Prupe.3G230800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Forward (+)
22827439 .. 22828824
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G230800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 861 bp
ATGGCAACCCAATCGGTGAGCTTGTCCGCCGTGCTTCTCAAATCACTGAGCCTAATGATCTCTCATTGCTCACTCCACTTCTTCTTGTTGCTCGTTCCCCACGCTTTCAAGCTCTCCACAGTTTTCTACCCAGCTTTGCTTAAAGCCGTCGCCAAACCAGTCCGCCAGATACTATTTCTCACAACTCCTCCTCCTCCTACTACTTCTCAGCCTCAAAATACCCAATCCGCCATTTTTGGTTTGGTCGTCTTCCTGGCTTTAGACATCATCCCCTATCTCTGGGTAGTGGGATCCGCCACCAACAGCGCGCTTCGCGGGCTCCAAGGCCTACCCGCCGCTGTGAACTCCGGCAGGTCTTGGGTTCTTCCTCTGGTGTTCACACGCGTGCTTTCCCTGATGCAGATTGCGTCGTCCTCCTCACTGTTCCGGCTGTTGCTGGATTTGATGGTCCCTGTTATTGGTCCCTATTTCACTGCTTTCTTGGGTTTGTTTTTTCTGATGGTCTTACAGAACCGTGACTTGATGTGGAGCCTAGCTCCGGCCGTCGTGGTGGCGGAGTCGAAATTGGGTCAGGATGCCCTAGAGAGGAGCAGCGGGTTAGTAAGACAAAGGGGGCTGAAAAGAGTTGTGCGGTGTTTAGTGGGGTTTTATGTGTTTGCCACTTGGGGGTTGGGAATTTTGTGGATGAAGTCGGAGGGGGCAGTTAATTTACTGCGGAGTTGGGCATTGGGCCTCCTTGCTTCATTCTTGCTTCTGTGGTACACGGTGGCAGTCACTGTGTTGTATTGCATAGCTTGTGAGGGTGATGAAGAGGCTGATGGCGATGTGAAGTTGCCAATTGAAGATGATGATGAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

31.27

Weight (kDa)

8.36

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 342
AccII CGCG 3 cut(s) 308, 315, 384
AclWI GGATC 2 cut(s) 285, 298
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 1 cut(s) 675
AfaI GTAC 1 cut(s) 761
AfiI CCNNNNNNNGG 5 cut(s) 279, 458, 538, 585, 666
AflIII ACRYGT 1 cut(s) 382
AgsI TTSAA 2 cut(s) 109, 842
AjnI CCWGG 1 cut(s) 252
AleI CACNNNNGTG 1 cut(s) 383
AluBI AGCT 5 cut(s) 21, 112, 134, 536, 794
AluI AGCT 5 cut(s) 21, 112, 134, 536, 794
AlwI GGATC 2 cut(s) 285, 298
AlwNI CAGNNNCTG 1 cut(s) 776
AoxI GGCC 3 cut(s) 325, 540, 730
ApeKI GCWGC 1 cut(s) 591
ApoI RAATTY 1 cut(s) 675
AspLEI GCGC 2 cut(s) 308, 310
AspS9I GGNCC 3 cut(s) 448, 461, 730
AsuHPI GGTGA 2 cut(s) 28, 815
AvaII GGWCC 2 cut(s) 448, 461
BamHI GGATCC 1 cut(s) 290
BanII GRGCYC 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 603
BccI CCATC 3 cut(s) 439, 493, 812
BceAI ACGGC 3 cut(s) 14, 131, 527
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 254
BfaI CTAG 2 cut(s) 533, 581
BfuAI ACCTGC 1 cut(s) 342
BisI GCNGC 2 cut(s) 336, 592
BlsI GCNGC 2 cut(s) 337, 593
Bme1390I CCNGG 1 cut(s) 254
Bme18I GGWCC 2 cut(s) 448, 461
BmgT120I GGNCC 3 cut(s) 448, 461, 730
BmiI GGNNCC 5 cut(s) 292, 320, 450, 463, 530
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 2 cut(s) 387, 565
BpiI GAAGAC 1 cut(s) 241
BplI GAGNNNNNCTC 2 cut(s) 520, 552
BsaJI CCNNGG 1 cut(s) 322
BsaXI ACNNNNNCTCC 4 cut(s) 172, 175, 202, 205
Bsc4I CCNNNNNNNGG 5 cut(s) 279, 458, 538, 585, 666
Bse1I ACTGG 1 cut(s) 158
Bse3DI GCAATG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 322
BseGI GGATG 3 cut(s) 267, 580, 690
BseLI CCNNNNNNNGG 5 cut(s) 279, 458, 538, 585, 666
BseMI GCAATG 1 cut(s) 64
BseMII CTCAG 2 cut(s) 38, 221
BseNI ACTGG 1 cut(s) 158
BsePI GCGCGC 1 cut(s) 306
