Prupe.3G236700_v2.0.a1

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Forward (+)
23190079 .. 23192680
2602 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G236700.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 963 bp
ATGATCAAAATAATCAAAGGAGTCCGATCCGCTCAGCTTCTCGATGTCGATGAAGGAATCAAACGCACATATGACATGAAAGTGACAAGTCACCGAATCTATGAATTTCTACGTTATATGTCCAAAACGACGAGGTTTTTTACTGATGTAAAAGAAATTAAAAGTTGGGTGCGTACAGCGATCTTCCAAGCTGTAGAACGAGGGCATGTGGCGTTTATTTCTCATATATGTGCTGACAATTCAAACCTCTGGCGTATCACTGATTCAAAAGGCAGGACCATTTTTCACTTTGCAATTGAACGTCGTCAAGCACGGGTTTATAGTCTTATATATCTGCTCCATGAAAACAAGAGAGAGCTTATAGCAGGTGCTGTTGATAAGCTTGGAAACACACTGCTAGATTTAGCAGTTAGTTTCTCCCCTTCTACACTGAAGGTTCAAGGTGCAGCTGTACAAATGAAAAGTGAAATAGAATGGTTCAAGTTGACAACTGAGTCTCACTGTCAAGTTGTAGGTGCTCTCATAGTTACCATCATGTTCGCTGCAGCCTTTACAGTTCCTGGTGGAAACAATCAGAACTCAGGTTTTCCCATAATTTTTATAGTTTCAGATGCTATCTCCCTATTTTCTTCCACGACTTCAGTAATGATATTCTTAGGAATCCTCACATCACGTTATGCCCAGGACGATTTCCTCAAATCCCTACGCACAAAAATGTTGTTAGGCCTTCTCACTCTTTTTCTGTCTATCGTCACCATGATGATTGCCTTTTATTGTTCTCTCATCATTTTGCTTCATGGAAAATTTAGGATTATTCTTCCACTTATTCTGCTTTCTAGTTTTCCAATTACCACATTTTTATGGATGCAATTCCCCTTCCTTGTTAAGAGTTTCAATTCTACTTATCGAGGGGAATTATTTTCCAGGCAAATTTGGTTAGGTCAATTAAAATTCCTTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 DUF4219 PGG

Protein Analysis

321

Amino Acids

36.5

Weight (kDa)

9.82

Isoelectric Point (pI)

