767, 951, 963, 1047
SsiI	CCGC	5 cut(s)	129, 303, 578, 725, 943
SspI	AATATT	1 cut(s)	109
SspMI	CTAG	1 cut(s)	395
SstI	GAGCTC	1 cut(s)	976
StyD4I	CCNGG	2 cut(s)	366, 1079
StyI	CCWWGG	1 cut(s)	679
TaaI	ACNGT	3 cut(s)	145, 566, 688
TaqI	TCGA	1 cut(s)	820
TasI	AATT	8 cut(s)	67, 343, 523, 660, 767, 951, 963, 1047
TatI	WGTACW	1 cut(s)	197
TauI	GCSGC	1 cut(s)	306
TfiI	GAWTC	3 cut(s)	179, 717, 787
Tru1I	TTAA	3 cut(s)	12, 438, 1050
Tru9I	TTAA	3 cut(s)	12, 438, 1050
TscAI	CASTG	5 cut(s)	148, 262, 569, 643, 658
TseFI	GTSAC	2 cut(s)	121, 131
TseI	GCWGC	2 cut(s)	36, 995
Tsp45I	GTSAC	2 cut(s)	121, 131
TspDTI	ATGAA	4 cut(s)	760, 765, 893, 930
TspGWI	ACGGA	2 cut(s)	186, 496
TspRI	CASTG	5 cut(s)	148, 262, 569, 643, 658
Van91I	CCANNNNNTGG	1 cut(s)	373
XapI	RAATTY	3 cut(s)	67, 660, 767
XceI	RCATGY	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	690
XmnI	GAANNNNTTC	2 cut(s)	889, 921
XspI	CTAG	1 cut(s)	395
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.