Prupe.4G004200_v2.0.a1

Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
271278 .. 272705
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G004200.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 765 bp
ATGGATCATCAGAAGAAGAGAGGGTACCGTCCAAAGTGGGCAACAACAAAGTTTAAGTGCGAGATAAATTTGATATTCTTATTTTTCTACACTCACTCACTGTGGATGGATCATGGAATCATTGATGTATGGTTGGTCCCATGCAATTATGAAATGAAGTTGAAGGGATGCTCCTCTCCTCCTCCTCCTCATCAAATCATATATATATCGCTGACTCGGACAACGACTCGGGAGCAGGAGGAGGAGGAGGAGGAGGAGAAACGAATTACACAAGATCTTCATCATCCTCAGCGAGATAGCACGACAGGTTTTTACCGATTGCAAACGATGATGAAGAAAGGTTTGCCAGGCAACGCCAAGATTTCAAAAGACGCTAAAGAGACGGTGCAGTACTTCACCACGGGAGAGGCCTCAGGTAAGTGCCGGAGAGAGAAGAGGAAGACAATCAACGGTGACGATCTATTGTGGGCCATGACGAGGCTGGGTTTTAAGGAATACGTGGAGCCTCTCAAGATTTATTTGCACAAGTTCAGAGAGATGGAGGGTGAGAAGACTGCTGGAACAGGAATGGCTAGGCAGCTGCTGTACGCTGATCATCATCCTCATGAATATCATGATCAAAGGCAGAGAGAGCAGTTGCAGCACCTGCATGCACCTGGGATGAACATGTATGGTGGGATGATGATGGGTCATCAACGTCATCATCAAGGTCAAGGGCATCATCCTTATCTTTATGGATCTGGTAGTGGACCCTCTAGTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 ko05152 ko05166 map04612 map05152 map05166
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

255

Amino Acids

29.78

Weight (kDa)