31.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 356
AasI GACNNNNNNGTC 1 cut(s) 493
Acc36I ACCTGC 1 cut(s) 356
AccBSI CCGCTC 1 cut(s) 32
AciI CCGC 1 cut(s) 30
AclWI GGATC 1 cut(s) 21
AcsI RAATTY 4 cut(s) 104, 803, 930, 950
AcuI CTGAAG 2 cut(s) 452, 624
AfaI GTAC 2 cut(s) 175, 453
AgsI TTSAA 6 cut(s) 243, 267, 299, 440, 481, 895
AjnI CCWGG 3 cut(s) 559, 681, 923
AluBI AGCT 5 cut(s) 37, 191, 358, 382, 449
AluI AGCT 5 cut(s) 37, 191, 358, 382, 449
Alw21I GWGCWC 1 cut(s) 520
Alw26I GTCTC 1 cut(s) 501
AlwI GGATC 1 cut(s) 21
AlwNI CAGNNNCTG 2 cut(s) 371, 560
AoxI GGCC 1 cut(s) 724
ApeKI GCWGC 3 cut(s) 446, 542, 545
ApoI RAATTY 4 cut(s) 104, 803, 930, 950
AspS9I GGNCC 1 cut(s) 276
AsuHPI GGTGA 2 cut(s) 83, 745
AvaII GGWCC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 520
BbvI GCAGC 3 cut(s) 458, 529, 557
BccI CCATC 1 cut(s) 539
BciT130I CCWGG 3 cut(s) 561, 683, 925
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 2 cut(s) 398, 837
BfmI CTRYAG 2 cut(s) 192, 543
BfuAI ACCTGC 1 cut(s) 356
BisI GCNGC 3 cut(s) 447, 543, 546
BlpI GCTNAGC 1 cut(s) 33
BlsI GCNGC 3 cut(s) 448, 544, 547
Bme1390I CCNGG 3 cut(s) 561, 683, 925
Bme18I GGWCC 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 276
BmrFI CCNGG 3 cut(s) 561, 683, 925
BmsI GCATC 2 cut(s) 601, 855
Bpu1102I GCTNAGC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 681
BseBI CCWGG 3 cut(s) 561, 683, 925
BseDI CCNNGG 1 cut(s) 681
BseGI GGATG 1 cut(s) 870
BseMII CTCAG 3 cut(s) 47, 483, 594
BseXI GCAGC 3 cut(s) 458, 529, 557
BsgI GTGCAG 1 cut(s) 465
BshFI GGCC 1 cut(s) 726
BsiHKAI GWGCWC 1 cut(s) 520
BsmAI GTCTC 1 cut(s) 501
BsnI GGCC 1 cut(s) 726
Bsp1286I GDGCHC 1 cut(s) 520
Bsp1407I TGTACA 1 cut(s) 451
Bsp143I GATC 3 cut(s) 3, 26, 180
Bsp1720I GCTNAGC 1 cut(s) 33
BspACI CCGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 726
BspCNI CTCAG 3 cut(s) 46, 484, 593
BspMAI CTGCAG 1 cut(s) 547
BspMI ACCTGC 1 cut(s) 356
BspPI GGATC 1 cut(s) 21
BsrBI CCGCTC 1 cut(s) 32
BsrGI TGTACA 1 cut(s) 451
BssECI CCNNGG 1 cut(s) 681
BssMI GATC 3 cut(s) 3, 26, 180
Bst2UI CCWGG 3 cut(s) 561, 683, 925
Bst4CI ACNGT 2 cut(s) 503, 556
BstAUI TGTACA 1 cut(s) 451
BstDEI CTNAG 4 cut(s) 33, 492, 580, 655
BstF5I GGATG 1 cut(s) 870
BstKTI GATC 3 cut(s) 6, 29, 183
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 3 cut(s) 3, 26, 180
BstNI CCWGG 3 cut(s) 561, 683, 925
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 3 cut(s) 559, 681, 923
BstSFI CTRYAG 2 cut(s) 192, 543
BstV1I GCAGC 3 cut(s) 458, 529, 557
BsuRI GGCC 1 cut(s) 726
BtsCI GGATG 1 cut(s) 870
BtsI GCAGTG 1 cut(s) 392
BtsIMutI CAGTG 4 cut(s) 258, 392, 428, 499
BveI ACCTGC 1 cut(s) 356
CaiI CAGNNNCTG 2 cut(s) 371, 560
Cfr13I GGNCC 1 cut(s) 276
Csp6I GTAC 2 cut(s) 174, 452
CviAII CATG 6 cut(s) 76, 206, 341, 535, 757, 797
CviJI RGCY 7 cut(s) 37, 191, 358, 382, 449, 548, 726
CviKI_1 RGCY 7 cut(s) 37, 191, 358, 382, 449, 548, 726
CviQI GTAC 2 cut(s) 174, 452
DdeI CTNAG 4 cut(s) 33, 492, 580, 655
DpnI GATC 3 cut(s) 5, 28, 182
DpnII GATC 3 cut(s) 3, 26, 180
DrdI GACNNNNNNGTC 1 cut(s) 493
DseDI GACNNNNNNGTC 1 cut(s) 493
Eco147I AGGCCT 1 cut(s) 726
Eco47I GGWCC 1 cut(s) 276
Eco57I CTGAAG 2 cut(s) 452, 624
EcoRII CCWGG 3 cut(s) 559, 681, 923
FaeI CATG 6 cut(s) 79, 209, 344, 538, 760, 800
FatI CATG 6 cut(s) 75, 205, 340, 534, 756, 796
