Prupe.3G249700_v2.0.a1

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Forward (+)
23979126 .. 23980343
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G249700.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1218 bp
ATGTATCCATCATCATCTTCTTCTTTTTTGTCATCGTCGTCACCACCTCTTGAAGCCTTAAAGCCAGAAGAAAGAGGGTTACATCTAATCCAACTCCTCATCAAGTGTGCTAACCATGCAGCATCCCGCAACCTCAATCTAGCTGATGAATGTCTTTGCCAAATCTCACGACTTGCGTCCTTGCATGGCGATTCCATGCAAAGGCTTGCTGCCCGGTTTGCCTCTGCTCTCGCGTTCCGTCTTGTCAAGAATTGGCCCGGCATCCACAAGGCCCTAAACTGTGACACCAAACGGCCTAAACTAGAGTTGGACCGGGCTCGCGTCATCTTCACAAAGGCCTTCCCTTATCTCAGTTTTGCCTATGCCATCATCGCCCGAACCTTGCTCCAAGCCATGTCCGCCGAGCGGGTAATCCACATTGTGGACTTGGGTTCTGCGGACCTAAAACTATGGGCTCCACTTTTGCAGAGCTTCGCAGCTTTGCCAGATGGGCCTCCCCATTTGAAAATCACTTGTGTAAATAGCAATAAAGCTGTCTTGGAGAAGTTGGGCCCAAAGCTTGTAAAAGAGGCAGAGGCCTTCGACATGCCATTCCAATACAACCCACTAAATGTTAGCCTAAGAGAGTTGACAAAAGACATGCTTAAGGTAAGGTCAGGAGAAGCATTGGGTTTTGTCTCAATTCTCAATCTACATGTCTTATTGGCCCAAGATGACCAAGCGGACGCACAATTTAGGCCCAAAAAGAGCAATATTGATGTCAAGGATTGTAAGCAAATGGGTGAGTTTTTAGGCATGGTAAGGTCAATGTCCCCAAAAGTGGTGTTGTTGGTAGAACAAGAAGCTCACCATAATTTGAACCATTTGGTGGACAGATTCATTGAGGGCTTGCACTATTATAGCGCAATGTTTGATTCATTAGAGGCCAGCTTTGGGGGCTTGTCTTCATCAAGTGAAGAACGCTTCGTTTTGGAGGAGATGTTTGGGAGAGAGATTGAAAACATTGTGGCTTGGGAGGGTGTGGAGAGAGAAGAGAGGCATGAGAGATATGCATGGTGGATGGTTAGGTTTTGTGAAGTTGGGTTCAAACCTGTGCGCTTGTGGTTGGATTCTATGGAGGATTCAAAGAAGGGTTACAAGATTATTAGCCATGGAACAAGTTTGATGATTTGTTGGAACGAAAGGCCTCTCTATGCTGTTTCTGCTTGGACTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

406

Amino Acids

45.83

Weight (kDa)

7.2

Isoelectric Point (pI)