9.0

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 654
AasI GACNNNNNNGTC 1 cut(s) 756
Acc36I ACCTGC 1 cut(s) 654
Acc65I GGTACC 1 cut(s) 24
AccB1I GGYRCC 1 cut(s) 24
AclWI GGATC 3 cut(s) 12, 117, 745
AcsI RAATTY 1 cut(s) 67
AfaI GTAC 3 cut(s) 26, 392, 587
AfiI CCNNNNNNNGG 1 cut(s) 477
AflIII ACRYGT 1 cut(s) 666
AgsI TTSAA 2 cut(s) 163, 366
AjnI CCWGG 2 cut(s) 346, 655
AluBI AGCT 1 cut(s) 580
AluI AGCT 1 cut(s) 580
Alw26I GTCTC 1 cut(s) 374
AlwI GGATC 3 cut(s) 12, 117, 745
AlwNI CAGNNNCTG 2 cut(s) 583, 646
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 2 cut(s) 408, 468
ApeKI GCWGC 3 cut(s) 577, 580, 640
ApoI RAATTY 1 cut(s) 67
Asp718I GGTACC 1 cut(s) 24
AspS9I GGNCC 3 cut(s) 136, 468, 749
AsuHPI GGTGA 3 cut(s) 388, 464, 557
AvaI CYCGRG 1 cut(s) 228
AvaII GGWCC 2 cut(s) 136, 749
AxyI CCTNAGG 1 cut(s) 412
BanI GGYRCC 1 cut(s) 24
BarI GAAGNNNNNNTAC 2 cut(s) 8, 40
BbsI GAAGAC 2 cut(s) 446, 557
BbvCI CCTCAGC 1 cut(s) 288
BbvI GCAGC 3 cut(s) 567, 589, 652
BccI CCATC 3 cut(s) 100, 532, 679
BciT130I CCWGG 2 cut(s) 348, 657
BclI TGATCA 2 cut(s) 592, 616
BcoDI GTCTC 1 cut(s) 374
BfaI CTAG 2 cut(s) 573, 756
BfuAI ACCTGC 1 cut(s) 654
BglII AGATCT 1 cut(s) 274
BisI GCNGC 3 cut(s) 578, 581, 641
BlsI GCNGC 3 cut(s) 579, 582, 642
BmcAI AGTACT 1 cut(s) 392
Bme1390I CCNGG 2 cut(s) 348, 657
Bme18I GGWCC 2 cut(s) 136, 749
BmeT110I CYCGRG 1 cut(s) 228
BmgT120I GGNCC 3 cut(s) 136, 468, 749
BmiI GGNNCC 4 cut(s) 26, 138, 504, 751
BmrFI CCNGG 2 cut(s) 348, 657
BmsI GCATC 2 cut(s) 158, 727
BpiI GAAGAC 2 cut(s) 446, 557
Bpu10I CCTNAGC 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 494
BsaAI YACGTR 1 cut(s) 499
BsaBI GATNNNNATC 2 cut(s) 279, 597
BsaJI CCNNGG 2 cut(s) 399, 656
Bsc4I CCNNNNNNNGG 1 cut(s) 477
Bse21I CCTNAGG 1 cut(s) 412
Bse8I GATNNNNATC 2 cut(s) 279, 597
BseBI CCWGG 2 cut(s) 348, 657
BseDI CCNNGG 2 cut(s) 399, 656
BseGI GGATG 7 cut(s) 111, 173, 283, 598, 666, 684, 721
BseJI GATNNNNATC 2 cut(s) 279, 597
BseLI CCNNNNNNNGG 1 cut(s) 477
BseMII CTCAG 2 cut(s) 302, 426
BseXI GCAGC 3 cut(s) 567, 589, 652
BseYI CCCAGC 1 cut(s) 481
BsgI GTGCAG 1 cut(s) 407
BshFI GGCC 2 cut(s) 410, 470
BshNI GGYRCC 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 228
BsiSI CCGG 1 cut(s) 424
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 477
BsmAI GTCTC 1 cut(s) 374
BsmBI CGTCTC 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 2 cut(s) 410, 470
BsoBI CYCGRG 1 cut(s) 228
Bsp143I GATC 7 cut(s) 4, 109, 274, 457, 592, 616, 737
BspANI GGCC 2 cut(s) 410, 470
BspCNI CTCAG 2 cut(s) 301, 425
BspHI TCATGA 2 cut(s) 604, 613
BspLI GGNNCC 4 cut(s) 26, 138, 504, 751
BspMI ACCTGC 1 cut(s) 654
BspPI GGATC 3 cut(s) 12, 117, 745
BspT107I GGYRCC 1 cut(s) 24
BssECI CCNNGG 2 cut(s) 399, 656
BssMI GATC 7 cut(s) 4, 109, 274, 457, 592, 616, 737
Bst2UI CCWGG 2 cut(s) 348, 657
