Prupe.3G250500_v2.0.a1

cobra-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Reverse (-)
24019238 .. 24021075
1838 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G250500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 618 bp
ATGAACTATTCTGATTGGAACTTAGTTAATGGAGATTACTGTCAAATGTCACAACATGATGCCTATCCAAGCTTGCCAAAAATAGAGTCAAAGCTCTACTTTATTTCCATCTTTGTACTAGGAGTTGCGCTGCACTATCGACACATTCAAGCTCCTGGATGGTCAATTGGATGGACTTGGGTAAAGAAGGAAGCCATTTGGCCCATGCTTGGATCAGAAGCAACAAGGCGAGGGGAAAATTGTTCATCTCTTAAAGATGCAATCCCTCATAATTTGTCTTGGGTGCCAAATGGAGCCCTAGATGTAGGCTTTTTCACTATAACTATTGCTCAATCTGAAACCACTTACAAAGATGTGAGAGTTCCTAAAAATTTCACATTGAAAGCACCCGGTCCCGGCTATACATGCGGCTCCACAATGACGTGGAACATGGCATACACGTTTTCACCATTCATTGCTCGTGAAATGCCAACATGTTGCGTCTCTCTCTTCGCCTTTTACGATAGCAACATTGTGTCGTGCCCAACATCTTCATGTGGCTGCCGAAGTAATACAAGCAGCTCAGAAATATGTGCAGAAAAATTTAAAGCCCAAGTCCGACCCATGGATCGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002239 GO:0008150 GO:0009605 GO:0009607 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

206

Amino Acids

22.99

Weight (kDa)

