Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20003909 .. 20009346

Gene Structure 5438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G185400.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGAGGAAACTTGTGTTCATCCCAGCCCGAGGCATCGAGCATCTCGTATCAACAGTTGAGATCGCAAAGCAACTCACGGCTGGAGATCACCAGCTCTTCATCACAGTCTTCATCATGAAGCTCCCATTCAACCAACTCTTCATCAACCTCCCCAAAGCCCACGTCGACACACGAAACACCAACCCCTCCTCGTTCTTCAAAACCTTCATCGAAAATCACAAAACCCATGCCAGAGACGCTGTCTCCGAGTCAACTCAGTCCGAGTCGAACCAAGCTCGGCTGGTCGGGCTGGTCATTAACATGTTCTACACCACTATGATTGATGTGGCCGATGAATTTAGGGTTCCTTCCTACATGTTCTTCACCTCAAACTTTAGGTGTCTCGCGTTCTTGCTCCACCTCCGCACGCTTCAAGACGAGAATGGCATAGACGCTGCCTCGTTGATGGACTCAAAGGATAGGTTTAGAGAAATCAAGGGTATTTTAGTAAATATGTCCTCAAAGCTGGAATCACATGCGCTTCAATCTCTTTCTGATGGTAAAACCCTACCTGTGTACCCAGTGGGACCTCTGTTGAATCTCGAGAGTGATGATTTCCACGTGGGTTCAAACATGGCAAGACAAAAGTATGATGATCAGCTTTCCTTGTCTGTGAGAGCGTATGCACTGGAGCACAGTAGGCTTCGGTTCTTGTGGTCCTTACGAAAGCCCCTGCCAAAGGGCGAGATTGCCATGCCAAGTGACTATGCGGATCCCACGGGAGTCTTGCCTGAAGGGTTTCTGGATCGAACGGCTGAGATTGGGAGAGTCATAGGGTGGGCCCCACAAGTGGCTATACTGGCCCACCCTACAATCGGAGGGTTTGTATCGCATTGCGGGTGGAACTCCATGCTGGAGAAGCAACAATTAAATACTTTTGAACTGGTGAAGGAATTGGGATTGGCAGTGGAAATTAAGATGGATTATAGGAAGGGAAGTGAAGTGGTGGTGAGTGCAGAGGAGATAGGGAGAGGGATAAGGGAAGTGATGGAGAAGGACAGTGATATCAGAGAGAGGGTGAAGGAGATGAGTGTAAAGAGCAAGAAAGCCTTGGTGGATGGTGGTTCCTCTCACTCTTCATTGGGGTGTTTTATTGATCAAATTCAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

384

Amino Acids

43.05

Weight (kDa)

