Prupe.3G266500_v2.0.a1

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Reverse (-)
24960076 .. 24960733
658 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G266500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 447 bp
ATGAGGTCCCAAGAACTCACTGCTTTCCATGATTCTGATTATGAACATGTTCGCGCAATCGACCGTGATGATCAGACATCCAGCAACGCTCCTGCATCCGTAGAATTACTGATGGAGGAAGCATGGACGACCAAGTGGTTGTGGGATGAGCATGAGTGCCACTGCCAGCTGTGCACTATTTGCTTGGAAGGCTTGAGTTATGCTGCTAATTCTGAAGAAGCCAATAGTAAGGAGATGCCTTGTAAGCAAAAGTTTCACTCGTCTTGTATTCGAACCTGGCTCGCCCGGCGTGGTTCTTGCCCGCTCTGCAGGTCCTCTGTTAAGCCAGTCCTGCCCATGAACATGCCTCTTCTTCAACATGGAGAGGAAGAAGATGAGGAGGTCACTGTGTGGATTAACATTGTCAACAAGATGGATAAATTTTGGTTTGGGAAGATCAGTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

149

Amino Acids

17.14

Weight (kDa)

5.09

Isoelectric Point (pI)

70.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 300
AccBSI CCGCTC 1 cut(s) 304
AccII CGCG 1 cut(s) 54
AciI CCGC 1 cut(s) 302
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 1 cut(s) 234
AdeI CACNNNGTG 1 cut(s) 390
AflIII ACRYGT 1 cut(s) 46
AgsI TTSAA 1 cut(s) 356
AjnI CCWGG 1 cut(s) 275
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw21I GWGCWC 1 cut(s) 176
Alw44I GTGCAC 1 cut(s) 172
ApaLI GTGCAC 1 cut(s) 172
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 419
Asp700I GAANNNNTTC 1 cut(s) 48
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 2 cut(s) 6, 312
AsuC2I CCSGG 1 cut(s) 286
AsuII TTCGAA 1 cut(s) 271
AvaII GGWCC 2 cut(s) 6, 312
BaeGI GKGCMC 1 cut(s) 176
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 1 cut(s) 190
BccI CCATC 2 cut(s) 106, 406
BciT130I CCWGG 1 cut(s) 277
BclI TGATCA 1 cut(s) 70
BcnI CCSGG 1 cut(s) 286
BfmI CTRYAG 1 cut(s) 307
BfuAI ACCTGC 1 cut(s) 300
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 2 cut(s) 277, 286
Bme18I GGWCC 2 cut(s) 6, 312
BmgT120I GGNCC 2 cut(s) 6, 312
BmiI GGNNCC 1 cut(s) 8
BmrFI CCNGG 2 cut(s) 277, 286
BmsI GCATC 2 cut(s) 104, 225
Bpu14I TTCGAA 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 214
BpuMI CCSGG 1 cut(s) 286
Bse1I ACTGG 1 cut(s) 326
BseBI CCWGG 1 cut(s) 277
BseGI GGATG 3 cut(s) 77, 95, 151
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 1 cut(s) 392
BseSI GKGCMC 1 cut(s) 176
BseXI GCAGC 1 cut(s) 190
Bsh1236I CGCG 1 cut(s) 54
Bsh1285I CGRYCG 1 cut(s) 64
BsiEI CGRYCG 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 176
BsiSI CCGG 1 cut(s) 286
Bsp119I TTCGAA 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 2 cut(s) 70, 435
BspACI CCGC 1 cut(s) 302
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 8
BspMAI CTGCAG 1 cut(s) 311
BspMI ACCTGC 1 cut(s) 300
BspT104I TTCGAA 1 cut(s) 271
BsrBI CCGCTC 1 cut(s) 304
BsrI ACTGG 1 cut(s) 326
BssMI GATC 2 cut(s) 70, 435
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 2 cut(s) 65, 388
Bst6I CTCTTC 1 cut(s) 354
BstAPI GCANNNNNTGC 1 cut(s) 180
BstBI TTCGAA 1 cut(s) 271
BstC8I GCNNGC 3 cut(s) 167, 282, 302
BstF5I GGATG 3 cut(s) 77, 95, 151
BstFNI CGCG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 2 cut(s) 73, 438
BstMBI GATC 2 cut(s) 70, 435
BstMCI CGRYCG 1 cut(s) 64
BstMWI GCNNNNNNNGC 7 cut(s) 171, 180, 189, 244, 286, 306, 331
BstNI CCWGG 1 cut(s) 277
BstNSI RCATGY 2 cut(s) 50, 346
BstSCI CCNGG 2 cut(s) 275, 284
BstSFI CTRYAG 1 cut(s) 307
BstSLI GKGCMC 1 cut(s) 176
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 190
BtsCI GGATG 3 cut(s) 77, 95, 151
BtsI GCAGTG 2 cut(s) 18, 160
BtsIMutI CAGTG 3 cut(s) 18, 160, 384
BveI ACCTGC 1 cut(s) 300
Cac8I GCNNGC 3 cut(s) 167, 282, 302
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 6, 312
CviAII CATG 7 cut(s) 29, 47, 123, 152, 337, 343, 359