Bst4CI ACNGT 4 cut(s) 29, 102, 385, 452
Bst6I CTCTTC 2 cut(s) 11, 428
BstAPI GCANNNNNTGC 1 cut(s) 646
BstBAI YACGTR 1 cut(s) 499
BstC8I GCNNGC 1 cut(s) 651
BstDEI CTNAG 2 cut(s) 288, 412
BstDSI CCRYGG 1 cut(s) 399
BstF5I GGATG 7 cut(s) 111, 173, 283, 598, 666, 684, 721
BstKTI GATC 7 cut(s) 7, 112, 277, 460, 595, 619, 740
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 7 cut(s) 4, 109, 274, 457, 592, 616, 737
BstMWI GCNNNNNNNGC 3 cut(s) 631, 640, 646
BstNI CCWGG 2 cut(s) 348, 657
BstNSI RCATGY 2 cut(s) 653, 670
BstSCI CCNGG 2 cut(s) 346, 655
BstV1I GCAGC 3 cut(s) 567, 589, 652
BstV2I GAAGAC 2 cut(s) 446, 557
BstX2I RGATCY 2 cut(s) 274, 737
BstYI RGATCY 2 cut(s) 274, 737
Bsu36I CCTNAGG 1 cut(s) 412
BsuRI GGCC 2 cut(s) 410, 470
BtgI CCRYGG 1 cut(s) 399
BtsCI GGATG 7 cut(s) 111, 173, 283, 598, 666, 684, 721
BtsIMutI CAGTG 1 cut(s) 98
BveI ACCTGC 1 cut(s) 654
Cac8I GCNNGC 1 cut(s) 651
CaiI CAGNNNCTG 2 cut(s) 583, 646
CciI TCATGA 2 cut(s) 604, 613
Cfr13I GGNCC 3 cut(s) 136, 468, 749
CseI GACGC 1 cut(s) 380
Csp6I GTAC 3 cut(s) 25, 391, 586
CviAII CATG 7 cut(s) 113, 141, 472, 605, 614, 650, 667
CviJI RGCY 6 cut(s) 410, 470, 481, 505, 572, 580
CviKI_1 RGCY 6 cut(s) 410, 470, 481, 505, 572, 580
CviQI GTAC 3 cut(s) 25, 391, 586
DdeI CTNAG 2 cut(s) 288, 412
DpnI GATC 7 cut(s) 6, 111, 276, 459, 594, 618, 739
DpnII GATC 7 cut(s) 4, 109, 274, 457, 592, 616, 737
DrdI GACNNNNNNGTC 1 cut(s) 756
DseDI GACNNNNNNGTC 1 cut(s) 756
Eam1104I CTCTTC 2 cut(s) 11, 428
EarI CTCTTC 2 cut(s) 11, 428
Eco147I AGGCCT 1 cut(s) 410
Eco47I GGWCC 2 cut(s) 136, 749
Eco81I CCTNAGG 1 cut(s) 412
Eco88I CYCGRG 1 cut(s) 228
EcoRII CCWGG 2 cut(s) 346, 655
Esp3I CGTCTC 1 cut(s) 374
FaeI CATG 7 cut(s) 116, 144, 475, 608, 617, 653, 670
FaqI GGGAC 1 cut(s) 122
FatI CATG 7 cut(s) 112, 140, 471, 604, 613, 649, 666
FbaI TGATCA 2 cut(s) 592, 616
Fnu4HI GCNGC 3 cut(s) 578, 581, 641
FokI GGATG 7 cut(s) 118, 180, 270, 585, 673, 691, 708
Fsp4HI GCNGC 3 cut(s) 578, 581, 641
FspBI CTAG 2 cut(s) 573, 756
GluI GCNGC 3 cut(s) 578, 581, 641
GsaI CCCAGC 1 cut(s) 485
HaeIII GGCC 2 cut(s) 410, 470
HapII CCGG 1 cut(s) 424
HgaI GACGC 1 cut(s) 380
Hin1II CATG 7 cut(s) 116, 144, 475, 608, 617, 653, 670
HinfI GANTC 3 cut(s) 117, 214, 226
HpaII CCGG 1 cut(s) 424
HphI GGTGA 3 cut(s) 388, 464, 557
Hpy166II GTNNAC 1 cut(s) 749
Hpy188I TCNGA 3 cut(s) 12, 219, 533
Hpy188III TCNNGA 4 cut(s) 230, 511, 605, 614
Hpy8I GTNNAC 1 cut(s) 749
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 4 cut(s) 29, 102, 385, 452
HpyCH4IV ACGT 2 cut(s) 498, 697
HpyCH4V TGCA 7 cut(s) 144, 322, 388, 523, 640, 649, 653
HpyF10VI GCNNNNNNNGC 3 cut(s) 631, 640, 646
HpyF3I CTNAG 2 cut(s) 288, 412
HpySE526I ACGT 2 cut(s) 498, 697
Hsp92II CATG 7 cut(s) 116, 144, 475, 608, 617, 653, 670
KpnI GGTACC 1 cut(s) 28
Ksp22I TGATCA 2 cut(s) 592, 616
