Prupe.3G227400_v2.0.a1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Reverse (-)
22661118 .. 22662285
1168 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G227400.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 333 bp
ATGAAGAGAAGAATGAGTGAGGAAAGAAAGAAAGGAAGAGAAGGAAGAAAGAGGGTCGCGATCGCCGTCTATTTAAGCGAGGAGAGGGCCTTCGCGGTCCAATGGGCTATACAGAACTACCTCCGGCCCGGGGACTCCGTCGTCCTCCTCCACGTGCTCCCCACGAGCGTCCTCTACGGCGCCGAGTGGGCGTCAGTCGACCCCAATCTCCCCAACGACGCCGTTTCCTCCTCAGAGTTTATATCCATGACTTGCAACATGATGATCATTGTAAAACATTCTTTTGGCTGTATCTCTATTCTTGTAATGGTGCATGCCAAAAGGAACCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

111

Amino Acids

12.45

Weight (kDa)

9.56

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
AccB1I GGYRCC 1 cut(s) 179
AccI GTMKAC 1 cut(s) 198
AccII CGCG 2 cut(s) 59, 95
AciI CCGC 1 cut(s) 95
AcvI CACGTG 1 cut(s) 154
AcyI GRCGYC 3 cut(s) 180, 191, 219
AfiI CCNNNNNNNGG 1 cut(s) 130
Alw21I GWGCWC 1 cut(s) 159
Ama87I CYCGRG 1 cut(s) 128
AoxI GGCC 2 cut(s) 87, 125
AsiSI GCGATCGC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 3 cut(s) 87, 97, 126
AsuC2I CCSGG 2 cut(s) 129, 130
AvaI CYCGRG 1 cut(s) 128
AvaII GGWCC 1 cut(s) 97
BanI GGYRCC 1 cut(s) 179
BauI CACGAG 1 cut(s) 163
BbrPI CACGTG 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 159
BceAI ACGGC 3 cut(s) 50, 193, 206
BclI TGATCA 1 cut(s) 264
BcnI CCSGG 2 cut(s) 129, 130
BfoI RGCGCY 1 cut(s) 183
BglI GCCNNNNNGGC 1 cut(s) 188
Bme1390I CCNGG 2 cut(s) 129, 130
Bme18I GGWCC 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 3 cut(s) 87, 97, 126
BmiI GGNNCC 2 cut(s) 181, 326
BmrFI CCNGG 2 cut(s) 129, 130
BpuMI CCSGG 2 cut(s) 129, 130
BsaAI YACGTR 1 cut(s) 154
BsaHI GRCGYC 3 cut(s) 180, 191, 219
BsaJI CCNNGG 2 cut(s) 128, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 130
BseDI CCNNGG 2 cut(s) 128, 129
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 246
BseRI GAGGAG 3 cut(s) 95, 137, 220
Bsh1236I CGCG 2 cut(s) 59, 95
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 2 cut(s) 89, 127
BshNI GGYRCC 1 cut(s) 179
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 2 cut(s) 124, 129
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 2 cut(s) 89, 127
BsoBI CYCGRG 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 60, 264
Bsp68I TCGCGA 1 cut(s) 59
BspACI CCGC 1 cut(s) 95
BspANI GGCC 2 cut(s) 89, 127
BspCNI CTCAG 1 cut(s) 245
BspFNI CGCG 2 cut(s) 59, 95
BspLI GGNNCC 2 cut(s) 181, 326
BspT107I GGYRCC 1 cut(s) 179
BssECI CCNNGG 2 cut(s) 128, 129
BssMI GATC 2 cut(s) 60, 264
BssNI GRCGYC 3 cut(s) 180, 191, 219
BssSI CACGAG 1 cut(s) 163
Bst2BI CACGAG 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 31
BstACI GRCGYC 3 cut(s) 180, 191, 219
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 1 cut(s) 232
BstFNI CGCG 2 cut(s) 59, 95
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 2 cut(s) 63, 267
BstMBI GATC 2 cut(s) 60, 264
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNSI RCATGY 1 cut(s) 317
BstSCI CCNGG 2 cut(s) 127, 128
BstUI CGCG 2 cut(s) 59, 95
BsuRI GGCC 2 cut(s) 89, 127
BtuMI TCGCGA 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 315
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 3 cut(s) 87, 97, 126
Cfr9I CCCGGG 1 cut(s) 128
CseI GACGC 3 cut(s) 157, 180, 227
CviAII CATG 3 cut(s) 247, 259, 314
