Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

25343673 .. 25344483

Gene Structure 811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G274000.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTGTTTGAGCACCCTGCAACATTTGAGTCCTTGGCAATGGACCCAAAAGAGAAGCAAGCGATCATCAATGATCTCCTTAAGTTCAGCAAAGGGAAAGACTACTACAAGAAAATTGGCAAGGCTGGGAAGCGTGGATATCTCCTTTACGAGCCACTGGGCACCGGCAAGTCTACCATGATCTTTGCCATGTCTAACCTCATGAACTATGTGTTAAAATTTCAGAGGGACAAACCCTTGACCCAGCAACATCGATATTGTCCACAACTTAACCACCTGTTTAGCAGTTTTCGATGTGGGACTATGTGTATTCTTCAACACTATGATGTCTATGATCTCGAATTAACTATTGTCAAGGACAACACTGAGCTGAGGAAGATGTTGATCGCCATAACTGGCAAGGCGATTATCGTGATCAAGGACATTGATTGCTCGCTTGATCTTACCGAACATCGAGAGAAAAAGAAGGAAGAGAAGGAGAAGAAAGATGGAGATGAAAAGGACTCAATTCCTAAAAGGCCTAAAGAAGAAGAAGCCACAACGAGCAAGGTCACTTTGTCTGGGCTGTTGAACTTTACTGATGGGATTTGGTCAGCTTGTGGAGAGGAGAGACTGATTGTGTTCACCCCTAACTATGTGGACAAACTCGATCTTGCTTTCATTAGAAGGGGAAGAATGGACAAGCATATTCAGTTGTCCTATTGTTGCTACGAAGCCAATGCGGAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

244

Amino Acids

28.06

Weight (kDa)

