Prupe.3G195800_v2.0.a1

Ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Forward (+)
20687451 .. 20688920
1470 bp
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UTR
Exon/CDS
Intron
Prupe.3G195800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 210 bp
ATGGCTGAAGCTTCAAGAGCTCTGCAAACCACTCTCATTCCCAGTTTCCATTCACAACACAAAGTCTCACATTTCAAAATTTCCGTAGAAACCCAAATTCAGTGCTCAGTCTCCACATGTGACAGCACCAGAAACAGAGTGACCCAGAAGATCCATGGGCCTGTGACATTGATTCCTTGTAAAACGCTTCTCCTTTGCAGAAATGGCTGA
Functional Annotation

Protein Analysis

70

Amino Acids

7.65

Weight (kDa)

9.5

Isoelectric Point (pI)

23.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 145
AcsI RAATTY 2 cut(s) 78, 96
AcuI CTGAAG 1 cut(s) 27
AflIII ACRYGT 1 cut(s) 116
AgsI TTSAA 2 cut(s) 15, 76
AluBI AGCT 2 cut(s) 11, 20
AluI AGCT 2 cut(s) 11, 20
Alw21I GWGCWC 2 cut(s) 22, 107
Alw26I GTCTC 2 cut(s) 70, 115
AlwI GGATC 1 cut(s) 145
AoxI GGCC 1 cut(s) 158
ApoI RAATTY 2 cut(s) 78, 96
AspS9I GGNCC 1 cut(s) 158
BanII GRGCYC 1 cut(s) 22
Bbv12I GWGCWC 2 cut(s) 22, 107
BcoDI GTCTC 2 cut(s) 70, 115
BmgT120I GGNCC 1 cut(s) 158
BmrI ACTGGG 1 cut(s) 36
BmuI ACTGGG 1 cut(s) 36
BsaJI CCNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 42
BshFI GGCC 1 cut(s) 160
BsiHKAI GWGCWC 2 cut(s) 22, 107
BsmAI GTCTC 2 cut(s) 70, 115
BsnI GGCC 1 cut(s) 160
Bsp1286I GDGCHC 2 cut(s) 22, 107
Bsp143I GATC 1 cut(s) 150
Bsp19I CCATGG 1 cut(s) 154
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 1 cut(s) 119
BspPI GGATC 1 cut(s) 145
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 106
BstDSI CCRYGG 1 cut(s) 154
BstKTI GATC 1 cut(s) 153
BstMAI GTCTC 2 cut(s) 70, 115
BstMBI GATC 1 cut(s) 150
BstMWI GCNNNNNNNGC 2 cut(s) 17, 204
BstNSI RCATGY 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BsuRI GGCC 1 cut(s) 160
BtgI CCRYGG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 158
CviAII CATG 2 cut(s) 117, 155
CviJI RGCY 5 cut(s) 5, 11, 20, 160, 207
CviKI_1 RGCY 5 cut(s) 5, 11, 20, 160, 207
DdeI CTNAG 1 cut(s) 106
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
Ecl136II GAGCTC 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 22
Eco53kI GAGCTC 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 27
EcoICRI GAGCTC 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 154
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 2 cut(s) 120, 158
FaiI YATR 2 cut(s) 118, 156
FatI CATG 2 cut(s) 116, 154
FriOI GRGCYC 1 cut(s) 22
HaeIII GGCC 1 cut(s) 160
Hin1II CATG 2 cut(s) 120, 158
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 1 cut(s) 172
Hpy188III TCNNGA 1 cut(s) 15
HpyCH4V TGCA 2 cut(s) 25, 198
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 204
HpyF3I CTNAG 1 cut(s) 106
Hsp92II CATG 2 cut(s) 120, 158
Kzo9I GATC 1 cut(s) 150
LpnPI CCDG 4 cut(s) 55, 142, 158, 174
MaeIII GTNAC 3 cut(s) 119, 139, 163
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 1 cut(s) 160
MflI RGATCY 1 cut(s) 150
MhlI GDGCHC 2 cut(s) 22, 107
MluCI AATT 2 cut(s) 78, 96
MwoI GCNNNNNNNGC 2 cut(s) 17, 204
NcoI CCATGG 1 cut(s) 154
NdeII GATC 1 cut(s) 150
NlaIII CATG 2 cut(s) 120, 158
NmuCI GTSAC 3 cut(s) 119, 139, 163
NspI RCATGY 1 cut(s) 120
PciI ACATGT 1 cut(s) 116
PfeI GAWTC 1 cut(s) 172
PscI ACATGT 1 cut(s) 116
Psp124BI GAGCTC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 158
PsuI RGATCY 1 cut(s) 150
SacI GAGCTC 1 cut(s) 22
Sau3AI GATC 1 cut(s) 150
Sau96I GGNCC 1 cut(s) 158
SduI GDGCHC 2 cut(s) 22, 107
SetI ASST 2 cut(s) 13, 22
SgeI CNNG 8 cut(s) 27, 54, 129, 141, 157, 167, 173, 189
Sse9I AATT 2 cut(s) 78, 96
SstI GAGCTC 1 cut(s) 22
StyI CCWWGG 1 cut(s) 154
TasI AATT 2 cut(s) 78, 96
TfiI GAWTC 1 cut(s) 172
TscAI CASTG 1 cut(s) 107
TseFI GTSAC 3 cut(s) 119, 139, 163
Tsp45I GTSAC 3 cut(s) 119, 139, 163
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 1 cut(s) 107
XapI RAATTY 2 cut(s) 78, 96
XceI RCATGY 1 cut(s) 120
XcmI CCANNNNNNNNNTGG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.