BseRI GAGGAG 5 cut(s) 177, 180, 183, 406, 601
BseX3I CGGCCG 1 cut(s) 540
BseXI GCAGC 1 cut(s) 603
BseYI CCCAGC 1 cut(s) 130
Bsh1236I CGCG 3 cut(s) 308, 315, 384
Bsh1285I CGRYCG 1 cut(s) 543
BshFI GGCC 3 cut(s) 327, 542, 732
BsiEI CGRYCG 1 cut(s) 543
BsiSI CCGG 3 cut(s) 348, 427, 539
BslFI GGGAC 2 cut(s) 434, 447
BslI CCNNNNNNNGG 5 cut(s) 279, 458, 538, 585, 666
BsmFI GGGAC 2 cut(s) 434, 447
BsnI GGCC 3 cut(s) 327, 542, 732
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 2 cut(s) 57, 290
BspANI GGCC 3 cut(s) 327, 542, 732
BspCNI CTCAG 2 cut(s) 39, 220
BspFNI CGCG 3 cut(s) 308, 315, 384
BspLI GGNNCC 5 cut(s) 292, 320, 450, 463, 530
BspMI ACCTGC 1 cut(s) 342
BspPI GGATC 2 cut(s) 285, 298
BsrDI GCAATG 1 cut(s) 64
BsrI ACTGG 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 322
BssHII GCGCGC 1 cut(s) 306
BssMI GATC 2 cut(s) 57, 290
BssT1I CCWWGG 1 cut(s) 322
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 5 cut(s) 121, 423, 515, 766, 778
Bst6I CTCTTC 1 cut(s) 804
BstC8I GCNNGC 3 cut(s) 308, 317, 386
BstDEI CTNAG 2 cut(s) 47, 207
BstF5I GGATG 3 cut(s) 267, 580, 690
BstFNI CGCG 3 cut(s) 308, 315, 384
BstHHI GCGC 2 cut(s) 308, 310
BstKTI GATC 2 cut(s) 60, 293
BstMBI GATC 2 cut(s) 57, 290
BstMCI CGRYCG 1 cut(s) 543
BstMWI GCNNNNNNNGC 2 cut(s) 312, 316
BstNI CCWGG 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 252
BstUI CGCG 3 cut(s) 308, 315, 384
BstV1I GCAGC 1 cut(s) 603
BstV2I GAAGAC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BstZI CGGCCG 1 cut(s) 540
BsuRI GGCC 3 cut(s) 327, 542, 732
BtgZI GCGATG 1 cut(s) 837
BtsCI GGATG 3 cut(s) 267, 580, 690
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 4 cut(s) 44, 419, 471, 774
BveI ACCTGC 1 cut(s) 342
Cac8I GCNNGC 3 cut(s) 308, 317, 386
CaiI CAGNNNCTG 1 cut(s) 776
CfoI GCGC 2 cut(s) 308, 310
Cfr13I GGNCC 3 cut(s) 448, 461, 730
CseI GACGC 1 cut(s) 396
Csp6I GTAC 1 cut(s) 760
CviQI GTAC 1 cut(s) 760
DdeI CTNAG 2 cut(s) 47, 207
DpnI GATC 2 cut(s) 59, 292
DpnII GATC 2 cut(s) 57, 290
EaeI YGGCCR 1 cut(s) 540
EagI CGGCCG 1 cut(s) 540
Eam1104I CTCTTC 1 cut(s) 804
EarI CTCTTC 1 cut(s) 804
EciI GGCGGA 5 cut(s) 16, 152, 217, 283, 569
EclXI CGGCCG 1 cut(s) 540
Eco130I CCWWGG 1 cut(s) 322
Eco147I AGGCCT 1 cut(s) 327
Eco24I GRGCYC 1 cut(s) 321
Eco47I GGWCC 2 cut(s) 448, 461
Eco52I CGGCCG 1 cut(s) 540
EcoRII CCWGG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 322
FaiI YATR 2 cut(s) 651, 791
FaqI GGGAC 2 cut(s) 434, 447
FauI CCCGC 3 cut(s) 308, 340, 587
Fnu4HI GCNGC 2 cut(s) 336, 592
FokI GGATG 3 cut(s) 254, 587, 697
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 2 cut(s) 336, 592
FspBI CTAG 2 cut(s) 533, 581
GlaI GCGC 2 cut(s) 307, 309
GluI GCNGC 2 cut(s) 336, 592
GsaI CCCAGC 1 cut(s) 134
HaeIII GGCC 3 cut(s) 327, 542, 732
HapII CCGG 3 cut(s) 348, 427, 539
HgaI GACGC 1 cut(s) 396
HhaI GCGC 2 cut(s) 308, 310
Hin6I GCGC 2 cut(s) 306, 308
HinP1I GCGC 2 cut(s) 306, 308