CviJI RGCY 5 cut(s) 169, 192, 221, 280, 325
CviKI_1 RGCY 5 cut(s) 169, 192, 221, 280, 325
DpnI GATC 2 cut(s) 72, 437
DpnII GATC 2 cut(s) 70, 435
DraIII CACNNNGTG 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco47I GGWCC 2 cut(s) 6, 312
Eco57I CTGAAG 1 cut(s) 234
EcoO109I RGGNCCY 2 cut(s) 6, 312
EcoRII CCWGG 1 cut(s) 275
FaeI CATG 7 cut(s) 32, 50, 126, 155, 340, 346, 362
FatI CATG 7 cut(s) 28, 46, 122, 151, 336, 342, 358
FauI CCCGC 1 cut(s) 309
FbaI TGATCA 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 3 cut(s) 64, 82, 158
Fsp4HI GCNGC 1 cut(s) 204
GlaI GCGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 204
HapII CCGG 1 cut(s) 286
HhaI GCGC 1 cut(s) 56
Hin1II CATG 7 cut(s) 32, 50, 126, 155, 340, 346, 362
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 1 cut(s) 32
HpaII CCGG 1 cut(s) 286
Hpy166II GTNNAC 2 cut(s) 174, 406
Hpy188I TCNGA 3 cut(s) 37, 75, 214
Hpy8I GTNNAC 2 cut(s) 174, 406
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 2 cut(s) 65, 388
HpyCH4V TGCA 3 cut(s) 95, 174, 309
HpyF10VI GCNNNNNNNGC 7 cut(s) 171, 180, 189, 244, 286, 306, 331
Hsp92II CATG 7 cut(s) 32, 50, 126, 155, 340, 346, 362
HspAI GCGC 1 cut(s) 54
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 2 cut(s) 70, 435
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 9 cut(s) 94, 105, 179, 262, 289, 295, 299, 339, 344
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 2 cut(s) 104, 225
MaeIII GTNAC 1 cut(s) 382
MalI GATC 2 cut(s) 72, 437
MbiI CCGCTC 1 cut(s) 304
MboI GATC 2 cut(s) 70, 435
MboII GAAGA 6 cut(s) 227, 341, 344, 380, 383, 445
MhlI GDGCHC 1 cut(s) 176
MluCI AATT 3 cut(s) 104, 208, 419
MnlI CCTC 6 cut(s) 109, 325, 357, 358, 370, 373
MroXI GAANNNNTTC 1 cut(s) 48
MseI TTAA 2 cut(s) 321, 396
MslI CAYNNNNRTG 1 cut(s) 341
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 1 cut(s) 286
MspR9I CCNGG 2 cut(s) 277, 286
MvaI CCWGG 1 cut(s) 277
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 7 cut(s) 171, 180, 189, 244, 286, 306, 331
NciI CCSGG 1 cut(s) 286
NdeII GATC 2 cut(s) 70, 435
NlaIII CATG 7 cut(s) 32, 50, 126, 155, 340, 346, 362
NlaIV GGNNCC 1 cut(s) 8
NmuCI GTSAC 1 cut(s) 382
NspI RCATGY 2 cut(s) 50, 346
NspV TTCGAA 1 cut(s) 271
PciI ACATGT 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 1 cut(s) 205
PpuMI RGGWCCY 2 cut(s) 6, 312
PscI ACATGT 1 cut(s) 46
Psp5II RGGWCCY 2 cut(s) 6, 312
Psp6I CCWGG 1 cut(s) 275
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 1 cut(s) 8
PspPI GGNCC 2 cut(s) 6, 312
PspPPI RGGWCCY 2 cut(s) 6, 312
PstI CTGCAG 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 2 cut(s) 321, 396
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 2 cut(s) 70, 435
Sau96I GGNCC 2 cut(s) 6, 312
ScrFI CCNGG 2 cut(s) 277, 286
SduI GDGCHC 1 cut(s) 176
SetI ASST 5 cut(s) 8, 171, 278, 314, 384
SfaNI GCATC 2 cut(s) 104, 225
SfcI CTRYAG 1 cut(s) 307
SfuI TTCGAA 1 cut(s) 271
SinI GGWCC 2 cut(s) 6, 312
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 3 cut(s) 104, 208, 419
SsiI CCGC 1 cut(s) 302
StyD4I CCNGG 2 cut(s) 275, 284
TaaI ACNGT 2 cut(s) 65, 388
TaqI TCGA 2 cut(s) 60, 271
TasI AATT 3 cut(s) 104, 208, 419
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 2 cut(s) 321, 396
Tru9I TTAA 2 cut(s) 321, 396
TscAI CASTG 3 cut(s) 25, 167, 391
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 2 cut(s) 57, 353
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 3 cut(s) 25, 167, 391
VneI GTGCAC 1 cut(s) 172
VpaK11BI GGWCC 2 cut(s) 6, 312
XapI RAATTY 1 cut(s) 419
XceI RCATGY 2 cut(s) 50, 346
XmnI GAANNNNTTC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.