6.47

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	1 cut(s)	386
AciI	CCGC	3 cut(s)	403, 749, 876
AclWI	GGATC	3 cut(s)	746, 759, 792
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	2 cut(s)	335, 1140
AcuI	CTGAAG	1 cut(s)	792
AcvI	CACGTG	1 cut(s)	601
AfaI	GTAC	1 cut(s)	557
AfiI	CCNNNNNNNGG	4 cut(s)	29, 718, 829, 854
AflIII	ACRYGT	2 cut(s)	300, 354
AgsI	TTSAA	8 cut(s)	130, 199, 413, 524, 577, 609, 920, 1145
AjiI	CACGTC	1 cut(s)	163
AluBI	AGCT	5 cut(s)	94, 121, 275, 505, 640
AluI	AGCT	5 cut(s)	94, 121, 275, 505, 640
Alw21I	GWGCWC	1 cut(s)	675
Alw26I	GTCTC	3 cut(s)	228, 247, 386
AlwI	GGATC	3 cut(s)	746, 759, 792
Ama87I	CYCGRG	2 cut(s)	27, 581
AoxI	GGCC	3 cut(s)	327, 819, 840
ApaI	GGGCCC	1 cut(s)	823
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	2 cut(s)	335, 1140
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
Asp700I	GAANNNNTTC	1 cut(s)	777
AspLEI	GCGC	1 cut(s)	520
AspS9I	GGNCC	5 cut(s)	566, 696, 819, 820, 841
AsuHPI	GGTGA	5 cut(s)	80, 355, 937, 1000, 1069
AvaI	CYCGRG	2 cut(s)	27, 581
AvaII	GGWCC	2 cut(s)	566, 696
BaeGI	GKGCMC	1 cut(s)	823
BaeI	ACNNNNGTAYC	2 cut(s)	539, 572
BamHI	GGATCC	1 cut(s)	751
BanII	GRGCYC	1 cut(s)	823
BbrPI	CACGTG	1 cut(s)	601
BbsI	GAAGAC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	675
BbvI	GCAGC	1 cut(s)	421
BccI	CCATC	5 cut(s)	439, 530, 952, 1021, 1091
BceAI	ACGGC	2 cut(s)	93, 807
BclI	TGATCA	2 cut(s)	634, 1135
BcoDI	GTCTC	3 cut(s)	228, 247, 386
BisI	GCNGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	436
Bme18I	GGWCC	2 cut(s)	566, 696
BmeT110I	CYCGRG	2 cut(s)	27, 581
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	5 cut(s)	566, 696, 819, 820, 841
BmiI	GGNNCC	6 cut(s)	345, 567, 753, 821, 822, 1105
BmrI	ACTGGG	1 cut(s)	554
BmsI	GCATC	2 cut(s)	42, 49
BmuI	ACTGGG	1 cut(s)	554
BpiI	GAAGAC	1 cut(s)	100
BpmI	CTGGAG	3 cut(s)	102, 689, 914
BsaAI	YACGTR	1 cut(s)	601
BsaJI	CCNNGG	3 cut(s)	28, 756, 1089
BsaXI	ACNNNNNCTCC	4 cut(s)	227, 257, 849, 879
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 718, 829, 854
Bse1I	ACTGG	4 cut(s)	560, 672, 843, 927
Bse3DI	GCAATG	1 cut(s)	871
BseDI	CCNNGG	3 cut(s)	28, 756, 1089
BseGI	GGATG	2 cut(s)	18, 1102
BseLI	CCNNNNNNNGG	4 cut(s)	29, 718, 829, 854
BseMI	GCAATG	1 cut(s)	871
BseMII	CTCAG	2 cut(s)	269, 786
BseNI	ACTGG	4 cut(s)	560, 672, 843, 927
BseRI	GAGGAG	2 cut(s)	178, 1013
BseSI	GKGCMC	1 cut(s)	823
BseXI	GCAGC	1 cut(s)	421
BseYI	CCCAGC	1 cut(s)	22
BsgI	GTGCAG	1 cut(s)	1014
Bsh1236I	CGCG	1 cut(s)	386
BshFI	GGCC	3 cut(s)	329, 821, 842
BsiHKAI	GWGCWC	1 cut(s)	675
BsiHKCI	CYCGRG	2 cut(s)	27, 581
BslFI	GGGAC	1 cut(s)	579
BslI	CCNNNNNNNGG	4 cut(s)	29, 718, 829, 854
BsmAI	GTCTC	3 cut(s)	228, 247, 386
BsmBI	CGTCTC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	579
BsnI	GGCC	3 cut(s)	329, 821, 842
BsoBI	CYCGRG	2 cut(s)	27, 581
Bsp120I	GGGCCC	1 cut(s)	819
Bsp1286I	GDGCHC	2 cut(s)	675, 823
Bsp143I	GATC	6 cut(s)	60, 85, 634, 751, 784, 1135
BspACI	CCGC	3 cut(s)	403, 749, 876
BspANI	GGCC	3 cut(s)	329, 821, 842
BspCNI	CTCAG	2 cut(s)	268, 787
BspFNI	CGCG	1 cut(s)	386
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	6 cut(s)	345, 567, 753, 821, 822, 1105
BspPI	GGATC	3 cut(s)	746, 759, 792
BspQI	GCTCTTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	871
BsrI	ACTGG	4 cut(s)	560, 672, 843, 927
BssECI	CCNNGG	3 cut(s)	28, 756, 1089
