Prupe.3G265000_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Reverse (-)
24905641 .. 24906647
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G265000.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 831 bp
ATGATATATAGTTTCTGCATTGAATTTGAGTTTGGGCTCCCACCAATAGGAGATGAAGGCGTGAAACGAACAATTAAAAGAGGGGCAACCTGTGACGATCAGAAAGAGGCCAAACGACAGGATCGCCAACCGTCACCAACGGTCAAGCCTCTGGAACAATGTACCAACCTTGGAGCTCTCAAGCAAGTCCACGCTTCCATTGTCGTCAATGGCTTCAATTCAGATTATTCTTCTATCAGAGAACTCATCTTCGCCAGTGATATGGCTATTTCAGGCAAACTGTTCGTTCATAACTCATTAAATGCAATCGTACTGTATACCCAGATGGAAAATCGGCATTCAAGGAAAGATAGCTTCACTTTCTCGTTTATACTCAAGATGGGTATGGGGAGTCATGGGAAGGTTGTGAGGTTCGGATTTGAATCGAATACGTTTGTTAGAAACACCCTTTTTTATTTTCATGCTAATTATGGGGATTTGAAGATTGCAAGCTCACTTTTTGATGCTTCGGAGAAGAGGGATGTTGTGCCATGGTCAGCTTTGACTGCAGGATATGCAAGAAGAGGGAAGTTGGATGTGGCCAGGCGACTTTTCGACCAAATGCCTTTTAAAGATCTGCAAGGGGAGATGGAGAGTGCAAGGAAGCACTTTGATGAGGTTACGAAAAGATATGTGGTGACTTGGAATGCAACGATTGCAGTTTATGTACTTTGCGGGTCGAATGAGCAGGCATTTCAGATGTTTAAGGAGATAAATACGGGAGATTTAGATATTTTTTACAACACTGCAAGCTGTGTTTGGAATTTTGATATTTTCAGGTTATATATATGA

Protein Analysis

277

Amino Acids

31.55

Weight (kDa)