8.05

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 283
AciI CCGC 1 cut(s) 408
AclWI GGATC 2 cut(s) 220, 615
AcsI RAATTY 2 cut(s) 370, 581
AfaI GTAC 1 cut(s) 117
AfiI CCNNNNNNNGG 4 cut(s) 209, 395, 604, 609
AflIII ACRYGT 2 cut(s) 438, 473
AgsI TTSAA 2 cut(s) 149, 382
AjiI CACGTC 1 cut(s) 423
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 4 cut(s) 72, 94, 152, 561
AluI AGCT 4 cut(s) 72, 94, 152, 561
Alw26I GTCTC 1 cut(s) 487
AlwI GGATC 2 cut(s) 220, 615
AoxI GGCC 1 cut(s) 200
ApeKI GCWGC 3 cut(s) 130, 540, 558
ApoI RAATTY 2 cut(s) 370, 581
ArsI GACNNNNNNTTYG 2 cut(s) 71, 103
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 2 cut(s) 201, 392
AsuC2I CCSGG 2 cut(s) 390, 396
AsuHPI GGTGA 1 cut(s) 438
AvaII GGWCC 1 cut(s) 392
BaeGI GKGCMC 1 cut(s) 524
BanI GGYRCC 1 cut(s) 283
BanII GRGCYC 1 cut(s) 298
BauI CACGAG 1 cut(s) 459
BbvI GCAGC 3 cut(s) 117, 527, 570
BccI CCATC 3 cut(s) 116, 153, 165
BciT130I CCWGG 1 cut(s) 156
BcnI CCSGG 2 cut(s) 390, 396
BcoDI GTCTC 1 cut(s) 487
BfaI CTAG 2 cut(s) 119, 299
BisI GCNGC 4 cut(s) 131, 409, 541, 559
BlsI GCNGC 4 cut(s) 132, 410, 542, 560
Bme1390I CCNGG 3 cut(s) 156, 390, 396
Bme18I GGWCC 1 cut(s) 392
BmgBI CACGTC 1 cut(s) 423
BmgT120I GGNCC 2 cut(s) 201, 392
BmiI GGNNCC 4 cut(s) 285, 295, 394, 412
BmrFI CCNGG 3 cut(s) 156, 390, 396
BmsI GCATC 2 cut(s) 49, 247
BpuMI CCSGG 2 cut(s) 390, 396
BsaBI GATNNNNATC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 603
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 395, 604, 609
Bse3DI GCAATG 1 cut(s) 453
Bse8I GATNNNNATC 1 cut(s) 63
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 603
BseGI GGATG 2 cut(s) 164, 176
BseJI GATNNNNATC 1 cut(s) 63
BseLI CCNNNNNNNGG 4 cut(s) 209, 395, 604, 609
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 1 cut(s) 576
BseSI GKGCMC 1 cut(s) 524
BseXI GCAGC 3 cut(s) 117, 527, 570
BsgI GTGCAG 2 cut(s) 116, 594
BshFI GGCC 1 cut(s) 202
BshNI GGYRCC 1 cut(s) 283
BsiSI CCGG 2 cut(s) 390, 396
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 4 cut(s) 209, 395, 604, 609
BsmAI GTCTC 1 cut(s) 487
BsmBI CGTCTC 1 cut(s) 487
BsmFI GGGAC 1 cut(s) 378
BsnI GGCC 1 cut(s) 202
Bsp1286I GDGCHC 2 cut(s) 298, 524
Bsp143I GATC 2 cut(s) 212, 607
Bsp19I CCATGG 1 cut(s) 603
BspACI CCGC 1 cut(s) 408
BspANI GGCC 1 cut(s) 202
BspCNI CTCAG 1 cut(s) 575
BspLI GGNNCC 4 cut(s) 285, 295, 394, 412
BspPI GGATC 2 cut(s) 220, 615
BspT107I GGYRCC 1 cut(s) 283
BsrDI GCAATG 1 cut(s) 453
BssECI CCNNGG 1 cut(s) 603
BssMI GATC 2 cut(s) 212, 607
BssSI CACGAG 1 cut(s) 459
BssT1I CCWWGG 1 cut(s) 603
Bst2BI CACGAG 1 cut(s) 459
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 41
Bst6I CTCTTC 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 2 cut(s) 22, 562
BstDSI CCRYGG 1 cut(s) 603
BstF5I GGATG 2 cut(s) 164, 176
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 2 cut(s) 215, 610
BstMAI GTCTC 1 cut(s) 487
BstMBI GATC 2 cut(s) 212, 607
BstMWI GCNNNNNNNGC 1 cut(s) 405
BstNI CCWGG 1 cut(s) 156
BstNSI RCATGY 2 cut(s) 408, 477
BstSCI CCNGG 3 cut(s) 154, 388, 394
BstSLI GKGCMC 1 cut(s) 524
BstV1I GCAGC 3 cut(s) 117, 527, 570
BsuRI GGCC 1 cut(s) 202
BtgI CCRYGG 1 cut(s) 603
BtrI CACGTC 1 cut(s) 423
BtsCI GGATG 2 cut(s) 164, 176
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 1 cut(s) 130
Cfr13I GGNCC 2 cut(s) 201, 392
CseI GACGC 1 cut(s) 469
Csp6I GTAC 1 cut(s) 116
CviAII CATG 7 cut(s) 56, 205, 405, 430, 474, 534, 604
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 2 cut(s) 22, 562
DpnI GATC 2 cut(s) 214, 609
DpnII GATC 2 cut(s) 212, 607
DraI TTTAAA 1 cut(s) 586
Eam1104I CTCTTC 1 cut(s) 494
EarI CTCTTC 1 cut(s) 494
Eco130I CCWWGG 1 cut(s) 603
Eco24I GRGCYC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 392