49.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 421, 868
AccBSI CCGCTC 1 cut(s) 406
AccII CGCG 2 cut(s) 233, 321
AciI CCGC 5 cut(s) 127, 399, 406, 437, 722
AdeI CACNNNGTG 1 cut(s) 421
AfiI CCNNNNNNNGG 6 cut(s) 201, 405, 421, 820, 868, 933
AflII CTTAAG 1 cut(s) 644
AflIII ACRYGT 1 cut(s) 694
AgsI TTSAA 6 cut(s) 53, 505, 859, 998, 1087, 1125
AluBI AGCT 7 cut(s) 143, 471, 479, 533, 559, 845, 930
AluI AGCT 7 cut(s) 143, 471, 479, 533, 559, 845, 930
Alw26I GTCTC 1 cut(s) 682
ApaI GGGCCC 1 cut(s) 554
ApeKI GCWGC 3 cut(s) 119, 209, 476
AspLEI GCGC 2 cut(s) 905, 1098
AspS9I GGNCC 9 cut(s) 255, 271, 310, 439, 491, 550, 551, 706, 738
AsuC2I CCSGG 3 cut(s) 214, 258, 314
AsuHPI GGTGA 3 cut(s) 33, 794, 839
AvaII GGWCC 2 cut(s) 310, 439
BaeGI GKGCMC 1 cut(s) 554
BanII GRGCYC 3 cut(s) 319, 457, 554
BbsI GAAGAC 1 cut(s) 936
BbvI GCAGC 3 cut(s) 131, 196, 488
BccI CCATC 4 cut(s) 16, 374, 482, 1054
BceAI ACGGC 1 cut(s) 308
BciVI GTATCC 1 cut(s) 15
BcnI CCSGG 3 cut(s) 214, 258, 314
BcoDI GTCTC 1 cut(s) 682
BfaI CTAG 2 cut(s) 140, 302
BfrI CTTAAG 1 cut(s) 644
BfuI GTATCC 1 cut(s) 15
BglI GCCNNNNNGGC 1 cut(s) 490
BisI GCNGC 3 cut(s) 120, 210, 477
BlsI GCNGC 3 cut(s) 121, 211, 478
Bme1390I CCNGG 3 cut(s) 214, 258, 314
Bme18I GGWCC 2 cut(s) 310, 439
BmgT120I GGNCC 9 cut(s) 255, 271, 310, 439, 491, 550, 551, 706, 738
BmiI GGNNCC 2 cut(s) 456, 552
BmrFI CCNGG 3 cut(s) 214, 258, 314
BmsI GCATC 2 cut(s) 131, 270
BoxI GACNNNNGTC 1 cut(s) 175
BpiI GAAGAC 1 cut(s) 936
BpuMI CCSGG 3 cut(s) 214, 258, 314
BsaJI CCNNGG 1 cut(s) 1150
BsaXI ACNNNNNCTCC 2 cut(s) 965, 995
Bsc4I CCNNNNNNNGG 6 cut(s) 201, 405, 421, 820, 868, 933
Bse3DI GCAATG 1 cut(s) 912
BseDI CCNNGG 1 cut(s) 1150
BseGI GGATG 3 cut(s) 122, 261, 1065
BseLI CCNNNNNNNGG 6 cut(s) 201, 405, 421, 820, 868, 933
BseMI GCAATG 1 cut(s) 912
BseMII CTCAG 1 cut(s) 364
BseRI GAGGAG 2 cut(s) 86, 989
BseSI GKGCMC 1 cut(s) 554
BseXI GCAGC 3 cut(s) 131, 196, 488
Bsh1236I CGCG 2 cut(s) 233, 321
BsiSI CCGG 3 cut(s) 214, 258, 313
BslFI GGGAC 1 cut(s) 796
BslI CCNNNNNNNGG 6 cut(s) 201, 405, 421, 820, 868, 933
BsmAI GTCTC 1 cut(s) 682
BsmFI GGGAC 1 cut(s) 796
Bsp120I GGGCCC 1 cut(s) 550
Bsp1286I GDGCHC 3 cut(s) 319, 457, 554
Bsp19I CCATGG 1 cut(s) 1150
BspACI CCGC 5 cut(s) 127, 399, 406, 437, 722
BspCNI CTCAG 1 cut(s) 363
BspFNI CGCG 2 cut(s) 233, 321
BspLI GGNNCC 2 cut(s) 456, 552
BspTI CTTAAG 1 cut(s) 644
BsrBI CCGCTC 1 cut(s) 406
BsrDI GCAATG 1 cut(s) 912
BssECI CCNNGG 1 cut(s) 1150
