Prupe.4G022800_v2.0.a1

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
1074995 .. 1077161
2167 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G022800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 465 bp
ATGTTGAGAAGAAATACTAGATTGAGGAAATATTTGTACAGAAATAGCTTAGAAGGCAAAGAACGCCTTATCTACGAGAAGAAGCGCAAGATTAGAGAAGCTCTGCAAGAGGGAAAACCGATTCCCACTGAGCTTCGGAATGAAGAGGCGGTGCTTCTACCAAGGACACATATCGACGATGAGTATGCAAAGGCAGCAAAAAGAGATCCCAAGATTTTGATAACTACTTCCTGGAATCCGAGTGCTCCGCTAGTACAATTTGCAAAGGAACTGAACCTTGTTTTTCCTAATGCACAACAAATGAACCGTGGTGGCCAGGTTACTTCTGAAATTATTGAAACTTGCTGTGCACATGATTTTACAGATGTTGTGTTGGTTCATGAAAATCGTGGCGTACCTGATGGTTTGTTTATAATCCCCTTCCCTTTGATCCAACAGCAGTTTTTGAACTGCTCAATGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Brix

Protein Analysis

155

Amino Acids

17.85

Weight (kDa)

8.94

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 413
AciI CCGC 2 cut(s) 149, 248
AclWI GGATC 2 cut(s) 200, 424
AcoI YGGCCR 1 cut(s) 313
AfaI GTAC 3 cut(s) 38, 255, 396
AgsI TTSAA 2 cut(s) 338, 448
AjnI CCWGG 2 cut(s) 230, 315
AluBI AGCT 3 cut(s) 48, 101, 133
AluI AGCT 3 cut(s) 48, 101, 133
Alw21I GWGCWC 2 cut(s) 247, 352
Alw44I GTGCAC 1 cut(s) 348
AlwI GGATC 2 cut(s) 200, 424
AoxI GGCC 1 cut(s) 313
ApaLI GTGCAC 1 cut(s) 348
ApeKI GCWGC 1 cut(s) 194
AspLEI GCGC 1 cut(s) 87
BaeGI GKGCMC 1 cut(s) 352
BalI TGGCCA 1 cut(s) 315
Bbv12I GWGCWC 2 cut(s) 247, 352
BbvI GCAGC 1 cut(s) 206
BccI CCATC 1 cut(s) 395
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 2 cut(s) 232, 317
BfaI CTAG 2 cut(s) 18, 251
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
Bme1390I CCNGG 2 cut(s) 232, 317
BmrFI CCNGG 2 cut(s) 232, 317
BsaJI CCNNGG 2 cut(s) 161, 307
BseBI CCWGG 2 cut(s) 232, 317
BseDI CCNNGG 2 cut(s) 161, 307
BseMII CTCAG 1 cut(s) 120
BseSI GKGCMC 1 cut(s) 352
BseXI GCAGC 1 cut(s) 206
BshFI GGCC 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 247, 352
BsnI GGCC 1 cut(s) 315
Bsp1286I GDGCHC 2 cut(s) 247, 352
Bsp1407I TGTACA 1 cut(s) 36
Bsp143I GATC 2 cut(s) 205, 429
BspACI CCGC 2 cut(s) 149, 248
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 1 cut(s) 121
BspHI TCATGA 1 cut(s) 379
BspPI GGATC 2 cut(s) 200, 424
BsrGI TGTACA 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 161, 307
BssMI GATC 2 cut(s) 205, 429
BssT1I CCWWGG 1 cut(s) 161
Bst2UI CCWGG 2 cut(s) 232, 317
Bst4CI ACNGT 1 cut(s) 308
Bst6I CTCTTC 1 cut(s) 138
BstAUI TGTACA 1 cut(s) 36
BstDEI CTNAG 2 cut(s) 49, 129
BstDSI CCRYGG 1 cut(s) 307
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 2 cut(s) 208, 432
BstMBI GATC 2 cut(s) 205, 429
BstMWI GCNNNNNNNGC 3 cut(s) 54, 63, 194
BstNI CCWGG 2 cut(s) 232, 317
BstSCI CCNGG 2 cut(s) 230, 315
BstSLI GKGCMC 1 cut(s) 352
BstV1I GCAGC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 1 cut(s) 315
BtgI CCRYGG 1 cut(s) 307
BtsIMutI CAGTG 1 cut(s) 126
CciI TCATGA 1 cut(s) 379
CfoI GCGC 1 cut(s) 87
Csp6I GTAC 3 cut(s) 37, 254, 395
CviAII CATG 2 cut(s) 353, 380
CviJI RGCY 4 cut(s) 48, 101, 133, 315
CviKI_1 RGCY 4 cut(s) 48, 101, 133, 315
