Prupe.3G245200_v2.0.a1

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Forward (+)
23696122 .. 23696833
712 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G245200.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 249 bp
ATGAGGAATTATATTGAGAAGCTTCCCCTTAGAGATCAAGGCGACTCGGCCTTGTTTGTATTGGGGGCCCCGGATGACCAAGGGAAATTAGCAACAGTTTACAAGTCCGAAAAGAGGAATGAGATGGTGAAAGAGGGATACAGAATTCTTGGCAACTCTGGAGACCAGTGGAGTGACATACTAGGTACCTCAATCTCAATGTCCATCCGCCCATTCAAGCTTCCGAATCCAATGTATTATATTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

83

Amino Acids

9.33

Weight (kDa)

7.96

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 185
AccB1I GGYRCC 1 cut(s) 185
AciI CCGC 1 cut(s) 208
AcsI RAATTY 1 cut(s) 144
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 1 cut(s) 217
AluBI AGCT 2 cut(s) 22, 220
AluI AGCT 2 cut(s) 22, 220
Alw26I GTCTC 1 cut(s) 156
AoxI GGCC 2 cut(s) 48, 66
ApaI GGGCCC 1 cut(s) 70
ApoI RAATTY 1 cut(s) 144
Asp718I GGTACC 1 cut(s) 185
AspS9I GGNCC 2 cut(s) 66, 67
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 139
BaeGI GKGCMC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 70
BccI CCATC 2 cut(s) 118, 212
BciVI GTATCC 1 cut(s) 131
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 1 cut(s) 182
BfuI GTATCC 1 cut(s) 131
Bme1390I CCNGG 1 cut(s) 71
BmgT120I GGNCC 2 cut(s) 66, 67
BmiI GGNNCC 4 cut(s) 67, 68, 69, 187
BmrFI CCNGG 1 cut(s) 71
BpmI CTGGAG 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 69, 79
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 166
BseDI CCNNGG 2 cut(s) 69, 79
BseGI GGATG 2 cut(s) 79, 204
BseLI CCNNNNNNNGG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 166
BseSI GKGCMC 1 cut(s) 70
BshFI GGCC 2 cut(s) 50, 68
BshNI GGYRCC 1 cut(s) 185
BsiSI CCGG 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 156
BsnI GGCC 2 cut(s) 50, 68
Bso31I GGTCTC 1 cut(s) 156
Bsp120I GGGCCC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 1 cut(s) 208
BspANI GGCC 2 cut(s) 50, 68
BspLI GGNNCC 4 cut(s) 67, 68, 69, 187
BspT107I GGYRCC 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 156
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 2 cut(s) 69, 79
BssMI GATC 1 cut(s) 34
BssT1I CCWWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 29
BstF5I GGATG 2 cut(s) 79, 204
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 69
BstSLI GKGCMC 1 cut(s) 70
BsuI GTATCC 1 cut(s) 131
BsuRI GGCC 2 cut(s) 50, 68
BtsCI GGATG 2 cut(s) 79, 204
BtsIMutI CAGTG 1 cut(s) 173
Cfr13I GGNCC 2 cut(s) 66, 67
Csp6I GTAC 1 cut(s) 186
CviAII CATG 1 cut(s) 246
CviJI RGCY 4 cut(s) 22, 50, 68, 220
CviKI_1 RGCY 4 cut(s) 22, 50, 68, 220
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 1 cut(s) 29
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
EciI GGCGGA 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 156
EcoO109I RGGNCCY 2 cut(s) 66, 67
EcoRI GAATTC 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 1 cut(s) 249
FaiI YATR 4 cut(s) 12, 179, 240, 247
FatI CATG 1 cut(s) 245
FokI GGATG 2 cut(s) 86, 191
FriOI GRGCYC 1 cut(s) 70
FspBI CTAG 1 cut(s) 182
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 2 cut(s) 50, 68
HapII CCGG 1 cut(s) 71
Hin1II CATG 1 cut(s) 249
HindIII AAGCTT 2 cut(s) 20, 218
HinfI GANTC 2 cut(s) 44, 226
HpaII CCGG 1 cut(s) 71
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 109, 225
Hpy188III TCNNGA 1 cut(s) 159
Hpy8I GTNNAC 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 97
HpyF3I CTNAG 1 cut(s) 29
Hsp92II CATG 1 cut(s) 249
KpnI GGTACC 1 cut(s) 189
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 3 cut(s) 84, 144, 179
MaeI CTAG 1 cut(s) 182
MaeIII GTNAC 1 cut(s) 173
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 3 cut(s) 7, 86, 144
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 3 cut(s) 108, 127, 199
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 71
NciI CCSGG 1 cut(s) 71
NdeII GATC 1 cut(s) 34
NlaIII CATG 1 cut(s) 249
NlaIV GGNNCC 4 cut(s) 67, 68, 69, 187
NmeAIII GCCGAG 1 cut(s) 26
NmuCI GTSAC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 226
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
PspN4I GGNNCC 4 cut(s) 67, 68, 69, 187
PspOMI GGGCCC 1 cut(s) 66
PspPI GGNCC 2 cut(s) 66, 67
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 2 cut(s) 66, 67
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 1 cut(s) 70
SetI ASST 4 cut(s) 24, 187, 191, 222
Sse9I AATT 3 cut(s) 7, 86, 144
SsiI CCGC 1 cut(s) 208
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 69
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 97
TasI AATT 3 cut(s) 7, 86, 144
TfiI GAWTC 1 cut(s) 226
TscAI CASTG 1 cut(s) 173
TseFI GTSAC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 173
TspRI CASTG 1 cut(s) 173
XapI RAATTY 1 cut(s) 144
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.