EcoRII CCWGG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 603
EcoT38I GRGCYC 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 603
Esp3I CGTCTC 1 cut(s) 487
FaeI CATG 7 cut(s) 59, 208, 408, 433, 477, 537, 607
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FaqI GGGAC 1 cut(s) 378
FatI CATG 7 cut(s) 55, 204, 404, 429, 473, 533, 603
Fnu4HI GCNGC 4 cut(s) 131, 409, 541, 559
FokI GGATG 2 cut(s) 171, 183
FriOI GRGCYC 1 cut(s) 298
Fsp4HI GCNGC 4 cut(s) 131, 409, 541, 559
FspBI CTAG 2 cut(s) 119, 299
GlaI GCGC 1 cut(s) 129
GluI GCNGC 4 cut(s) 131, 409, 541, 559
HaeIII GGCC 1 cut(s) 202
HapII CCGG 2 cut(s) 390, 396
HgaI GACGC 1 cut(s) 469
HhaI GCGC 1 cut(s) 130
Hin1II CATG 7 cut(s) 59, 208, 408, 433, 477, 537, 607
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 70
HinfI GANTC 1 cut(s) 86
HpaII CCGG 2 cut(s) 390, 396
HphI GGTGA 1 cut(s) 438
Hpy188I TCNGA 6 cut(s) 13, 217, 337, 565, 599, 612
Hpy188III TCNNGA 1 cut(s) 461
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4IV ACGT 2 cut(s) 422, 440
HpyCH4V TGCA 3 cut(s) 133, 260, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 405
HpyF3I CTNAG 2 cut(s) 22, 562
HpySE526I ACGT 2 cut(s) 422, 440
Hsp92II CATG 7 cut(s) 59, 208, 408, 433, 477, 537, 607
HspAI GCGC 1 cut(s) 128
Kzo9I GATC 2 cut(s) 212, 607
LmnI GCTCC 3 cut(s) 157, 293, 416
LpnPI CCDG 4 cut(s) 141, 168, 403, 409
Lsp1109I GCAGC 3 cut(s) 117, 527, 570
LweI GCATC 2 cut(s) 49, 247
MaeI CTAG 2 cut(s) 119, 299
MaeII ACGT 2 cut(s) 422, 440
MaeIII GTNAC 1 cut(s) 48
MalI GATC 2 cut(s) 214, 609
MboI GATC 2 cut(s) 212, 607
MboII GAAGA 2 cut(s) 481, 522
MfeI CAATTG 1 cut(s) 165
MhlI GDGCHC 2 cut(s) 298, 524
MluCI AATT 5 cut(s) 165, 238, 271, 370, 581
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 2 cut(s) 224, 276
MseI TTAA 3 cut(s) 27, 252, 585
MslI CAYNNNNRTG 1 cut(s) 532
MspI CCGG 2 cut(s) 390, 396
MspR9I CCNGG 3 cut(s) 156, 390, 396
MunI CAATTG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 405
NciI CCSGG 2 cut(s) 390, 396
NcoI CCATGG 1 cut(s) 603
NdeII GATC 2 cut(s) 212, 607
NlaIII CATG 7 cut(s) 59, 208, 408, 433, 477, 537, 607
NlaIV GGNNCC 4 cut(s) 285, 295, 394, 412
NmuCI GTSAC 1 cut(s) 48
NspI RCATGY 2 cut(s) 408, 477
PciI ACATGT 1 cut(s) 473
PcsI WCGNNNNNNNCGW 1 cut(s) 498
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 4 cut(s) 132, 410, 542, 560
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PscI ACATGT 1 cut(s) 473
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 4 cut(s) 285, 295, 394, 412
PspPI GGNCC 2 cut(s) 201, 392
PsrI GAACNNNNNNTAC 2 cut(s) 419, 451
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 532
SaqAI TTAA 3 cut(s) 27, 252, 585
SatI GCNGC 4 cut(s) 131, 409, 541, 559
Sau3AI GATC 2 cut(s) 212, 607
Sau96I GGNCC 2 cut(s) 201, 392
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 3 cut(s) 156, 390, 396
SduI GDGCHC 2 cut(s) 298, 524
SetI ASST 6 cut(s) 74, 96, 154, 425, 443, 563
SfaNI GCATC 2 cut(s) 49, 247
SinI GGWCC 1 cut(s) 392
SmiMI CAYNNNNRTG 1 cut(s) 532
Sse9I AATT 5 cut(s) 165, 238, 271, 370, 581
SsiI CCGC 1 cut(s) 408
SspMI CTAG 2 cut(s) 119, 299
StyD4I CCNGG 3 cut(s) 154, 388, 394
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 1 cut(s) 41
TaiI ACGT 2 cut(s) 425, 443
TaqI TCGA 1 cut(s) 139
TasI AATT 5 cut(s) 165, 238, 271, 370, 581
TatI WGTACW 1 cut(s) 115
TauI GCSGC 1 cut(s) 411
Tru1I TTAA 3 cut(s) 27, 252, 585
Tru9I TTAA 3 cut(s) 27, 252, 585
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 3 cut(s) 130, 540, 558
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 4 cut(s) 17, 234, 442, 522
VpaK11BI GGWCC 1 cut(s) 392
XapI RAATTY 2 cut(s) 370, 581
XceI RCATGY 2 cut(s) 408, 477
XspI CTAG 2 cut(s) 119, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.