Kzo9I GATC 7 cut(s) 4, 109, 274, 457, 592, 616, 737
LmnI GCTCC 3 cut(s) 176, 232, 502
Lsp1109I GCAGC 3 cut(s) 567, 589, 652
LweI GCATC 2 cut(s) 158, 727
MaeI CTAG 2 cut(s) 573, 756
MaeII ACGT 2 cut(s) 498, 697
MaeIII GTNAC 1 cut(s) 452
MalI GATC 7 cut(s) 6, 111, 276, 459, 594, 618, 739
MboI GATC 7 cut(s) 4, 109, 274, 457, 592, 616, 737
MboII GAAGA 7 cut(s) 25, 28, 269, 346, 445, 451, 562
MflI RGATCY 2 cut(s) 274, 737
MluCI AATT 3 cut(s) 67, 145, 264
MlyI GAGTC 2 cut(s) 208, 220
MseI TTAA 2 cut(s) 54, 489
MslI CAYNNNNRTG 2 cut(s) 603, 648
MspA1I CMGCKG 1 cut(s) 580
MspI CCGG 1 cut(s) 424
MspR9I CCNGG 2 cut(s) 348, 657
MvaI CCWGG 2 cut(s) 348, 657
MwoI GCNNNNNNNGC 3 cut(s) 631, 640, 646
NdeII GATC 7 cut(s) 4, 109, 274, 457, 592, 616, 737
NlaIII CATG 7 cut(s) 116, 144, 475, 608, 617, 653, 670
NlaIV GGNNCC 4 cut(s) 26, 138, 504, 751
NmuCI GTSAC 1 cut(s) 452
NspI RCATGY 2 cut(s) 653, 670
PaeI GCATGC 1 cut(s) 653
PagI TCATGA 2 cut(s) 604, 613
PaqCI CACCTGC 1 cut(s) 654
PceI AGGCCT 1 cut(s) 410
PciI ACATGT 1 cut(s) 666
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 3 cut(s) 579, 582, 642
PleI GAGTC 2 cut(s) 208, 220
PpsI GAGTC 2 cut(s) 208, 220
Ppu21I YACGTR 1 cut(s) 499
PscI ACATGT 1 cut(s) 666
Psp6I CCWGG 2 cut(s) 346, 655
PspFI CCCAGC 1 cut(s) 481
PspGI CCWGG 2 cut(s) 346, 655
PspN4I GGNNCC 4 cut(s) 26, 138, 504, 751
PspPI GGNCC 3 cut(s) 136, 468, 749
PstNI CAGNNNCTG 2 cut(s) 583, 646
PsuI RGATCY 2 cut(s) 274, 737
PvuII CAGCTG 1 cut(s) 580
RsaI GTAC 3 cut(s) 26, 392, 587
RsaNI GTAC 3 cut(s) 25, 391, 586
RseI CAYNNNNRTG 2 cut(s) 603, 648
SaqAI TTAA 2 cut(s) 54, 489
SatI GCNGC 3 cut(s) 578, 581, 641
Sau3AI GATC 7 cut(s) 4, 109, 274, 457, 592, 616, 737
Sau96I GGNCC 3 cut(s) 136, 468, 749
ScaI AGTACT 1 cut(s) 392
SchI GAGTC 2 cut(s) 208, 220
ScrFI CCNGG 2 cut(s) 348, 657
SetI ASST 9 cut(s) 310, 343, 418, 501, 582, 648, 658, 700, 712
SfaNI GCATC 2 cut(s) 158, 727
SinI GGWCC 2 cut(s) 136, 749
SmiMI CAYNNNNRTG 2 cut(s) 603, 648
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
SphI GCATGC 1 cut(s) 653
Sse9I AATT 3 cut(s) 67, 145, 264
SseBI AGGCCT 1 cut(s) 410
SspMI CTAG 2 cut(s) 573, 756
StuI AGGCCT 1 cut(s) 410
StyD4I CCNGG 2 cut(s) 346, 655
TaaI ACNGT 4 cut(s) 29, 102, 385, 452
TaiI ACGT 2 cut(s) 501, 700
TasI AATT 3 cut(s) 67, 145, 264
TatI WGTACW 1 cut(s) 390
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 2 cut(s) 54, 489
Tru9I TTAA 2 cut(s) 54, 489
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 3 cut(s) 577, 580, 640
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 6 cut(s) 165, 170, 269, 347, 621, 677
TspRI CASTG 1 cut(s) 105
VpaK11BI GGWCC 2 cut(s) 136, 749
XapI RAATTY 1 cut(s) 67
XceI RCATGY 2 cut(s) 653, 670
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XspI CTAG 2 cut(s) 573, 756
ZrmI AGTACT 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.