8.34

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	173
AciI	CCGC	1 cut(s)	722
AcsI	RAATTY	1 cut(s)	218
AflII	CTTAAG	1 cut(s)	80
AgsI	TTSAA	2 cut(s)	317, 571
AluBI	AGCT	2 cut(s)	370, 596
AluI	AGCT	2 cut(s)	370, 596
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	604
AoxI	GGCC	1 cut(s)	518
ApoI	RAATTY	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	616
AvaII	GGWCC	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	15
BbvCI	CCTCAGC	1 cut(s)	371
BccI	CCATC	2 cut(s)	482, 575
BcgI	CGANNNNNNTGC	1 cut(s)	701
BclI	TGATCA	1 cut(s)	414
BcoDI	GTCTC	1 cut(s)	604
BfrI	CTTAAG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	2 cut(s)	45, 163
BmrI	ACTGGG	1 cut(s)	167
BmuI	ACTGGG	1 cut(s)	167
Bpu10I	CCTNAGC	1 cut(s)	371
Bsa29I	ATCGAT	1 cut(s)	253
BsaBI	GATNNNNATC	1 cut(s)	383
BsaJI	CCNNGG	1 cut(s)	33
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	2 cut(s)	162, 400
Bse3DI	GCAATG	1 cut(s)	45
Bse8I	GATNNNNATC	1 cut(s)	383
BseCI	ATCGAT	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	33
BseJI	GATNNNNATC	1 cut(s)	383
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	357, 362
BseNI	ACTGG	2 cut(s)	162, 400
BseRI	GAGGAG	1 cut(s)	620
BseSI	GKGCMC	1 cut(s)	164
BseYI	CCCAGC	2 cut(s)	125, 243
BshFI	GGCC	1 cut(s)	520
BshNI	GGYRCC	1 cut(s)	161
BshVI	ATCGAT	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	2 cut(s)	242, 313
BsmAI	GTCTC	1 cut(s)	604
BsmFI	GGGAC	2 cut(s)	242, 313
BsnI	GGCC	1 cut(s)	520
Bsp1286I	GDGCHC	2 cut(s)	15, 164
Bsp143I	GATC	8 cut(s)	63, 73, 180, 334, 384, 414, 439, 649
BspACI	CCGC	1 cut(s)	722
BspANI	GGCC	1 cut(s)	520
BspCNI	CTCAG	2 cut(s)	358, 363
BspDI	ATCGAT	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	45, 163
BspT107I	GGYRCC	1 cut(s)	161
BspTI	CTTAAG	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	2 cut(s)	162, 400
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	8 cut(s)	63, 73, 180, 334, 384, 414, 439, 649
BssT1I	CCWWGG	1 cut(s)	33
Bst6I	CTCTTC	1 cut(s)	465
BstAFI	CTTAAG	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	60, 434
BstDEI	CTNAG	2 cut(s)	366, 371
BstKTI	GATC	8 cut(s)	66, 76, 183, 337, 387, 417, 442, 652
BstMAI	GTCTC	1 cut(s)	604
BstMBI	GATC	8 cut(s)	63, 73, 180, 334, 384, 414, 439, 649
BstSLI	GKGCMC	1 cut(s)	164
Bsu15I	ATCGAT	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	520
BsuTUI	ATCGAT	1 cut(s)	253
BtsIMutI	CAGTG	2 cut(s)	155, 363
Cac8I	GCNNGC	2 cut(s)	60, 434
CciI	TCATGA	1 cut(s)	201
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	43
ClaI	ATCGAT	1 cut(s)	253
CviAII	CATG	3 cut(s)	178, 190, 202
CviJI	RGCY	8 cut(s)	125, 154, 370, 520, 536, 565, 596, 716
CviKI_1	RGCY	8 cut(s)	125, 154, 370, 520, 536, 565, 596, 716
DdeI	CTNAG	2 cut(s)	366, 371
DpnI	GATC	8 cut(s)	65, 75, 182, 336, 386, 416, 441, 651
DpnII	GATC	8 cut(s)	63, 73, 180, 334, 384, 414, 439, 649
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	520
Eco32I	GATATC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	43
EcoRV	GATATC	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	3 cut(s)	181, 193, 205
FaqI	GGGAC	2 cut(s)	242, 313
FatI	CATG	3 cut(s)	177, 189, 201
FbaI	TGATCA	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	173
GsaI	CCCAGC	2 cut(s)	129, 247
HaeIII	GGCC	1 cut(s)	520
HapII	CCGG	1 cut(s)	165
Hin1II	CATG	3 cut(s)	181, 193, 205
HinfI	GANTC	3 cut(s)	29, 503, 725
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	1 cut(s)	616
Hpy166II	GTNNAC	4 cut(s)	174, 263, 624, 640
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	4 cut(s)	202, 338, 412, 455
Hpy8I	GTNNAC	4 cut(s)	174, 263, 624, 640
HpyAV	CCTTC	3 cut(s)	460, 469, 660
HpyCH4V	TGCA	1 cut(s)	20
HpyF3I	CTNAG	2 cut(s)	366, 371
Hsp92II	CATG	3 cut(s)	181, 193, 205
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	8 cut(s)	63, 73, 180, 334, 384, 414, 439, 649
LpnPI	CCDG	8 cut(s)	30, 111, 143, 178, 257, 290, 381, 546
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	8 cut(s)	65, 75, 182, 336, 386, 416, 441, 651
MboI	GATC	8 cut(s)	63, 73, 180, 334, 384, 414, 439, 649
MboII	GAAGA	7 cut(s)	305, 388, 482, 493, 539, 542, 684
MhlI	GDGCHC	2 cut(s)	15, 164
MluCI	AATT	4 cut(s)	114, 218, 341, 507
MlyI	GAGTC	2 cut(s)	38, 497
MnlI	CCTC	4 cut(s)	209, 219, 366, 598
MseI	TTAA	4 cut(s)	81, 215, 270, 344
MslI	CAYNNNNRTG	1 cut(s)	324
MspCI	CTTAAG	1 cut(s)	80
MspI	CCGG	1 cut(s)	165
NdeII	GATC	8 cut(s)	63, 73, 180, 334, 384, 414, 439, 649
NlaIII	CATG	3 cut(s)	181, 193, 205
NlaIV	GGNNCC	2 cut(s)	45, 163
NmuCI	GTSAC	1 cut(s)	550
PagI	TCATGA	1 cut(s)	201
PceI	AGGCCT	1 cut(s)	520
PfeI	GAWTC	1 cut(s)	725
PleI	GAGTC	2 cut(s)	37, 497
PpsI	GAGTC	2 cut(s)	37, 497
PspFI	CCCAGC	2 cut(s)	125, 243
PspN4I	GGNNCC	2 cut(s)	45, 163
PspPI	GGNCC	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	4 cut(s)	81, 215, 270, 344
Sau3AI	GATC	8 cut(s)	63, 73, 180, 334, 384, 414, 439, 649
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	2 cut(s)	38, 497
SduI	GDGCHC	2 cut(s)	15, 164
SetI	ASST	5 cut(s)	201, 279, 372, 552, 598
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	4 cut(s)	114, 218, 341, 507
SseBI	AGGCCT	1 cut(s)	520
SsiI	CCGC	1 cut(s)	722
StuI	AGGCCT	1 cut(s)	520
StyI	CCWWGG	1 cut(s)	33
TaqI	TCGA	5 cut(s)	253, 292, 339, 454, 648
TasI	AATT	4 cut(s)	114, 218, 341, 507
TfiI	GAWTC	1 cut(s)	725
Tru1I	TTAA	4 cut(s)	81, 215, 270, 344
Tru9I	TTAA	4 cut(s)	81, 215, 270, 344
TscAI	CASTG	2 cut(s)	162, 370
TseFI	GTSAC	1 cut(s)	550
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	3 cut(s)	218, 510, 649
TspRI	CASTG	2 cut(s)	162, 370
Vha464I	CTTAAG	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.