CviJI RGCY 4 cut(s) 89, 107, 127, 288
CviKI_1 RGCY 4 cut(s) 89, 107, 127, 288
DdeI CTNAG 1 cut(s) 232
DinI GGCGCC 1 cut(s) 181
DpnI GATC 2 cut(s) 62, 266
DpnII GATC 2 cut(s) 60, 264
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 97
Eco72I CACGTG 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 87
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
FaeI CATG 3 cut(s) 250, 262, 317
FaiI YATR 5 cut(s) 110, 242, 248, 260, 315
FaqI GGGAC 1 cut(s) 146
FatI CATG 3 cut(s) 246, 258, 313
FbaI TGATCA 1 cut(s) 264
FblI GTMKAC 1 cut(s) 198
GlaI GCGC 1 cut(s) 181
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 2 cut(s) 89, 127
HapII CCGG 2 cut(s) 124, 129
HgaI GACGC 3 cut(s) 157, 180, 227
HhaI GCGC 1 cut(s) 182
Hin1I GRCGYC 3 cut(s) 180, 191, 219
Hin1II CATG 3 cut(s) 250, 262, 317
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 1 cut(s) 134
HpaII CCGG 2 cut(s) 124, 129
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 1 cut(s) 58
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 2 cut(s) 143, 221
HpyAV CCTTC 2 cut(s) 35, 100
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 255, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 232
HpySE526I ACGT 1 cut(s) 153
Hsp92I GRCGYC 3 cut(s) 180, 191, 219
Hsp92II CATG 3 cut(s) 250, 262, 317
HspAI GCGC 1 cut(s) 180
KasI GGCGCC 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 2 cut(s) 60, 264
LmnI GCTCC 1 cut(s) 162
LpnPI CCDG 2 cut(s) 137, 142
MaeII ACGT 1 cut(s) 153
MalI GATC 2 cut(s) 62, 266
MboI GATC 2 cut(s) 60, 264
MboII GAAGA 4 cut(s) 16, 21, 48, 57
MhlI GDGCHC 1 cut(s) 159
Mly113I GGCGCC 1 cut(s) 180
MlyI GAGTC 1 cut(s) 128
MseI TTAA 1 cut(s) 74
MspI CCGG 2 cut(s) 124, 129
MspR9I CCNGG 2 cut(s) 129, 130
MvnI CGCG 2 cut(s) 59, 95
MwoI GCNNNNNNNGC 1 cut(s) 188
NarI GGCGCC 1 cut(s) 180
NciI CCSGG 2 cut(s) 129, 130
NdeII GATC 2 cut(s) 60, 264
NlaIII CATG 3 cut(s) 250, 262, 317
NlaIV GGNNCC 2 cut(s) 181, 326
NmeAIII GCCGAG 1 cut(s) 208
NruI TCGCGA 1 cut(s) 59
NspI RCATGY 1 cut(s) 317
PaeI GCATGC 1 cut(s) 317
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PflFI GACNNNGTC 1 cut(s) 137
Ple19I CGATCG 1 cut(s) 63
PleI GAGTC 1 cut(s) 128
PluTI GGCGCC 1 cut(s) 183
PmaCI CACGTG 1 cut(s) 154
PmlI CACGTG 1 cut(s) 154
PpsI GAGTC 1 cut(s) 128
Ppu21I YACGTR 1 cut(s) 154
PspCI CACGTG 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 181, 326
PspPI GGNCC 3 cut(s) 87, 97, 126
PsyI GACNNNGTC 1 cut(s) 137
PvuI CGATCG 1 cut(s) 63
RgaI GCGATCGC 1 cut(s) 63
RruI TCGCGA 1 cut(s) 59
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 74
Sau3AI GATC 2 cut(s) 60, 264
Sau96I GGNCC 3 cut(s) 87, 97, 126
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 2 cut(s) 129, 130
SduI GDGCHC 1 cut(s) 159
SetI ASST 3 cut(s) 123, 156, 330
SfaAI GCGATCGC 1 cut(s) 63
SfoI GGCGCC 1 cut(s) 181
SgfI GCGATCGC 1 cut(s) 63
SinI GGWCC 1 cut(s) 97
SmaI CCCGGG 1 cut(s) 130
SphI GCATGC 1 cut(s) 317
SsiI CCGC 1 cut(s) 95
SspDI GGCGCC 1 cut(s) 179
StyD4I CCNGG 2 cut(s) 127, 128
TaiI ACGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 198
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 127
TspMI CCCGGG 1 cut(s) 128
Tth111I GACNNNGTC 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 97
XceI RCATGY 1 cut(s) 317
XmaI CCCGGG 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.