Prupe.3G230100_v2.0.a1

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Forward (+)
22790414 .. 22791102
689 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G230100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 279 bp
ATGAGGTGGAAGAGCAAGGCTTGGGCTGTTTTGGGCACTGTTGTAGCTGTGGAGGAGTTGAAAGAAAAGAATCTAAGCAAATGGAGATCCCTGCAGAGTTACCAACATGCACTAATTAACAACATTGTGCCACTGTCTACACAAGTGGGAAAATCTTCATCTACATCTTCAACAATGGAGTCAAAGAAGAAATATTGCAAGCAGGGGACTCTGAATCTGAAGCAATCAGAAGAACCACTTAGACTAATTATGTACTTGAGCTGTTGGGGACCCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

93

Amino Acids

10.47

Weight (kDa)

9.78

Isoelectric Point (pI)

64.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 137
AclWI GGATC 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 239
AfaI GTAC 1 cut(s) 254
AgsI TTSAA 2 cut(s) 61, 171
AluBI AGCT 2 cut(s) 47, 261
AluI AGCT 2 cut(s) 47, 261
AlwI GGATC 1 cut(s) 81
Asp700I GAANNNNTTC 1 cut(s) 154
AspS9I GGNCC 1 cut(s) 269
AvaII GGWCC 1 cut(s) 269
BaeGI GKGCMC 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 2 cut(s) 270, 271
BpuEI CTTGAG 1 cut(s) 277
BseRI GAGGAG 1 cut(s) 68
BseSI GKGCMC 1 cut(s) 38
BslFI GGGAC 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 86
BspLI GGNNCC 2 cut(s) 270, 271
BspMAI CTGCAG 1 cut(s) 96
BspPI GGATC 1 cut(s) 81
BspQI GCTCTTC 1 cut(s) 5
BssMI GATC 1 cut(s) 86
Bst4CI ACNGT 2 cut(s) 40, 135
Bst6I CTCTTC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 200
BstDEI CTNAG 2 cut(s) 74, 239
BstKTI GATC 1 cut(s) 89
BstMBI GATC 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 92
BstSLI GKGCMC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 86
BstYI RGATCY 1 cut(s) 86
BtsIMutI CAGTG 2 cut(s) 36, 131
Cac8I GCNNGC 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 253
CviAII CATG 1 cut(s) 107
CviJI RGCY 4 cut(s) 20, 26, 47, 261
CviKI_1 RGCY 4 cut(s) 20, 26, 47, 261
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 2 cut(s) 74, 239
DpnI GATC 1 cut(s) 88
DpnII GATC 1 cut(s) 86
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco47I GGWCC 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 239
EcoO109I RGGNCCY 1 cut(s) 269
FaeI CATG 1 cut(s) 110
FaiI YATR 2 cut(s) 108, 251
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FaqI GGGAC 1 cut(s) 220
FatI CATG 1 cut(s) 106
FblI GTMKAC 1 cut(s) 137
Hin1II CATG 1 cut(s) 110
HinfI GANTC 4 cut(s) 70, 179, 208, 214
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 3 cut(s) 213, 219, 229
Hpy8I GTNNAC 1 cut(s) 138
HpyCH4III ACNGT 2 cut(s) 40, 135
HpyCH4V TGCA 3 cut(s) 94, 110, 198
HpyF3I CTNAG 2 cut(s) 74, 239
Hsp92II CATG 1 cut(s) 110
KflI GGGWCCC 1 cut(s) 269
Kzo9I GATC 1 cut(s) 86
LguI GCTCTTC 1 cut(s) 5
LpnPI CCDG 2 cut(s) 104, 188
MaeIII GTNAC 1 cut(s) 98
MalI GATC 1 cut(s) 88
MboI GATC 1 cut(s) 86
MboII GAAGA 5 cut(s) 22, 147, 159, 199, 242
MflI RGATCY 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 2 cut(s) 114, 246
MlyI GAGTC 2 cut(s) 188, 202
MnlI CCTC 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 154
MseI TTAA 1 cut(s) 117
NdeII GATC 1 cut(s) 86
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 2 cut(s) 270, 271
NspI RCATGY 1 cut(s) 110
PciSI GCTCTTC 1 cut(s) 5
PdmI GAANNNNTTC 1 cut(s) 154
PfeI GAWTC 2 cut(s) 70, 214
PleI GAGTC 2 cut(s) 187, 202
PpsI GAGTC 2 cut(s) 187, 202
PpuMI RGGWCCY 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 269
PspN4I GGNNCC 2 cut(s) 270, 271
PspPI GGNCC 1 cut(s) 269
PspPPI RGGWCCY 1 cut(s) 269
PstI CTGCAG 1 cut(s) 96
PsuI RGATCY 1 cut(s) 86
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SapI GCTCTTC 1 cut(s) 5
SaqAI TTAA 1 cut(s) 117
Sau3AI GATC 1 cut(s) 86
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 2 cut(s) 188, 202
SduI GDGCHC 1 cut(s) 38
SetI ASST 3 cut(s) 8, 49, 263
SfcI CTRYAG 1 cut(s) 92
SgeI CNNG 8 cut(s) 28, 33, 103, 119, 155, 211, 215, 268
SinI GGWCC 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 256
SmoI CTYRAG 1 cut(s) 256
Sse9I AATT 2 cut(s) 114, 246
SspI AATATT 1 cut(s) 194
TaaI ACNGT 2 cut(s) 40, 135
TasI AATT 2 cut(s) 114, 246
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 2 cut(s) 70, 214
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 2 cut(s) 43, 138
TspDTI ATGAA 1 cut(s) 147
TspRI CASTG 2 cut(s) 43, 138
VpaK11BI GGWCC 1 cut(s) 269
XceI RCATGY 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.