Prupe.3G299800_v2.0.a1

Membrane protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
N/A
Physical Location & Seq
Reverse (-)
26501438 .. 26503099
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G299800.1_v2.0.a1.CDS.4

Sequence Viewer

Length: 474 bp
ATGGCGAAAATGCTCTCTGAGGAGAGGGCTTGGAGGAAGAGGGTGGTCGTTCATGAAAATGCTGCTCTGCTCTCACATAAGTCCTTCCGTGCGGATGGTTCTGGAGAAGACTATAAACTGCTACCTAGTGGTCCAGCTTCATTGCCAGATGAGCAGGTGCCTATATCACACAACGACGACAACGTTTACTGGAAGGAGTTATTGATGCTTGTGAATGTTTGGGTGGCTTTTCTTATTGTTCAGATTGTTAAGGTACCAATTGCCATCTCCGTTACGCTCTTTGAAGCCAAATTCTTATGCAAAGGCACCAGGGCGATTGCATCCAAAGGAAAGGAAATCACAAATTGGAAGTTGCATCAGATTTTTCCTTACTGCAGCTGTGGGATAGTAGCTGGTATGGTGGGTAGCCTACTTGGGCTGGGAGGCGGTTTCATCTTGGGACCCCTTTCTCTTGAATTGGGAATTCCTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauE

Protein Analysis

158

Amino Acids

17.17

Weight (kDa)

8.45

Isoelectric Point (pI)

