Prupe.3G298000_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Forward (+)
26409262 .. 26410802
1541 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G298000.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 234 bp
ATGAAGTTGCTGCTGCTGGCTGGCTATTTGGTTTTTATGATCGTTATACAAGTGAGGACCGAGCTTGTTCAAGCAGGCACTCGCCTTCCTTTTCTCATCAACTCTCAAGACCTCGAGGCATTTGAATATGTTACTATAACAGGATGCAACAACGACTGCGACACGGCCTGTTGCAATTGCGATATCAGCAAACAGCCTCCACTATGTGTGCTATGTTGTAGAGAAGACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.59

Weight (kDa)

4.36

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 113
AdeI CACNNNGTG 1 cut(s) 206
AgsI TTSAA 2 cut(s) 71, 125
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 2 cut(s) 10, 13
AspS9I GGNCC 1 cut(s) 57
AvaI CYCGRG 1 cut(s) 113
AvaII GGWCC 1 cut(s) 57
BceAI ACGGC 1 cut(s) 180
BisI GCNGC 2 cut(s) 11, 14
BlsI GCNGC 2 cut(s) 12, 15
Bme18I GGWCC 1 cut(s) 57
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 57
BmsI GCATC 1 cut(s) 134
BpuEI CTTGAG 1 cut(s) 90
BseGI GGATG 1 cut(s) 149
BshFI GGCC 1 cut(s) 167
BsiHKCI CYCGRG 1 cut(s) 113
BsnI GGCC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 113
Bsp143I GATC 1 cut(s) 39
BspANI GGCC 1 cut(s) 167
BssMI GATC 1 cut(s) 39
BstC8I GCNNGC 3 cut(s) 18, 22, 76
BstF5I GGATG 1 cut(s) 149
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 186
BsuRI GGCC 1 cut(s) 167
BtsCI GGATG 1 cut(s) 149
Cac8I GCNNGC 3 cut(s) 18, 22, 76
Cfr13I GGNCC 1 cut(s) 57
CviJI RGCY 5 cut(s) 20, 24, 64, 167, 196
CviKI_1 RGCY 5 cut(s) 20, 24, 64, 167, 196
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
DraIII CACNNNGTG 1 cut(s) 206
Eco32I GATATC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 113
EcoRV GATATC 1 cut(s) 184
FaiI YATR 6 cut(s) 38, 47, 129, 137, 205, 214
Fnu4HI GCNGC 2 cut(s) 11, 14
FokI GGATG 1 cut(s) 156
Fsp4HI GCNGC 2 cut(s) 11, 14
GluI GCNGC 2 cut(s) 11, 14
HaeIII GGCC 1 cut(s) 167
Hpy188III TCNNGA 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 147, 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
Kzo9I GATC 1 cut(s) 39
LpnPI CCDG 5 cut(s) 2, 6, 60, 126, 181
LweI GCATC 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MfeI CAATTG 1 cut(s) 175
MluCI AATT 1 cut(s) 175
MnlI CCTC 4 cut(s) 48, 109, 122, 207
MunI CAATTG 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 186
NdeII GATC 1 cut(s) 39
PaeR7I CTCGAG 1 cut(s) 113
PkrI GCNGC 2 cut(s) 12, 15
PspPI GGNCC 1 cut(s) 57
PspXI VCTCGAGB 1 cut(s) 113
SatI GCNGC 2 cut(s) 11, 14
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 1 cut(s) 57
SetI ASST 2 cut(s) 66, 114
SfaNI GCATC 1 cut(s) 134
Sfr274I CTCGAG 1 cut(s) 113
SinI GGWCC 1 cut(s) 57
SlaI CTCGAG 1 cut(s) 113
SmlI CTYRAG 2 cut(s) 105, 113
SmoI CTYRAG 2 cut(s) 105, 113
Sse9I AATT 1 cut(s) 175
TaqI TCGA 1 cut(s) 114
TaqII GACCGA 1 cut(s) 74
TasI AATT 1 cut(s) 175
TseI GCWGC 2 cut(s) 10, 13
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 57
XhoI CTCGAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.