8.5

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 317
AciI CCGC 1 cut(s) 714
AclWI GGATC 1 cut(s) 129
AcoI YGGCCR 1 cut(s) 579
AcsI RAATTY 2 cut(s) 23, 802
AfaI GTAC 3 cut(s) 163, 312, 708
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 5 cut(s) 23, 217, 342, 422, 481
AjnI CCWGG 1 cut(s) 581
AjuI GAANNNNNNNTTGG 2 cut(s) 15, 47
AluBI AGCT 5 cut(s) 176, 354, 492, 539, 792
AluI AGCT 5 cut(s) 176, 354, 492, 539, 792
Alw21I GWGCWC 1 cut(s) 178
AlwI GGATC 1 cut(s) 129
AoxI GGCC 2 cut(s) 108, 579
ApoI RAATTY 2 cut(s) 23, 802
AsuHPI GGTGA 2 cut(s) 126, 688
BalI TGGCCA 1 cut(s) 581
BanII GRGCYC 2 cut(s) 39, 178
Bbv12I GWGCWC 1 cut(s) 178
BccI CCATC 3 cut(s) 319, 373, 622
BcgI CGANNNNNNTGC 2 cut(s) 265, 299
BciT130I CCWGG 1 cut(s) 583
BfmI CTRYAG 1 cut(s) 546
BglII AGATCT 1 cut(s) 613
Bme1390I CCNGG 1 cut(s) 583
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 583
BmsI GCATC 1 cut(s) 493
BpuEI CTTGAG 2 cut(s) 164, 359
BsaBI GATNNNNATC 1 cut(s) 421
BsaJI CCNNGG 2 cut(s) 169, 530
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 255
Bse8I GATNNNNATC 1 cut(s) 421
BseBI CCWGG 1 cut(s) 583
BseDI CCNNGG 2 cut(s) 169, 530
BseGI GGATG 2 cut(s) 526, 580
BseJI GATNNNNATC 1 cut(s) 421
BseLI CCNNNNNNNGG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 255
BshFI GGCC 2 cut(s) 110, 581
BsiHKAI GWGCWC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 47
BsmI GAATGC 2 cut(s) 337, 691
BsnI GGCC 2 cut(s) 110, 581
Bsp1286I GDGCHC 2 cut(s) 39, 178
Bsp143I GATC 3 cut(s) 97, 121, 613
Bsp19I CCATGG 1 cut(s) 530
BspACI CCGC 1 cut(s) 714
BspANI GGCC 2 cut(s) 110, 581
BspLI GGNNCC 1 cut(s) 38
BspMAI CTGCAG 1 cut(s) 550
BspPI GGATC 1 cut(s) 129
BsrI ACTGG 1 cut(s) 255
BssECI CCNNGG 2 cut(s) 169, 530
BssMI GATC 3 cut(s) 97, 121, 613
BssNAI GTATAC 1 cut(s) 318
BssT1I CCWWGG 2 cut(s) 169, 530
Bst1107I GTATAC 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 583
Bst4CI ACNGT 4 cut(s) 132, 142, 282, 315
Bst6I CTCTTC 2 cut(s) 509, 556
BstAPI GCANNNNNTGC 2 cut(s) 554, 695
BstC8I GCNNGC 3 cut(s) 490, 729, 790
BstDSI CCRYGG 1 cut(s) 530
BstF5I GGATG 2 cut(s) 526, 580
BstKTI GATC 3 cut(s) 100, 124, 616
BstMBI GATC 3 cut(s) 97, 121, 613
BstMWI GCNNNNNNNGC 3 cut(s) 545, 554, 695
BstNI CCWGG 1 cut(s) 583
BstSCI CCNGG 1 cut(s) 581
BstSFI CTRYAG 1 cut(s) 546
BstX2I RGATCY 1 cut(s) 613
BstXI CCANNNNNNTGG 1 cut(s) 262
BstYI RGATCY 1 cut(s) 613
BstZ17I GTATAC 1 cut(s) 318
BsuRI GGCC 2 cut(s) 110, 581
BtgI CCRYGG 1 cut(s) 530
BtsCI GGATG 2 cut(s) 526, 580
BtsI GCAGTG 1 cut(s) 783
BtsIMutI CAGTG 2 cut(s) 262, 783
Cac8I GCNNGC 3 cut(s) 490, 729, 790
Csp6I GTAC 3 cut(s) 162, 311, 707
CviAII CATG 3 cut(s) 395, 461, 531
CviQI GTAC 3 cut(s) 162, 311, 707
DpnI GATC 3 cut(s) 99, 123, 615
DpnII GATC 3 cut(s) 97, 121, 613
DraI TTTAAA 1 cut(s) 610
EaeI YGGCCR 1 cut(s) 579
Eam1104I CTCTTC 2 cut(s) 509, 556
EarI CTCTTC 2 cut(s) 509, 556
Ecl136II GAGCTC 1 cut(s) 176
Eco130I CCWWGG 2 cut(s) 169, 530
Eco24I GRGCYC 2 cut(s) 39, 178
Eco53kI GAGCTC 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 581
EcoT14I CCWWGG 2 cut(s) 169, 530