HinfI GANTC 1 cut(s) 557
HpaII CCGG 3 cut(s) 348, 427, 539
HphI GGTGA 2 cut(s) 28, 815
Hpy166II GTNNAC 3 cut(s) 343, 378, 762
Hpy188I TCNGA 2 cut(s) 498, 694
Hpy188III TCNNGA 1 cut(s) 572
Hpy8I GTNNAC 3 cut(s) 343, 378, 762
Hpy99I CGWCG 3 cut(s) 152, 412, 548
HpyCH4III ACNGT 5 cut(s) 121, 423, 515, 766, 778
HpyCH4V TGCA 2 cut(s) 400, 789
HpyF10VI GCNNNNNNNGC 2 cut(s) 312, 316
HpyF3I CTNAG 2 cut(s) 47, 207
HspAI GCGC 2 cut(s) 306, 308
Kzo9I GATC 2 cut(s) 57, 290
LmnI GCTCC 4 cut(s) 324, 528, 541, 588
Lsp1109I GCAGC 1 cut(s) 603
LweI GCATC 2 cut(s) 387, 565
MaeI CTAG 2 cut(s) 533, 581
MaeIII GTNAC 2 cut(s) 515, 772
MalI GATC 2 cut(s) 59, 292
MboI GATC 2 cut(s) 57, 290
MboII GAAGA 5 cut(s) 73, 241, 356, 821, 854
MfeI CAATTG 1 cut(s) 837
MflI RGATCY 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 4 cut(s) 563, 675, 706, 837
MluI ACGCGT 1 cut(s) 382
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 1 cut(s) 672
MseI TTAA 2 cut(s) 141, 705
MslI CAYNNNNRTG 1 cut(s) 383
MspA1I CMGCKG 2 cut(s) 338, 594
MspI CCGG 3 cut(s) 348, 427, 539
MspR9I CCNGG 1 cut(s) 254
MunI CAATTG 1 cut(s) 837
MvaI CCWGG 1 cut(s) 254
MvnI CGCG 3 cut(s) 308, 315, 384
MwoI GCNNNNNNNGC 2 cut(s) 312, 316
NdeII GATC 2 cut(s) 57, 290
NlaIV GGNNCC 5 cut(s) 292, 320, 450, 463, 530
NmuCI GTSAC 2 cut(s) 515, 772
OliI CACNNNNGTG 1 cut(s) 383
PauI GCGCGC 1 cut(s) 306
PceI AGGCCT 1 cut(s) 327
PkrI GCNGC 2 cut(s) 337, 593
PleI GAGTC 1 cut(s) 565
PpsI GAGTC 1 cut(s) 565
Psp6I CCWGG 1 cut(s) 252
PspFI CCCAGC 1 cut(s) 130
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 5 cut(s) 292, 320, 450, 463, 530
PspPI GGNCC 3 cut(s) 448, 461, 730
PstNI CAGNNNCTG 1 cut(s) 776
PsuI RGATCY 1 cut(s) 290
PteI GCGCGC 1 cut(s) 306
RsaI GTAC 1 cut(s) 761
RsaNI GTAC 1 cut(s) 760
RseI CAYNNNNRTG 1 cut(s) 383
SaqAI TTAA 2 cut(s) 141, 705
SatI GCNGC 2 cut(s) 336, 592
Sau3AI GATC 2 cut(s) 57, 290
Sau96I GGNCC 3 cut(s) 448, 461, 730
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 1 cut(s) 254
SduI GDGCHC 1 cut(s) 321
SetI ASST 6 cut(s) 23, 114, 136, 356, 538, 796
SfaNI GCATC 2 cut(s) 387, 565
SinI GGWCC 2 cut(s) 448, 461
SmiMI CAYNNNNRTG 1 cut(s) 383
Sse9I AATT 4 cut(s) 563, 675, 706, 837
SseBI AGGCCT 1 cut(s) 327
SspMI CTAG 2 cut(s) 533, 581
StuI AGGCCT 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 252
StyI CCWWGG 1 cut(s) 322
TaaI ACNGT 5 cut(s) 121, 423, 515, 766, 778
TaqI TCGA 1 cut(s) 560
TasI AATT 4 cut(s) 563, 675, 706, 837
TauI GCSGC 1 cut(s) 338
Tru1I TTAA 2 cut(s) 141, 705
Tru9I TTAA 2 cut(s) 141, 705
TscAI CASTG 4 cut(s) 51, 426, 478, 781
TseFI GTSAC 2 cut(s) 515, 772
TseI GCWGC 1 cut(s) 591
Tsp45I GTSAC 2 cut(s) 515, 772
TspDTI ATGAA 3 cut(s) 701, 732, 822
TspRI CASTG 4 cut(s) 51, 426, 478, 781
VpaK11BI GGWCC 2 cut(s) 448, 461
XapI RAATTY 1 cut(s) 675
XcmI CCANNNNNNNNNTGG 2 cut(s) 238, 667
XspI CTAG 2 cut(s) 533, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.