26.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 145
Acc36I ACCTGC 1 cut(s) 145
Acc65I GGTACC 1 cut(s) 253
AccB1I GGYRCC 3 cut(s) 157, 253, 305
AciI CCGC 2 cut(s) 92, 426
AclI AACGTT 1 cut(s) 183
AcsI RAATTY 2 cut(s) 290, 462
AfaI GTAC 1 cut(s) 255
AgsI TTSAA 2 cut(s) 284, 455
AjnI CCWGG 1 cut(s) 308
AluBI AGCT 3 cut(s) 137, 378, 392
AluI AGCT 3 cut(s) 137, 378, 392
ApeKI GCWGC 2 cut(s) 62, 375
ApoI RAATTY 2 cut(s) 290, 462
Asp718I GGTACC 1 cut(s) 253
AspS9I GGNCC 2 cut(s) 131, 440
AvaII GGWCC 2 cut(s) 131, 440
BanI GGYRCC 3 cut(s) 157, 253, 305
BbsI GAAGAC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 49, 387
BccI CCATC 2 cut(s) 89, 272
BciT130I CCWGG 1 cut(s) 310
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 373
BfuAI ACCTGC 1 cut(s) 145
BisI GCNGC 2 cut(s) 63, 376
BlsI GCNGC 2 cut(s) 64, 377
Bme1390I CCNGG 1 cut(s) 310
Bme18I GGWCC 2 cut(s) 131, 440
BmgT120I GGNCC 2 cut(s) 131, 440
BmiI GGNNCC 5 cut(s) 159, 255, 307, 441, 442
BmrFI CCNGG 1 cut(s) 310
BmsI GCATC 3 cut(s) 195, 329, 364
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 140
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 2 cut(s) 100, 320
BseMI GCAATG 1 cut(s) 140
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 49, 387
BseYI CCCAGC 1 cut(s) 418
BshNI GGYRCC 3 cut(s) 157, 253, 305
BslFI GGGAC 1 cut(s) 453
BsmFI GGGAC 1 cut(s) 453
BspACI CCGC 2 cut(s) 92, 426
BspCNI CTCAG 1 cut(s) 10
BspHI TCATGA 1 cut(s) 52
BspLI GGNNCC 5 cut(s) 159, 255, 307, 441, 442
BspMAI CTGCAG 1 cut(s) 377
BspMI ACCTGC 1 cut(s) 145
BspT107I GGYRCC 3 cut(s) 157, 253, 305
BsrDI GCAATG 1 cut(s) 140
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 310
Bst6I CTCTTC 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 18, 471
BstF5I GGATG 2 cut(s) 100, 320
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNI CCWGG 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 373
BstV1I GCAGC 2 cut(s) 49, 387
BstV2I GAAGAC 1 cut(s) 114
BtsCI GGATG 2 cut(s) 100, 320
BveI ACCTGC 1 cut(s) 145
CciI TCATGA 1 cut(s) 52
Cfr13I GGNCC 2 cut(s) 131, 440
Csp6I GTAC 1 cut(s) 254
CviAII CATG 1 cut(s) 53
CviJI RGCY 8 cut(s) 29, 137, 227, 287, 378, 392, 408, 418
CviKI_1 RGCY 8 cut(s) 29, 137, 227, 287, 378, 392, 408, 418
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 2 cut(s) 18, 471
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco47I GGWCC 2 cut(s) 131, 440
EcoO109I RGGNCCY 1 cut(s) 440
EcoRI GAATTC 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 308
FaeI CATG 1 cut(s) 56
FaiI YATR 6 cut(s) 54, 78, 114, 164, 298, 398
FaqI GGGAC 1 cut(s) 453
FatI CATG 1 cut(s) 52
Fnu4HI GCNGC 2 cut(s) 63, 376
FokI GGATG 2 cut(s) 107, 307
Fsp4HI GCNGC 2 cut(s) 63, 376
FspBI CTAG 1 cut(s) 126
GluI GCNGC 2 cut(s) 63, 376
GsaI CCCAGC 1 cut(s) 422
GsuI CTGGAG 1 cut(s) 123
Hin1II CATG 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 3 cut(s) 19, 243, 360
Hpy188III TCNNGA 3 cut(s) 53, 102, 452
Hpy8I GTNNAC 1 cut(s) 187
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 94, 187
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 4 cut(s) 300, 320, 355, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 2 cut(s) 18, 471
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 1 cut(s) 56
KflI GGGWCCC 1 cut(s) 440
KpnI GGTACC 1 cut(s) 257
LpnPI CCDG 9 cut(s) 87, 140, 147, 159, 175, 295, 322, 378, 404
Lsp1109I GCAGC 2 cut(s) 49, 387
LweI GCATC 3 cut(s) 195, 329, 364
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 271
MboII GAAGA 2 cut(s) 49, 119
MfeI CAATTG 1 cut(s) 258
MluCI AATT 5 cut(s) 258, 290, 343, 455, 462
MnlI CCTC 5 cut(s) 13, 18, 27, 33, 416
MseI TTAA 1 cut(s) 249
MslI CAYNNNNRTG 1 cut(s) 57
MspA1I CMGCKG 1 cut(s) 378
MspR9I CCNGG 1 cut(s) 310
MunI CAATTG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 310
MwoI GCNNNNNNNGC 1 cut(s) 151
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 5 cut(s) 159, 255, 307, 441, 442
PagI TCATGA 1 cut(s) 52
PaqCI CACCTGC 1 cut(s) 145
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PkrI GCNGC 2 cut(s) 64, 377
PpuMI RGGWCCY 1 cut(s) 440
Psp1406I AACGTT 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 440
Psp6I CCWGG 1 cut(s) 308
PspFI CCCAGC 1 cut(s) 418
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 5 cut(s) 159, 255, 307, 441, 442
PspPI GGNCC 2 cut(s) 131, 440
PspPPI RGGWCCY 1 cut(s) 440
PstI CTGCAG 1 cut(s) 377
PvuII CAGCTG 1 cut(s) 378
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 2 cut(s) 63, 376
Sau96I GGNCC 2 cut(s) 131, 440
ScrFI CCNGG 1 cut(s) 310
SetI ASST 7 cut(s) 127, 139, 159, 186, 255, 380, 394
SfaNI GCATC 3 cut(s) 195, 329, 364
SfcI CTRYAG 1 cut(s) 373
SinI GGWCC 2 cut(s) 131, 440
SmiMI CAYNNNNRTG 1 cut(s) 57
Sse9I AATT 5 cut(s) 258, 290, 343, 455, 462
SsiI CCGC 2 cut(s) 92, 426
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 308
TaiI ACGT 1 cut(s) 186
TasI AATT 5 cut(s) 258, 290, 343, 455, 462
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TseI GCWGC 2 cut(s) 62, 375
TspDTI ATGAA 4 cut(s) 41, 69, 129, 421
TspGWI ACGGA 2 cut(s) 77, 259
VpaK11BI GGWCC 2 cut(s) 131, 440
XapI RAATTY 2 cut(s) 290, 462
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.