EcoT38I GRGCYC 2 cut(s) 39, 178
ErhI CCWWGG 2 cut(s) 169, 530
FaeI CATG 3 cut(s) 398, 464, 534
FatI CATG 3 cut(s) 394, 460, 530
FauI CCCGC 1 cut(s) 707
FblI GTMKAC 1 cut(s) 317
FokI GGATG 2 cut(s) 533, 587
FriOI GRGCYC 2 cut(s) 39, 178
HaeIII GGCC 2 cut(s) 110, 581
Hin1II CATG 3 cut(s) 398, 464, 534
HinfI GANTC 2 cut(s) 391, 422
HphI GGTGA 2 cut(s) 126, 688
Hpy166II GTNNAC 2 cut(s) 190, 318
Hpy188I TCNGA 6 cut(s) 102, 223, 239, 416, 511, 738
Hpy188III TCNNGA 2 cut(s) 152, 376
Hpy8I GTNNAC 2 cut(s) 190, 318
HpyAV CCTTC 2 cut(s) 50, 394
HpyCH4III ACNGT 4 cut(s) 132, 142, 282, 315
HpyCH4IV ACGT 1 cut(s) 431
HpyF10VI GCNNNNNNNGC 3 cut(s) 545, 554, 695
HpySE526I ACGT 1 cut(s) 431
Hsp92II CATG 3 cut(s) 398, 464, 534
Kzo9I GATC 3 cut(s) 97, 121, 613
LmnI GCTCC 2 cut(s) 42, 173
LweI GCATC 1 cut(s) 493
MaeII ACGT 1 cut(s) 431
MaeIII GTNAC 4 cut(s) 92, 132, 658, 676
MalI GATC 3 cut(s) 99, 123, 615
MboI GATC 3 cut(s) 97, 121, 613
MboII GAAGA 5 cut(s) 222, 241, 493, 526, 573
MflI RGATCY 1 cut(s) 613
MhlI GDGCHC 2 cut(s) 39, 178
MlsI TGGCCA 1 cut(s) 581
MluCI AATT 5 cut(s) 23, 72, 217, 466, 802
MluNI TGGCCA 1 cut(s) 581
MlyI GAGTC 1 cut(s) 400
MmeI TCCRAC 1 cut(s) 552
MnlI CCTC 7 cut(s) 74, 100, 159, 402, 510, 557, 649
Mox20I TGGCCA 1 cut(s) 581
MscI TGGCCA 1 cut(s) 581
MseI TTAA 4 cut(s) 75, 299, 609, 744
MslI CAYNNNNRTG 1 cut(s) 651
Msp20I TGGCCA 1 cut(s) 581
MspR9I CCNGG 1 cut(s) 583
Mva1269I GAATGC 2 cut(s) 337, 691
MvaI CCWGG 1 cut(s) 583
MwoI GCNNNNNNNGC 3 cut(s) 545, 554, 695
NcoI CCATGG 1 cut(s) 530
NdeII GATC 3 cut(s) 97, 121, 613
NlaIII CATG 3 cut(s) 398, 464, 534
NlaIV GGNNCC 1 cut(s) 38
NmuCI GTSAC 3 cut(s) 92, 132, 676
PctI GAATGC 2 cut(s) 337, 691
PfeI GAWTC 1 cut(s) 422
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
Psp124BI GAGCTC 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 581
PspGI CCWGG 1 cut(s) 581
PspN4I GGNNCC 1 cut(s) 38
PstI CTGCAG 1 cut(s) 550
PsuI RGATCY 1 cut(s) 613
RsaI GTAC 3 cut(s) 163, 312, 708
RsaNI GTAC 3 cut(s) 162, 311, 707
RseI CAYNNNNRTG 1 cut(s) 651
SacI GAGCTC 1 cut(s) 178
SaqAI TTAA 4 cut(s) 75, 299, 609, 744
Sau3AI GATC 3 cut(s) 97, 121, 613
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 1 cut(s) 583
SduI GDGCHC 2 cut(s) 39, 178
SfaNI GCATC 1 cut(s) 493
SfcI CTRYAG 1 cut(s) 546
SmiMI CAYNNNNRTG 1 cut(s) 651
SmlI CTYRAG 2 cut(s) 179, 374
SmoI CTYRAG 2 cut(s) 179, 374
Sse9I AATT 5 cut(s) 23, 72, 217, 466, 802
SsiI CCGC 1 cut(s) 714
SstI GAGCTC 1 cut(s) 178
StyD4I CCNGG 1 cut(s) 581
StyI CCWWGG 2 cut(s) 169, 530
TaaI ACNGT 4 cut(s) 132, 142, 282, 315
TaiI ACGT 1 cut(s) 434
TaqI TCGA 3 cut(s) 425, 594, 719
TasI AATT 5 cut(s) 23, 72, 217, 466, 802
TatI WGTACW 1 cut(s) 706
TfiI GAWTC 1 cut(s) 422
Tru1I TTAA 4 cut(s) 75, 299, 609, 744
Tru9I TTAA 4 cut(s) 75, 299, 609, 744
TscAI CASTG 2 cut(s) 262, 790
TseFI GTSAC 3 cut(s) 92, 132, 676
Tsp45I GTSAC 3 cut(s) 92, 132, 676
TspDTI ATGAA 3 cut(s) 69, 278, 449
TspRI CASTG 2 cut(s) 262, 790
XapI RAATTY 2 cut(s) 23, 802
XmiI GTMKAC 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.