Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

21865695 .. 21866370

Gene Structure 676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G216300.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGATGTCAAGTGCGCGGGTGCTGTTTCTCAATTGGGTCTGGGAGATTTGCGGTCTGGGCCATCTGGGTTGGCTTTGAATCGGGTGGATTGGTTGGAGAAAGTGAACAAATGGGTTTGTTTTAATGGGCTCCTGGGCTCACCGGTTCTCTGGACAATAAGGTATGTGGAGGACAAGAAGCCTTCCATGCCAGCCAATGACATGCAGGTAGAATTTTATAGTGAAGGCCTTATCTATCTAGTTGCAGAGGTTGCAGATCAGATGGAGCACAACGATTCCAAGACATTGCATATGGATTTGAGCTGTTTCCCAAGACCGTTTAACTGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004664 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006558 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009094 GO:0009095 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0017144 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0047769 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902221 GO:1902223

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PDT

Protein Analysis

111

Amino Acids

12.32

Weight (kDa)

4.99

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AccII	CGCG	1 cut(s)	17
AciI	CCGC	2 cut(s)	17, 52
AcsI	RAATTY	1 cut(s)	212
AgeI	ACCGGT	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	79
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	1 cut(s)	303
AluI	AGCT	1 cut(s)	303
Alw21I	GWGCWC	1 cut(s)	270
AoxI	GGCC	2 cut(s)	59, 226
ApoI	RAATTY	1 cut(s)	212
AsiGI	ACCGGT	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	132
BanII	GRGCYC	2 cut(s)	132, 140
Bbv12I	GWGCWC	1 cut(s)	270
BccI	CCATC	2 cut(s)	70, 256
BciT130I	CCWGG	1 cut(s)	134
BfaI	CTAG	1 cut(s)	239
BfuAI	ACCTGC	1 cut(s)	196
Bme1390I	CCNGG	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	131
BmrFI	CCNGG	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	133
BsaWI	WCCGGW	1 cut(s)	142
Bse118I	RCCGGY	1 cut(s)	142
Bse3DI	GCAATG	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	10
BseMI	GCAATG	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	61, 228
BshTI	ACCGGT	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	143
BsnI	GGCC	2 cut(s)	61, 228
Bsp1286I	GDGCHC	3 cut(s)	132, 140, 270
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	2 cut(s)	17, 52
BspANI	GGCC	2 cut(s)	61, 228
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	131
BspMI	ACCTGC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 187, 251
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	17
BsuRI	GGCC	2 cut(s)	61, 228
BtsCI	GGATG	1 cut(s)	10
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	192
CfoI	GCGC	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	59
CspAI	ACCGGT	1 cut(s)	142
CviAII	CATG	2 cut(s)	187, 202
CviJI	RGCY	8 cut(s)	61, 74, 130, 138, 181, 194, 228, 303
CviKI_1	RGCY	8 cut(s)	61, 74, 130, 138, 181, 194, 228, 303
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
Eco147I	AGGCCT	1 cut(s)	228
Eco24I	GRGCYC	2 cut(s)	132, 140
EcoRII	CCWGG	1 cut(s)	132
EcoT38I	GRGCYC	2 cut(s)	132, 140
FaeI	CATG	2 cut(s)	190, 205
FaiI	YATR	6 cut(s)	165, 188, 203, 219, 291, 293
FatI	CATG	2 cut(s)	186, 201
FauI	CCCGC	1 cut(s)	10
FauNDI	CATATG	1 cut(s)	291
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	2 cut(s)	132, 140
FspBI	CTAG	1 cut(s)	239
GlaI	GCGC	1 cut(s)	16
HaeIII	GGCC	2 cut(s)	61, 228
HapII	CCGG	1 cut(s)	143
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	2 cut(s)	190, 205
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HinfI	GANTC	2 cut(s)	79, 275
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	1 cut(s)	132
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	261, 332
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	2 cut(s)	192, 218
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4V	TGCA	5 cut(s)	205, 245, 254, 289, 327
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 187, 251
Hsp92II	CATG	2 cut(s)	190, 205
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	2 cut(s)	135, 265
LpnPI	CCDG	9 cut(s)	26, 42, 51, 119, 136, 146, 156, 191, 204
MaeI	CTAG	1 cut(s)	239
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MfeI	CAATTG	1 cut(s)	32
MhlI	GDGCHC	3 cut(s)	132, 140, 270
MluCI	AATT	2 cut(s)	32, 212
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	2 cut(s)	163, 241
MseI	TTAA	2 cut(s)	123, 321
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	134
MunI	CAATTG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	3 cut(s)	58, 187, 251
NdeI	CATATG	1 cut(s)	291
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	2 cut(s)	190, 205
NlaIV	GGNNCC	1 cut(s)	131
NspI	RCATGY	1 cut(s)	205
PceI	AGGCCT	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	79, 275
PinAI	ACCGGT	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	123, 321
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	3 cut(s)	132, 140, 270
SetI	ASST	4 cut(s)	164, 210, 252, 305
Sse9I	AATT	2 cut(s)	32, 212
SseBI	AGGCCT	1 cut(s)	228
SsiI	CCGC	2 cut(s)	17, 52
SspMI	CTAG	1 cut(s)	239
StuI	AGGCCT	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	318
TasI	AATT	2 cut(s)	32, 212
TfiI	GAWTC	2 cut(s)	79, 275
Tru1I	TTAA	2 cut(s)	123, 321
Tru9I	TTAA	2 cut(s)	123, 321
XapI	RAATTY	1 cut(s)	212
XceI	RCATGY	1 cut(s)	205
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.