BssMI	GATC	6 cut(s)	60, 85, 634, 751, 784, 1135
BssT1I	CCWWGG	1 cut(s)	1089
Bst4CI	ACNGT	4 cut(s)	55, 106, 677, 1040
Bst6I	CTCTTC	3 cut(s)	101, 143, 1120
BstBAI	YACGTR	1 cut(s)	601
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	2 cut(s)	255, 795
BstDSI	CCRYGG	1 cut(s)	756
BstENI	CCTNNNNNAGG	1 cut(s)	716
BstF5I	GGATG	2 cut(s)	18, 1102
BstFNI	CGCG	1 cut(s)	386
BstHHI	GCGC	1 cut(s)	520
BstKTI	GATC	6 cut(s)	63, 88, 637, 754, 787, 1138
BstMAI	GTCTC	3 cut(s)	228, 247, 386
BstMBI	GATC	6 cut(s)	60, 85, 634, 751, 784, 1135
BstMWI	GCNNNNNNNGC	5 cut(s)	236, 286, 679, 839, 898
BstNSI	RCATGY	3 cut(s)	304, 358, 518
BstSLI	GKGCMC	1 cut(s)	823
BstUI	CGCG	1 cut(s)	386
BstV1I	GCAGC	1 cut(s)	421
BstV2I	GAAGAC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	751
BstYI	RGATCY	1 cut(s)	751
BsuRI	GGCC	3 cut(s)	329, 821, 842
BtgI	CCRYGG	1 cut(s)	756
BtrI	CACGTC	1 cut(s)	163
BtsCI	GGATG	2 cut(s)	18, 1102
BtsI	GCAGTG	1 cut(s)	951
BtsIMutI	CAGTG	4 cut(s)	567, 665, 951, 1045
Cac8I	GCNNGC	1 cut(s)	407
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	1 cut(s)	520
Cfr13I	GGNCC	5 cut(s)	566, 696, 819, 820, 841
CseI	GACGC	2 cut(s)	245, 440
Csp6I	GTAC	1 cut(s)	556
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	8 cut(s)	115, 227, 301, 355, 515, 613, 733, 889
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	2 cut(s)	255, 795
DpnI	GATC	6 cut(s)	62, 87, 636, 753, 786, 1137
DpnII	GATC	6 cut(s)	60, 85, 634, 751, 784, 1135
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	3 cut(s)	101, 143, 1120
EarI	CTCTTC	3 cut(s)	101, 143, 1120
Eco130I	CCWWGG	1 cut(s)	1089
Eco24I	GRGCYC	1 cut(s)	823
Eco32I	GATATC	1 cut(s)	1045
Eco47I	GGWCC	2 cut(s)	566, 696
Eco57I	CTGAAG	1 cut(s)	792
Eco72I	CACGTG	1 cut(s)	601
Eco88I	CYCGRG	2 cut(s)	27, 581
EcoNI	CCTNNNNNAGG	1 cut(s)	716
EcoO109I	RGGNCCY	2 cut(s)	566, 820
EcoRV	GATATC	1 cut(s)	1045
EcoT14I	CCWWGG	1 cut(s)	1089
EcoT38I	GRGCYC	1 cut(s)	823
ErhI	CCWWGG	1 cut(s)	1089
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	8 cut(s)	118, 230, 304, 358, 518, 616, 736, 892
FalI	AAGNNNNNCTT	2 cut(s)	1073, 1105
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	8 cut(s)	114, 226, 300, 354, 514, 612, 732, 888
FauI	CCCGC	1 cut(s)	869
FbaI	TGATCA	2 cut(s)	634, 1135
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	435
FokI	GGATG	2 cut(s)	5, 1109
FriOI	GRGCYC	1 cut(s)	823
Fsp4HI	GCNGC	1 cut(s)	435
GlaI	GCGC	1 cut(s)	519
GluI	GCNGC	1 cut(s)	435
GsaI	CCCAGC	1 cut(s)	26
GsuI	CTGGAG	3 cut(s)	102, 689, 914
HaeIII	GGCC	3 cut(s)	329, 821, 842
HgaI	GACGC	2 cut(s)	245, 440
HhaI	GCGC	1 cut(s)	520
Hin1II	CATG	8 cut(s)	118, 230, 304, 358, 518, 616, 736, 892
Hin6I	GCGC	1 cut(s)	518
HinP1I	GCGC	1 cut(s)	518
HincII	GTYRAC	2 cut(s)	166, 252
HindII	GTYRAC	2 cut(s)	166, 252
HinfI	GANTC	7 cut(s)	248, 263, 449, 509, 577, 762, 807
HphI	GGTGA	5 cut(s)	80, 355, 937, 1000, 1069
Hpy166II	GTNNAC	3 cut(s)	166, 252, 556
Hpy188I	TCNGA	5 cut(s)	247, 262, 535, 857, 1049
Hpy188III	TCNNGA	5 cut(s)	115, 413, 581, 583, 782
Hpy8I	GTNNAC	3 cut(s)	166, 252, 556
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	7 cut(s)	214, 357, 767, 922, 964, 1027, 1054
HpyCH4III	ACNGT	4 cut(s)	55, 106, 677, 1040
HpyCH4IV	ACGT	2 cut(s)	162, 600
HpyCH4V	TGCA	2 cut(s)	665, 995
HpyF10VI	GCNNNNNNNGC	5 cut(s)	236, 286, 679, 839, 898
HpyF3I	CTNAG	2 cut(s)	255, 795