BssT1I CCWWGG 1 cut(s) 1150
Bst4CI ACNGT 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 1026
BstAFI CTTAAG 1 cut(s) 644
BstC8I GCNNGC 4 cut(s) 207, 319, 890, 928
BstDEI CTNAG 2 cut(s) 350, 620
BstDSI CCRYGG 1 cut(s) 1150
BstF5I GGATG 3 cut(s) 122, 261, 1065
BstFNI CGCG 2 cut(s) 233, 321
BstHHI GCGC 2 cut(s) 905, 1098
BstMAI GTCTC 1 cut(s) 682
BstMWI GCNNNNNNNGC 7 cut(s) 116, 218, 371, 398, 490, 936, 1202
BstNSI RCATGY 3 cut(s) 589, 643, 698
BstPAI GACNNNNGTC 1 cut(s) 175
BstSCI CCNGG 3 cut(s) 212, 256, 312
BstSLI GKGCMC 1 cut(s) 554
BstUI CGCG 2 cut(s) 233, 321
BstV1I GCAGC 3 cut(s) 131, 196, 488
BstV2I GAAGAC 1 cut(s) 936
BsuI GTATCC 1 cut(s) 15
BtgI CCRYGG 1 cut(s) 1150
BtgZI GCGATG 1 cut(s) 355
BtsCI GGATG 3 cut(s) 122, 261, 1065
Cac8I GCNNGC 4 cut(s) 207, 319, 890, 928
CfoI GCGC 2 cut(s) 905, 1098
Cfr13I GGNCC 9 cut(s) 255, 271, 310, 439, 491, 550, 551, 706, 738
CseI GACGC 3 cut(s) 165, 310, 734
DdeI CTNAG 2 cut(s) 350, 620
DraIII CACNNNGTG 1 cut(s) 421
Eam1104I CTCTTC 1 cut(s) 1026
EarI CTCTTC 1 cut(s) 1026
EciI GGCGGA 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 1150
Eco147I AGGCCT 3 cut(s) 338, 578, 1186
Eco24I GRGCYC 3 cut(s) 319, 457, 554
Eco47I GGWCC 2 cut(s) 310, 439
EcoO109I RGGNCCY 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 1150
EcoT22I ATGCAT 1 cut(s) 1054
EcoT38I GRGCYC 3 cut(s) 319, 457, 554
ErhI CCWWGG 1 cut(s) 1150
FalI AAGNNNNNCTT 2 cut(s) 627, 659
FaqI GGGAC 1 cut(s) 796
FauI CCCGC 2 cut(s) 134, 399
Fnu4HI GCNGC 3 cut(s) 120, 210, 477
FokI GGATG 3 cut(s) 109, 248, 1072
FriOI GRGCYC 3 cut(s) 319, 457, 554
Fsp4HI GCNGC 3 cut(s) 120, 210, 477
FspBI CTAG 2 cut(s) 140, 302
GlaI GCGC 2 cut(s) 904, 1097
GluI GCNGC 3 cut(s) 120, 210, 477
HapII CCGG 3 cut(s) 214, 258, 313
HgaI GACGC 3 cut(s) 165, 310, 734
HhaI GCGC 2 cut(s) 905, 1098
Hin6I GCGC 2 cut(s) 903, 1096
HinP1I GCGC 2 cut(s) 903, 1096
HincII GTYRAC 1 cut(s) 630
HindII GTYRAC 1 cut(s) 630
HindIII AAGCTT 1 cut(s) 557
HinfI GANTC 5 cut(s) 191, 876, 914, 1109, 1121
HpaII CCGG 3 cut(s) 214, 258, 313
HphI GGTGA 3 cut(s) 33, 794, 839
Hpy166II GTNNAC 3 cut(s) 424, 630, 871
Hpy188III TCNNGA 4 cut(s) 50, 168, 247, 657
Hpy8I GTNNAC 3 cut(s) 424, 630, 871
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 3 cut(s) 349, 589, 1123
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 6 cut(s) 119, 184, 199, 466, 892, 1052
HpyF10VI GCNNNNNNNGC 7 cut(s) 116, 218, 371, 398, 490, 936, 1202
HpyF3I CTNAG 2 cut(s) 350, 620