FauNDI CATATG 1 cut(s) 70
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 447, 543, 546
FokI GGATG 1 cut(s) 877
Fsp4HI GCNGC 3 cut(s) 447, 543, 546
FspBI CTAG 2 cut(s) 398, 837
GluI GCNGC 3 cut(s) 447, 543, 546
HaeIII GGCC 1 cut(s) 726
Hin1II CATG 6 cut(s) 79, 209, 344, 538, 760, 800
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 6 cut(s) 21, 57, 96, 263, 494, 660
HphI GGTGA 2 cut(s) 83, 745
Hpy166II GTNNAC 1 cut(s) 486
Hpy188I TCNGA 3 cut(s) 26, 576, 610
Hpy188III TCNNGA 1 cut(s) 41
Hpy8I GTNNAC 1 cut(s) 486
Hpy99I CGWCG 2 cut(s) 133, 306
HpyAV CCTTC 5 cut(s) 47, 427, 432, 737, 886
HpyCH4III ACNGT 2 cut(s) 503, 556
HpyCH4IV ACGT 3 cut(s) 112, 301, 673
HpyCH4V TGCA 4 cut(s) 293, 446, 545, 868
HpyF3I CTNAG 4 cut(s) 33, 492, 580, 655
HpySE526I ACGT 3 cut(s) 112, 301, 673
Hsp92II CATG 6 cut(s) 79, 209, 344, 538, 760, 800
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 26, 180
LmnI GCTCC 1 cut(s) 342
Lsp1109I GCAGC 3 cut(s) 458, 529, 557
LweI GCATC 2 cut(s) 601, 855
MaeI CTAG 2 cut(s) 398, 837
MaeII ACGT 3 cut(s) 112, 301, 673
MaeIII GTNAC 4 cut(s) 82, 89, 526, 751
MalI GATC 3 cut(s) 5, 28, 182
MbiI CCGCTC 1 cut(s) 32
MboI GATC 3 cut(s) 3, 26, 180
MboII GAAGA 3 cut(s) 175, 621, 809
MfeI CAATTG 1 cut(s) 294
MhlI GDGCHC 1 cut(s) 520
MlyI GAGTC 2 cut(s) 30, 503
MnlI CCTC 6 cut(s) 126, 194, 257, 674, 704, 902
MseI TTAA 3 cut(s) 159, 885, 947
MslI CAYNNNNRTG 5 cut(s) 80, 228, 713, 758, 859
MspA1I CMGCKG 1 cut(s) 449
MspR9I CCNGG 3 cut(s) 561, 683, 925
MunI CAATTG 1 cut(s) 294
MvaI CCWGG 3 cut(s) 561, 683, 925
NdeI CATATG 1 cut(s) 70
NdeII GATC 3 cut(s) 3, 26, 180
NlaIII CATG 6 cut(s) 79, 209, 344, 538, 760, 800
NmuCI GTSAC 3 cut(s) 82, 89, 751
NspI RCATGY 1 cut(s) 209
PaqCI CACCTGC 1 cut(s) 356
PceI AGGCCT 1 cut(s) 726
PfeI GAWTC 4 cut(s) 57, 96, 263, 660
PkrI GCNGC 3 cut(s) 448, 544, 547
PleI GAGTC 2 cut(s) 29, 502
PpsI GAGTC 2 cut(s) 29, 502
Psp6I CCWGG 3 cut(s) 559, 681, 923
PspGI CCWGG 3 cut(s) 559, 681, 923
PspPI GGNCC 1 cut(s) 276
PstI CTGCAG 1 cut(s) 547
PstNI CAGNNNCTG 2 cut(s) 371, 560
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 2 cut(s) 175, 453
RsaNI GTAC 2 cut(s) 174, 452
RseI CAYNNNNRTG 5 cut(s) 80, 228, 713, 758, 859
SaqAI TTAA 3 cut(s) 159, 885, 947
SatI GCNGC 3 cut(s) 447, 543, 546
Sau3AI GATC 3 cut(s) 3, 26, 180
Sau96I GGNCC 1 cut(s) 276
SchI GAGTC 2 cut(s) 30, 503
ScrFI CCNGG 3 cut(s) 561, 683, 925
SduI GDGCHC 1 cut(s) 520
SfaNI GCATC 2 cut(s) 601, 855
SfcI CTRYAG 2 cut(s) 192, 543
SinI GGWCC 1 cut(s) 276
SmiMI CAYNNNNRTG 5 cut(s) 80, 228, 713, 758, 859
SseBI AGGCCT 1 cut(s) 726
SsiI CCGC 1 cut(s) 30
SspMI CTAG 2 cut(s) 398, 837
StuI AGGCCT 1 cut(s) 726
StyD4I CCNGG 3 cut(s) 559, 681, 923
TaaI ACNGT 2 cut(s) 503, 556
TaiI ACGT 3 cut(s) 115, 304, 676
TaqI TCGA 3 cut(s) 42, 48, 907
TatI WGTACW 1 cut(s) 451
TfiI GAWTC 4 cut(s) 57, 96, 263, 660
Tru1I TTAA 3 cut(s) 159, 885, 947
Tru9I TTAA 3 cut(s) 159, 885, 947
TscAI CASTG 4 cut(s) 265, 399, 435, 506
TseFI GTSAC 3 cut(s) 82, 89, 751
TseI GCWGC 3 cut(s) 446, 542, 545
Tsp45I GTSAC 3 cut(s) 82, 89, 751
TspDTI ATGAA 6 cut(s) 66, 92, 117, 357, 473, 785
TspRI CASTG 4 cut(s) 265, 399, 435, 506
VpaK11BI GGWCC 1 cut(s) 276
XapI RAATTY 4 cut(s) 104, 803, 930, 950
XceI RCATGY 1 cut(s) 209
XspI CTAG 2 cut(s) 398, 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.