Prupe.3G217700_v2.0.a1

60S ribosomal Protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Reverse (-)
21965401 .. 21966065
665 bp
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UTR
Exon/CDS
Intron
Prupe.3G217700.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 201 bp
ATGATGAAGAAGAAAATGGGTGGTTGCGGCGGTTATGGGTTCGTGGGGGTGGGGGTGTTTGTCTGTGGGTTCTCAGTTCGTTGGGGGAGAAATGATGAAGAAGATGCCAAGGAGGAGTTATACTCACTAGTCACTGTTACAGAGGTCCTTCCAGAGGGATTTACTGGTTTGGGCACCAAGGTGATCGACGAAGAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

67

Amino Acids

7.17

Weight (kDa)

4.55

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AciI CCGC 2 cut(s) 27, 30
AfiI CCNNNNNNNGG 1 cut(s) 154
AhlI ACTAGT 1 cut(s) 127
AleI CACNNNNGTG 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 193
AvaII GGWCC 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 176
BanI GGYRCC 1 cut(s) 173
BcuI ACTAGT 1 cut(s) 127
BfaI CTAG 1 cut(s) 128
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 175
BmsI GCATC 1 cut(s) 94
BplI GAGNNNNNCTC 2 cut(s) 107, 139
BsaJI CCNNGG 2 cut(s) 108, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 169
BseDI CCNNGG 2 cut(s) 108, 177
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 128
BseSI GKGCMC 1 cut(s) 176
BshNI GGYRCC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 1 cut(s) 183
BspACI CCGC 2 cut(s) 27, 30
BspCNI CTCAG 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 173
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 108, 177
BssMI GATC 1 cut(s) 183
BssT1I CCWWGG 2 cut(s) 108, 177
Bst4CI ACNGT 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 73
BstENI CCTNNNNNAGG 1 cut(s) 152
BstKTI GATC 1 cut(s) 186
BstMBI GATC 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 73
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
Eco130I CCWWGG 2 cut(s) 108, 177
Eco47I GGWCC 1 cut(s) 145
EcoNI CCTNNNNNAGG 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 145
EcoT14I CCWWGG 2 cut(s) 108, 177
ErhI CCWWGG 2 cut(s) 108, 177
FaiI YATR 2 cut(s) 36, 121
Fnu4HI GCNGC 1 cut(s) 28
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 1 cut(s) 128
GluI GCNGC 1 cut(s) 28
HphI GGTGA 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 152
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 136
HpyF3I CTNAG 1 cut(s) 73
Kzo9I GATC 1 cut(s) 183
LpnPI CCDG 2 cut(s) 150, 165
LweI GCATC 1 cut(s) 94
MaeI CTAG 1 cut(s) 128
MaeIII GTNAC 2 cut(s) 130, 136
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 4 cut(s) 19, 22, 110, 113
MhlI GDGCHC 1 cut(s) 176
MnlI CCTC 3 cut(s) 106, 136, 148
MslI CAYNNNNRTG 1 cut(s) 179
NdeII GATC 1 cut(s) 183
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 130
OliI CACNNNNGTG 1 cut(s) 179
PkrI GCNGC 1 cut(s) 29
PpuMI RGGWCCY 1 cut(s) 145
Psp5II RGGWCCY 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 1 cut(s) 145
PspPPI RGGWCCY 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 179
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 1 cut(s) 183
Sau96I GGNCC 1 cut(s) 145
SduI GDGCHC 1 cut(s) 176
SetI ASST 2 cut(s) 147, 183
SfaNI GCATC 1 cut(s) 94
SgeI CNNG 6 cut(s) 55, 121, 140, 164, 177, 190
SinI GGWCC 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 179
SpeI ACTAGT 1 cut(s) 127
SsiI CCGC 2 cut(s) 27, 30
SspMI CTAG 1 cut(s) 128
StyI CCWWGG 2 cut(s) 108, 177
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 186
TauI GCSGC 1 cut(s) 30
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 2 cut(s) 20, 111
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 145
XagI CCTNNNNNAGG 1 cut(s) 152
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.