HspAI GCGC 2 cut(s) 903, 1096
LmnI GCTCC 2 cut(s) 390, 460
LpnPI CCDG 8 cut(s) 78, 227, 271, 326, 498, 642, 940, 1104
Lsp1109I GCAGC 3 cut(s) 131, 196, 488
LweI GCATC 2 cut(s) 131, 270
MaeI CTAG 2 cut(s) 140, 302
MaeIII GTNAC 4 cut(s) 39, 78, 281, 1133
MbiI CCGCTC 1 cut(s) 406
MboII GAAGA 7 cut(s) 9, 12, 80, 319, 936, 968, 1043
MhlI GDGCHC 3 cut(s) 319, 457, 554
MluCI AATT 4 cut(s) 250, 681, 731, 853
MmeI TCCRAC 4 cut(s) 115, 288, 1086, 1154
Mph1103I ATGCAT 1 cut(s) 1054
MseI TTAA 2 cut(s) 59, 645
MspCI CTTAAG 1 cut(s) 644
MspI CCGG 3 cut(s) 214, 258, 313
MspR9I CCNGG 3 cut(s) 214, 258, 314
MvnI CGCG 2 cut(s) 233, 321
MwoI GCNNNNNNNGC 7 cut(s) 116, 218, 371, 398, 490, 936, 1202
NciI CCSGG 3 cut(s) 214, 258, 314
NcoI CCATGG 1 cut(s) 1150
NlaIV GGNNCC 2 cut(s) 456, 552
NmeAIII GCCGAG 1 cut(s) 427
NmuCI GTSAC 2 cut(s) 39, 281
NsiI ATGCAT 1 cut(s) 1054
NspI RCATGY 3 cut(s) 589, 643, 698
PceI AGGCCT 3 cut(s) 338, 578, 1186
PciI ACATGT 1 cut(s) 694
PfeI GAWTC 5 cut(s) 191, 876, 914, 1109, 1121
PflMI CCANNNNNTGG 2 cut(s) 421, 868
PkrI GCNGC 3 cut(s) 121, 211, 478
PscI ACATGT 1 cut(s) 694
PshAI GACNNNNGTC 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 456, 552
PspOMI GGGCCC 1 cut(s) 550
PspPI GGNCC 9 cut(s) 255, 271, 310, 439, 491, 550, 551, 706, 738
SaqAI TTAA 2 cut(s) 59, 645
SatI GCNGC 3 cut(s) 120, 210, 477
Sau96I GGNCC 9 cut(s) 255, 271, 310, 439, 491, 550, 551, 706, 738
ScrFI CCNGG 3 cut(s) 214, 258, 314
SduI GDGCHC 3 cut(s) 319, 457, 554
SfaNI GCATC 2 cut(s) 131, 270
SinI GGWCC 2 cut(s) 310, 439
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
Sse9I AATT 4 cut(s) 250, 681, 731, 853
SseBI AGGCCT 3 cut(s) 338, 578, 1186
SsiI CCGC 5 cut(s) 127, 399, 406, 437, 722
SspI AATATT 1 cut(s) 754
SspMI CTAG 2 cut(s) 140, 302
StuI AGGCCT 3 cut(s) 338, 578, 1186
StyD4I CCNGG 3 cut(s) 212, 256, 312
StyI CCWWGG 1 cut(s) 1150
TaaI ACNGT 1 cut(s) 281
TaqI TCGA 1 cut(s) 582
TasI AATT 4 cut(s) 250, 681, 731, 853
TfiI GAWTC 5 cut(s) 191, 876, 914, 1109, 1121
Tru1I TTAA 2 cut(s) 59, 645
Tru9I TTAA 2 cut(s) 59, 645
TseFI GTSAC 2 cut(s) 39, 281
TseI GCWGC 3 cut(s) 119, 209, 476
Tsp45I GTSAC 2 cut(s) 39, 281
TspDTI ATGAA 4 cut(s) 162, 868, 906, 936
TspGWI ACGGA 1 cut(s) 227
Van91I CCANNNNNTGG 2 cut(s) 421, 868
Vha464I CTTAAG 1 cut(s) 644
VpaK11BI GGWCC 2 cut(s) 310, 439
XceI RCATGY 3 cut(s) 589, 643, 698
XspI CTAG 2 cut(s) 140, 302
Zsp2I ATGCAT 1 cut(s) 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.