Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

20578179 .. 20579620

Gene Structure 1442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G194400.1_v2.0.a1.CDS.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCCCAAAGATAAAGGGAAGATGAGAGAGGGTCCAAGGCCTAAGATGATGATCCAGTATCCAAGACCTATGGGTCAAGACCCTTTTCTAAGTGGAGAGTGGTCTTTGTTTATAGATGTCTCTGCCCTCTATCTATATGACATGAAAAATGTGACGGATGTTGTTATTGATCTCAGTCACTGCGACATTCCCGCTCAGGTTCTGGATTTCGTCGGAGCTTCTCAACTAGCCAATTCATTGAAATGTGTGGATGTGGTGGTCATAGCTGCACAGGTTCCAAATATTGTGATGCTCTCGATGATGACTTGTGATGACCTCTTCAACATCAACGCCAGCATTGTGAAGAAATTGGTCGAGGCTGTGGCGGATAACTGTCCTAAGGCCCTCATCCACATTATCAGTAATTCGATGAACTCCAGAGTGTCATTTGTTGCGGAAGAGCATAATCTGAAACCCATTAATGTTGACGTCTCGGTTGTTGGTGGACATGCTAAGATAACCATCCCTTCAGTCAGCCTGAATGATGAAGAAGTTGAAAATCTGACCGTGAAGATTCAAAATGCTGGAACTGAGGTTGTAGAGGAGAAGGGTGGTGTTGGGTCTGCTACATTGTCCATGGTATATGCAGCAGCTAGATTCGTCGAGTCATCTATGCGGGCACTGGATGGAGATGGAGATATCTATGAATACTCTTATGTGGAGTCTGATCTGATTGAACTTACATTCTTTGCATCAAGGGTTAAGCTTGGAAGGAATGGGGTTGAAGCTTTGGTAACATATATGACCTCCAAGTATGAACAAAAAGCTTTGGAAGCACTTAAGCGAGAACTGAAATCAAGCATTGAGAATGGTATTGCATTTGCTAACAAGCAAGCAGCGACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008746 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010033 GO:0010154 GO:0010319 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016651 GO:0016652 GO:0022414 GO:0030060 GO:0031090 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

296

Amino Acids

32.23

Weight (kDa)