CviQI GTAC 3 cut(s) 37, 254, 395
DdeI CTNAG 2 cut(s) 49, 129
DpnI GATC 2 cut(s) 207, 431
DpnII GATC 2 cut(s) 205, 429
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 161
EcoRII CCWGG 2 cut(s) 230, 315
EcoT14I CCWWGG 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 2 cut(s) 356, 383
FaiI YATR 5 cut(s) 171, 186, 354, 381, 413
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FatI CATG 2 cut(s) 352, 379
Fnu4HI GCNGC 1 cut(s) 195
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 2 cut(s) 18, 251
GlaI GCGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 195
HaeIII GGCC 1 cut(s) 315
HhaI GCGC 1 cut(s) 87
Hin1II CATG 2 cut(s) 356, 383
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HinfI GANTC 2 cut(s) 121, 235
Hpy166II GTNNAC 1 cut(s) 350
Hpy188I TCNGA 3 cut(s) 138, 240, 328
Hpy188III TCNNGA 1 cut(s) 380
Hpy8I GTNNAC 1 cut(s) 350
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 47, 430
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4V TGCA 5 cut(s) 106, 188, 263, 293, 350
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 63, 194
HpyF3I CTNAG 2 cut(s) 49, 129
Hsp92II CATG 2 cut(s) 356, 383
HspAI GCGC 1 cut(s) 85
Kzo9I GATC 2 cut(s) 205, 429
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 5 cut(s) 217, 244, 302, 329, 411
Lsp1109I GCAGC 1 cut(s) 206
MaeI CTAG 2 cut(s) 18, 251
MaeIII GTNAC 1 cut(s) 319
MalI GATC 2 cut(s) 207, 431
MboI GATC 2 cut(s) 205, 429
MboII GAAGA 3 cut(s) 21, 91, 155
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 2 cut(s) 247, 352
MlsI TGGCCA 1 cut(s) 315
MluCI AATT 2 cut(s) 257, 330
MluNI TGGCCA 1 cut(s) 315
MmeI TCCRAC 1 cut(s) 457
MnlI CCTC 3 cut(s) 18, 103, 139
Mox20I TGGCCA 1 cut(s) 315
MscI TGGCCA 1 cut(s) 315
MseI TTAA 1 cut(s) 463
Msp20I TGGCCA 1 cut(s) 315
MspR9I CCNGG 2 cut(s) 232, 317
MvaI CCWGG 2 cut(s) 232, 317
MwoI GCNNNNNNNGC 3 cut(s) 54, 63, 194
NdeII GATC 2 cut(s) 205, 429
NlaIII CATG 2 cut(s) 356, 383
PagI TCATGA 1 cut(s) 379
PfeI GAWTC 2 cut(s) 121, 235
PfoI TCCNGGA 1 cut(s) 230
PkrI GCNGC 1 cut(s) 196
PsiI TTATAA 1 cut(s) 413
Psp6I CCWGG 2 cut(s) 230, 315
PspGI CCWGG 2 cut(s) 230, 315
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 3 cut(s) 38, 255, 396
RsaNI GTAC 3 cut(s) 37, 254, 395
SaqAI TTAA 1 cut(s) 463
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 2 cut(s) 205, 429
ScrFI CCNGG 2 cut(s) 232, 317
SduI GDGCHC 2 cut(s) 247, 352
SetI ASST 6 cut(s) 50, 103, 135, 279, 321, 400
Sse9I AATT 2 cut(s) 257, 330
SsiI CCGC 2 cut(s) 149, 248
SspI AATATT 1 cut(s) 32
SspMI CTAG 2 cut(s) 18, 251
StyD4I CCNGG 2 cut(s) 230, 315
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 308
TaqI TCGA 1 cut(s) 174
TasI AATT 2 cut(s) 257, 330
TatI WGTACW 2 cut(s) 36, 253
TfiI GAWTC 2 cut(s) 121, 235
Tru1I TTAA 1 cut(s) 463
Tru9I TTAA 1 cut(s) 463
TscAI CASTG 1 cut(s) 133
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 4 cut(s) 156, 317, 368, 396
TspRI CASTG 1 cut(s) 133
VneI GTGCAC 1 cut(s) 348
XspI CTAG 2 cut(s) 18, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.