HpySE526I	ACGT	2 cut(s)	162, 600
Hsp92II	CATG	8 cut(s)	118, 230, 304, 358, 518, 616, 736, 892
HspAI	GCGC	1 cut(s)	518
Ksp22I	TGATCA	2 cut(s)	634, 1135
Kzo9I	GATC	6 cut(s)	60, 85, 634, 751, 784, 1135
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	3 cut(s)	126, 399, 670
Lsp1109I	GCAGC	1 cut(s)	421
LweI	GCATC	2 cut(s)	42, 49
MaeII	ACGT	2 cut(s)	162, 600
MaeIII	GTNAC	1 cut(s)	740
MalI	GATC	6 cut(s)	62, 87, 636, 753, 786, 1137
MboI	GATC	6 cut(s)	60, 85, 634, 751, 784, 1135
MboII	GAAGA	6 cut(s)	88, 100, 130, 187, 352, 1107
MflI	RGATCY	1 cut(s)	751
MhlI	GDGCHC	2 cut(s)	675, 823
MluCI	AATT	5 cut(s)	335, 905, 932, 951, 1140
MlyI	GAGTC	5 cut(s)	257, 272, 443, 771, 816
MroXI	GAANNNNTTC	1 cut(s)	777
MseI	TTAA	3 cut(s)	297, 908, 954
MslI	CAYNNNNRTG	3 cut(s)	299, 314, 1123
MvnI	CGCG	1 cut(s)	386
MwoI	GCNNNNNNNGC	5 cut(s)	236, 286, 679, 839, 898
NdeII	GATC	6 cut(s)	60, 85, 634, 751, 784, 1135
NlaIII	CATG	8 cut(s)	118, 230, 304, 358, 518, 616, 736, 892
NlaIV	GGNNCC	6 cut(s)	345, 567, 753, 821, 822, 1105
NmeAIII	GCCGAG	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	740
NspI	RCATGY	3 cut(s)	304, 358, 518
PaeR7I	CTCGAG	1 cut(s)	581
PagI	TCATGA	1 cut(s)	114
PciI	ACATGT	2 cut(s)	300, 354
PciSI	GCTCTTC	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 243
PdmI	GAANNNNTTC	1 cut(s)	777
PfeI	GAWTC	2 cut(s)	509, 577
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	436
PleI	GAGTC	5 cut(s)	256, 271, 443, 770, 815
PmaCI	CACGTG	1 cut(s)	601
PmlI	CACGTG	1 cut(s)	601
PpsI	GAGTC	5 cut(s)	256, 271, 443, 770, 815
Ppu21I	YACGTR	1 cut(s)	601
PpuMI	RGGWCCY	1 cut(s)	566
PscI	ACATGT	2 cut(s)	300, 354
Psp5II	RGGWCCY	1 cut(s)	566
PspCI	CACGTG	1 cut(s)	601
PspFI	CCCAGC	1 cut(s)	22
PspN4I	GGNNCC	6 cut(s)	345, 567, 753, 821, 822, 1105
PspOMI	GGGCCC	1 cut(s)	819
PspPI	GGNCC	5 cut(s)	566, 696, 819, 820, 841
PspPPI	RGGWCCY	1 cut(s)	566
PsuI	RGATCY	1 cut(s)	751
PsyI	GACNNNGTC	1 cut(s)	239
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
RseI	CAYNNNNRTG	3 cut(s)	299, 314, 1123
SalI	GTCGAC	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	3 cut(s)	297, 908, 954
SatI	GCNGC	1 cut(s)	435
Sau3AI	GATC	6 cut(s)	60, 85, 634, 751, 784, 1135
Sau96I	GGNCC	5 cut(s)	566, 696, 819, 820, 841
SchI	GAGTC	5 cut(s)	257, 272, 443, 771, 816
SduI	GDGCHC	2 cut(s)	675, 823
SfaNI	GCATC	2 cut(s)	42, 49
Sfr274I	CTCGAG	1 cut(s)	581
SinI	GGWCC	2 cut(s)	566, 696
SlaI	CTCGAG	1 cut(s)	581
SmiMI	CAYNNNNRTG	3 cut(s)	299, 314, 1123
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	5 cut(s)	335, 905, 932, 951, 1140
SsiI	CCGC	3 cut(s)	403, 749, 876
StyI	CCWWGG	1 cut(s)	1089
TaaI	ACNGT	4 cut(s)	55, 106, 677, 1040
TaiI	ACGT	2 cut(s)	165, 603
TaqI	TCGA	6 cut(s)	36, 165, 210, 266, 582, 787
TasI	AATT	5 cut(s)	335, 905, 932, 951, 1140
TfiI	GAWTC	2 cut(s)	509, 577
Tru1I	TTAA	3 cut(s)	297, 908, 954
Tru9I	TTAA	3 cut(s)	297, 908, 954
TscAI	CASTG	4 cut(s)	567, 672, 951, 1045
TseFI	GTSAC	1 cut(s)	740
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	740
TspDTI	ATGAA	8 cut(s)	7, 88, 100, 130, 131, 196, 348, 1107
TspRI	CASTG	4 cut(s)	567, 672, 951, 1045
Tth111I	GACNNNGTC	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	566, 696
XagI	CCTNNNNNAGG	1 cut(s)	716
XapI	RAATTY	2 cut(s)	335, 1140
XceI	RCATGY	3 cut(s)	304, 358, 518
XhoI	CTCGAG	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.