4.99

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	72
AatII	GACGTC	1 cut(s)	471
AccBSI	CCGCTC	1 cut(s)	194
AciI	CCGC	4 cut(s)	192, 365, 434, 655
AclWI	GGATC	1 cut(s)	46
AcuI	CTGAAG	1 cut(s)	492
AcyI	GRCGYC	1 cut(s)	468
AflII	CTTAAG	1 cut(s)	818
AgsI	TTSAA	6 cut(s)	241, 322, 536, 557, 716, 764
AluBI	AGCT	6 cut(s)	218, 266, 632, 745, 767, 806
AluI	AGCT	6 cut(s)	218, 266, 632, 745, 767, 806
Alw26I	GTCTC	2 cut(s)	124, 475
AlwI	GGATC	1 cut(s)	46
AlwNI	CAGNNNCTG	3 cut(s)	180, 202, 881
AoxI	GGCC	2 cut(s)	38, 381
ApeKI	GCWGC	4 cut(s)	266, 626, 629, 875
AseI	ATTAAT	1 cut(s)	459
AspS9I	GGNCC	2 cut(s)	32, 382
AvaII	GGWCC	1 cut(s)	32
AxyI	CCTNAGG	1 cut(s)	378
BaeGI	GKGCMC	1 cut(s)	661
BbvI	GCAGC	3 cut(s)	253, 638, 641
BccI	CCATC	3 cut(s)	509, 659, 665
BciVI	GTATCC	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	124, 475
BfaI	CTAG	2 cut(s)	227, 633
BfrI	CTTAAG	1 cut(s)	818
BfuI	GTATCC	1 cut(s)	69
BisI	GCNGC	4 cut(s)	267, 627, 630, 876
BlsI	GCNGC	4 cut(s)	268, 628, 631, 877
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	32, 382
BmiI	GGNNCC	2 cut(s)	33, 276
BmsI	GCATC	2 cut(s)	279, 740
BpmI	CTGGAG	1 cut(s)	400
Bpu10I	CCTNAGC	1 cut(s)	195
BsaBI	GATNNNNATC	2 cut(s)	50, 500
BsaHI	GRCGYC	1 cut(s)	468
BsaJI	CCNNGG	2 cut(s)	35, 615
Bse1I	ACTGG	2 cut(s)	55, 666
Bse21I	CCTNAGG	1 cut(s)	378
Bse8I	GATNNNNATC	2 cut(s)	50, 500
BseDI	CCNNGG	2 cut(s)	35, 615
BseGI	GGATG	5 cut(s)	163, 256, 387, 501, 670
BseJI	GATNNNNATC	2 cut(s)	50, 500
BseMII	CTCAG	3 cut(s)	187, 209, 561
BseNI	ACTGG	2 cut(s)	55, 666
BseRI	GAGGAG	1 cut(s)	596
BseSI	GKGCMC	1 cut(s)	661
BseXI	GCAGC	3 cut(s)	253, 638, 641
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	2 cut(s)	40, 383
BsmAI	GTCTC	2 cut(s)	124, 475
BsmBI	CGTCTC	1 cut(s)	475
BsnI	GGCC	2 cut(s)	40, 383
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp143I	GATC	3 cut(s)	51, 169, 706
Bsp19I	CCATGG	1 cut(s)	615
BspACI	CCGC	4 cut(s)	192, 365, 434, 655
BspANI	GGCC	2 cut(s)	40, 383
BspCNI	CTCAG	3 cut(s)	186, 208, 562
BspLI	GGNNCC	2 cut(s)	33, 276
BspPI	GGATC	1 cut(s)	46
BspQI	GCTCTTC	1 cut(s)	432
BspTI	CTTAAG	1 cut(s)	818
BsrBI	CCGCTC	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	55, 666
BssECI	CCNNGG	2 cut(s)	35, 615
BssMI	GATC	3 cut(s)	51, 169, 706
BssNI	GRCGYC	1 cut(s)	468
BssT1I	CCWWGG	2 cut(s)	35, 615
Bst4CI	ACNGT	2 cut(s)	374, 547
Bst6I	CTCTTC	2 cut(s)	323, 432
BstACI	GRCGYC	1 cut(s)	468
BstAFI	CTTAAG	1 cut(s)	818
BstAPI	GCANNNNNTGC	1 cut(s)	881
BstC8I	GCNNGC	3 cut(s)	334, 657, 873
BstDEI	CTNAG	8 cut(s)	42, 89, 173, 195, 378, 492, 570, 885
BstDSI	CCRYGG	1 cut(s)	615
BstF5I	GGATG	5 cut(s)	163, 256, 387, 501, 670
BstKTI	GATC	3 cut(s)	54, 172, 709
BstMAI	GTCTC	2 cut(s)	124, 475
BstMBI	GATC	3 cut(s)	51, 169, 706
BstMWI	GCNNNNNNNGC	2 cut(s)	812, 881
BstNSI	RCATGY	1 cut(s)	491
BstSLI	GKGCMC	1 cut(s)	661
BstV1I	GCAGC	3 cut(s)	253, 638, 641
Bsu36I	CCTNAGG	1 cut(s)	378
BsuI	GTATCC	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	40, 383
BtgI	CCRYGG	1 cut(s)	615
BtsCI	GGATG	5 cut(s)	163, 256, 387, 501, 670
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	2 cut(s)	178, 659
Cac8I	GCNNGC	3 cut(s)	334, 657, 873
CaiI	CAGNNNCTG	3 cut(s)	180, 202, 881
Cfr13I	GGNCC	2 cut(s)	32, 382
CviAII	CATG	3 cut(s)	142, 488, 616
DdeI	CTNAG	8 cut(s)	42, 89, 173, 195, 378, 492, 570, 885
DpnI	GATC	3 cut(s)	53, 171, 708
DpnII	GATC	3 cut(s)	51, 169, 706
DrdI	GACNNNNNNGTC	1 cut(s)	72
DseDI	GACNNNNNNGTC	1 cut(s)	72
Eam1104I	CTCTTC	2 cut(s)	323, 432
EarI	CTCTTC	2 cut(s)	323, 432
EciI	GGCGGA	1 cut(s)	380
Eco130I	CCWWGG	2 cut(s)	35, 615
Eco147I	AGGCCT	1 cut(s)	40
Eco32I	GATATC	1 cut(s)	679
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	492
Eco81I	CCTNAGG	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRV	GATATC	1 cut(s)	679
