Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20292595 .. 20293106

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G189900.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGACACCACAACAGCTTGTTGAGTTTGGTTGGGGACTTGCAAATACTGAAACCAAAGAAAAGGGTCTAATAGCAGGTTGGAGCCCTCAAGAAGTGCTTAACCATCCATGGGTTAAAGGGTTTTTGACACCCAACGGATGGAATTCAACTATTGAGAGCGTGGCAGCTGGAATGCCTATGTTCTCCTGGCCATTCTTTGCTGAGCAGCAAACAAATTGTTGGTATACTTGCAATGGAATGGAGACTGGGATGGAGATTGATAACAATATGAAGAAAGATAAAGTGAAGAAGCTTGTTAGAGAGTTGATGGAGGGGGAGAAGGGTGAGAAAATGAAGAATAAGGCTAAAGAGTGGAAGACATTGGCAGGGGAGGCCACTGGTTCACAAGGTTCTTCATTCAAAAACTTGGACAATGTGGTGAACCATGTGCTTCTAAGGAAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

149

Amino Acids

16.69

Weight (kDa)

7.74

Isoelectric Point (pI)

29.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	65
AccB7I	CCANNNNNTGG	1 cut(s)	138
AccI	GTMKAC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	142
AfiI	CCNNNNNNNGG	2 cut(s)	109, 138
AgsI	TTSAA	2 cut(s)	147, 400
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	4 cut(s)	16, 167, 292, 444
AluI	AGCT	4 cut(s)	16, 167, 292, 444
Alw26I	GTCTC	1 cut(s)	236
AoxI	GGCC	2 cut(s)	188, 372
ApeKI	GCWGC	2 cut(s)	164, 205
ApoI	RAATTY	1 cut(s)	142
AsuHPI	GGTGA	2 cut(s)	335, 430
BalI	TGGCCA	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	362
BbvI	GCAGC	2 cut(s)	176, 217
BccI	CCATC	4 cut(s)	111, 132, 244, 301
BciT130I	CCWGG	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	236
BfuAI	ACCTGC	1 cut(s)	65
BisI	GCNGC	2 cut(s)	165, 206
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	2 cut(s)	166, 207
Bme1390I	CCNGG	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	187
BmrI	ACTGGG	1 cut(s)	255
BmuI	ACTGGG	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	362
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 138
Bse1I	ACTGG	2 cut(s)	250, 382
Bse3DI	GCAATG	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	3 cut(s)	103, 143, 255
BseLI	CCNNNNNNNGG	2 cut(s)	109, 138
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	2 cut(s)	250, 382
BseXI	GCAGC	2 cut(s)	176, 217
BshFI	GGCC	2 cut(s)	190, 374
BslFI	GGGAC	1 cut(s)	48
BslI	CCNNNNNNNGG	2 cut(s)	109, 138
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	48
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	190, 374
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp1720I	GCTNAGC	1 cut(s)	201
Bsp19I	CCATGG	1 cut(s)	107
BspANI	GGCC	2 cut(s)	190, 374
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	83
BspMI	ACCTGC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	250, 382
BssECI	CCNNGG	1 cut(s)	107
BssNAI	GTATAC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	107
Bst1107I	GTATAC	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	187
BstDEI	CTNAG	2 cut(s)	201, 434
BstDSI	CCRYGG	1 cut(s)	107
BstF5I	GGATG	3 cut(s)	103, 143, 255
BstMAI	GTCTC	1 cut(s)	236
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	176, 217
BstV2I	GAAGAC	1 cut(s)	362
BstZ17I	GTATAC	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	190, 374
BtgI	CCRYGG	1 cut(s)	107
BtsCI	GGATG	3 cut(s)	103, 143, 255
BtsIMutI	CAGTG	1 cut(s)	375
BveI	ACCTGC	1 cut(s)	65
CviAII	CATG	2 cut(s)	108, 425
CviJI	RGCY	8 cut(s)	16, 84, 167, 190, 292, 344, 374, 444
CviKI_1	RGCY	8 cut(s)	16, 84, 167, 190, 292, 344, 374, 444
DdeI	CTNAG	2 cut(s)	201, 434
EaeI	YGGCCR	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	2 cut(s)	111, 428
FaiI	YATR	5 cut(s)	109, 179, 225, 269, 426
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FaqI	GGGAC	1 cut(s)	48
FatI	CATG	2 cut(s)	107, 424
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	2 cut(s)	165, 206
FokI	GGATG	3 cut(s)	90, 150, 262
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	165, 206
GluI	GCNGC	2 cut(s)	165, 206
HaeIII	GGCC	2 cut(s)	190, 374
Hin1II	CATG	2 cut(s)	111, 428
HindIII	AAGCTT	1 cut(s)	290
HphI	GGTGA	2 cut(s)	335, 430
Hpy166II	GTNNAC	3 cut(s)	225, 383, 421
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	3 cut(s)	225, 383, 421
HpyAV	CCTTC	1 cut(s)	313
HpyCH4V	TGCA	2 cut(s)	41, 231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	2 cut(s)	201, 434
Hsp92II	CATG	2 cut(s)	111, 428
LmnI	GCTCC	1 cut(s)	81
LpnPI	CCDG	7 cut(s)	60, 153, 172, 199, 231, 351, 363
Lsp1109I	GCAGC	2 cut(s)	176, 217
MboII	GAAGA	5 cut(s)	283, 298, 346, 367, 384
MhlI	GDGCHC	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	190
MluCI	AATT	2 cut(s)	142, 214
MluNI	TGGCCA	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	3 cut(s)	96, 304, 364
Mox20I	TGGCCA	1 cut(s)	190
MscI	TGGCCA	1 cut(s)	190
MseI	TTAA	2 cut(s)	99, 114
Msp20I	TGGCCA	1 cut(s)	190
MspA1I	CMGCKG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	187
Mva1269I	GAATGC	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	371
NcoI	CCATGG	1 cut(s)	107
NlaIII	CATG	2 cut(s)	111, 428
NlaIV	GGNNCC	1 cut(s)	83
PctI	GAATGC	1 cut(s)	177
PflMI	CCANNNNNTGG	1 cut(s)	138
PkrI	GCNGC	2 cut(s)	166, 207
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	99, 114
SatI	GCNGC	2 cut(s)	165, 206
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	6 cut(s)	18, 79, 169, 294, 391, 446
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	2 cut(s)	142, 214
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	107
TasI	AATT	2 cut(s)	142, 214
Tru1I	TTAA	2 cut(s)	99, 114
Tru9I	TTAA	2 cut(s)	99, 114
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	2 cut(s)	164, 205
TspDTI	ATGAA	3 cut(s)	284, 347, 384
TspGWI	ACGGA	1 cut(s)	150
TspRI	CASTG	1 cut(s)	382
Van91I	CCANNNNNTGG	1 cut(s)	138
XapI	RAATTY	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.