EcoT14I	CCWWGG	2 cut(s)	35, 615
ErhI	CCWWGG	2 cut(s)	35, 615
Esp3I	CGTCTC	1 cut(s)	475
FaeI	CATG	3 cut(s)	145, 491, 619
FatI	CATG	3 cut(s)	141, 487, 615
FauI	CCCGC	2 cut(s)	199, 648
Fnu4HI	GCNGC	4 cut(s)	267, 627, 630, 876
FokI	GGATG	5 cut(s)	170, 263, 374, 488, 677
Fsp4HI	GCNGC	4 cut(s)	267, 627, 630, 876
FspBI	CTAG	2 cut(s)	227, 633
GluI	GCNGC	4 cut(s)	267, 627, 630, 876
GsuI	CTGGAG	1 cut(s)	400
HaeIII	GGCC	2 cut(s)	40, 383
Hin1I	GRCGYC	1 cut(s)	468
Hin1II	CATG	3 cut(s)	145, 491, 619
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HindIII	AAGCTT	3 cut(s)	743, 765, 804
HinfI	GANTC	4 cut(s)	553, 636, 644, 701
Hpy166II	GTNNAC	2 cut(s)	466, 485
Hpy188I	TCNGA	5 cut(s)	215, 450, 543, 706, 711
Hpy188III	TCNNGA	4 cut(s)	77, 203, 295, 417
Hpy8I	GTNNAC	2 cut(s)	466, 485
Hpy99I	CGWCG	2 cut(s)	215, 644
HpyAV	CCTTC	3 cut(s)	516, 580, 744
HpyCH4III	ACNGT	2 cut(s)	374, 547
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	4 cut(s)	269, 626, 731, 857
HpyF10VI	GCNNNNNNNGC	2 cut(s)	812, 881
HpyF3I	CTNAG	8 cut(s)	42, 89, 173, 195, 378, 492, 570, 885
HpySE526I	ACGT	1 cut(s)	468
Hsp92I	GRCGYC	1 cut(s)	468
Hsp92II	CATG	3 cut(s)	145, 491, 619
Kzo9I	GATC	3 cut(s)	51, 169, 706
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	9 cut(s)	68, 182, 188, 257, 346, 430, 530, 549, 647
Lsp1109I	GCAGC	3 cut(s)	253, 638, 641
LweI	GCATC	2 cut(s)	279, 740
MaeI	CTAG	2 cut(s)	227, 633
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	3 cut(s)	151, 176, 772
MalI	GATC	3 cut(s)	53, 171, 708
MbiI	CCGCTC	1 cut(s)	194
MboI	GATC	3 cut(s)	51, 169, 706
MboII	GAAGA	6 cut(s)	31, 310, 355, 449, 539, 562
MhlI	GDGCHC	1 cut(s)	661
MluCI	AATT	3 cut(s)	232, 347, 403
MlyI	GAGTC	2 cut(s)	653, 710
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	8 cut(s)	22, 137, 326, 349, 395, 565, 574, 796
MseI	TTAA	3 cut(s)	459, 741, 819
MslI	CAYNNNNRTG	1 cut(s)	241
MspCI	CTTAAG	1 cut(s)	818
MwoI	GCNNNNNNNGC	2 cut(s)	812, 881
NcoI	CCATGG	1 cut(s)	615
NdeII	GATC	3 cut(s)	51, 169, 706
NlaIII	CATG	3 cut(s)	145, 491, 619
NlaIV	GGNNCC	2 cut(s)	33, 276
NmuCI	GTSAC	2 cut(s)	151, 176
NspI	RCATGY	1 cut(s)	491
PceI	AGGCCT	1 cut(s)	40
PciSI	GCTCTTC	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	553, 636
PkrI	GCNGC	4 cut(s)	268, 628, 631, 877
PleI	GAGTC	2 cut(s)	652, 709
PpsI	GAGTC	2 cut(s)	652, 709
PshBI	ATTAAT	1 cut(s)	459
PspN4I	GGNNCC	2 cut(s)	33, 276
PspPI	GGNCC	2 cut(s)	32, 382
PstNI	CAGNNNCTG	3 cut(s)	180, 202, 881
RseI	CAYNNNNRTG	1 cut(s)	241
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	3 cut(s)	459, 741, 819
SatI	GCNGC	4 cut(s)	267, 627, 630, 876
Sau3AI	GATC	3 cut(s)	51, 169, 706
Sau96I	GGNCC	2 cut(s)	32, 382
SchI	GAGTC	2 cut(s)	653, 710
SduI	GDGCHC	1 cut(s)	661
SfaNI	GCATC	2 cut(s)	279, 740
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	818
SmoI	CTYRAG	1 cut(s)	818
Sse9I	AATT	3 cut(s)	232, 347, 403
SseBI	AGGCCT	1 cut(s)	40
SsiI	CCGC	4 cut(s)	192, 365, 434, 655
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	2 cut(s)	227, 633
StuI	AGGCCT	1 cut(s)	40
StyI	CCWWGG	2 cut(s)	35, 615
TaaI	ACNGT	2 cut(s)	374, 547
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	4 cut(s)	296, 354, 407, 642
TasI	AATT	3 cut(s)	232, 347, 403
TfiI	GAWTC	2 cut(s)	553, 636
Tru1I	TTAA	3 cut(s)	459, 741, 819
Tru9I	TTAA	3 cut(s)	459, 741, 819
TscAI	CASTG	2 cut(s)	185, 666
TseFI	GTSAC	2 cut(s)	151, 176
TseI	GCWGC	4 cut(s)	266, 626, 629, 875
Tsp45I	GTSAC	2 cut(s)	151, 176
TspDTI	ATGAA	6 cut(s)	158, 225, 425, 540, 699, 810
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	2 cut(s)	185, 666
Vha464I	CTTAAG	1 cut(s)	818
VpaK11BI	GGWCC	1 cut(s)	32
VspI	ATTAAT	1 cut(s)	459
XceI	RCATGY	1 cut(s)	491
XspI	CTAG	2 cut(s)	227, 633
ZraI	GACGTC	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.