Prupe.4G031300_v2.0.a1

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
1457996 .. 1461167
3172 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G031300.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 528 bp
ATGAATAAAAAGGGAACATCCACTTGTCGAAACGGGGAAGGGTTCGTGAAGTTGGCGCGTGTGAAGATACCAGACTCGTCCACTCGTACACGAGTGCGGATGAGAATGCGAAGGGTGAAATCATGGCATGGAGATTTGATGGACACAAGGACATATTTGGATATGGGTCAAGATTATATACATACATACGATCGAGTTGATGCAATTACATTAGGGAGGAAGAAAAGATCTTTGGATTGCATGATTGTCTTCCTACTATGTGGCACTGGCATGCTGACTGGGAATTTTCAGGACAGGGAGAATATGAGAGTAGAGAAAGCCATTCGAATGCTTTACGGAGACTATAAATTTTCACTTAGACTTGCCACAGGGTCAACCTACTTGGAAGACTCTACTGCAGATGTTGATGAGACTAGAATAAACTCAGATTTACCATTTTTTGATCTAGCAACCATATCAGTAGCCGCCAACAATTTCTCTGTCGCAAACAAGCTTGGAAAAGGCGGTTTTGGCACAGTCCGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

176

Amino Acids

19.85

Weight (kDa)

9.67

Isoelectric Point (pI)

19.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 58
AccIII TCCGGA 1 cut(s) 519
AciI CCGC 3 cut(s) 97, 465, 504
AcsI RAATTY 2 cut(s) 283, 347
AfaI GTAC 1 cut(s) 88
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AluBI AGCT 1 cut(s) 493
AluI AGCT 1 cut(s) 493
Alw26I GTCTC 2 cut(s) 333, 404
Aor13HI TCCGGA 1 cut(s) 519
ApoI RAATTY 2 cut(s) 283, 347
AspLEI GCGC 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 127
AsuII TTCGAA 1 cut(s) 325
BauI CACGAG 1 cut(s) 90
BbsI GAAGAC 2 cut(s) 241, 393
BccI CCATC 1 cut(s) 133
BcoDI GTCTC 2 cut(s) 333, 404
BfaI CTAG 2 cut(s) 414, 446
BfmI CTRYAG 1 cut(s) 396
BglII AGATCT 1 cut(s) 227
BisI GCNGC 1 cut(s) 465
BlsI GCNGC 1 cut(s) 466
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 1 cut(s) 190
BmuI ACTGGG 1 cut(s) 288
BpiI GAAGAC 2 cut(s) 241, 393
Bpu14I TTCGAA 1 cut(s) 325
BsaWI WCCGGW 1 cut(s) 519
Bse1I ACTGG 2 cut(s) 271, 283
BseAI TCCGGA 1 cut(s) 519
BseGI GGATG 2 cut(s) 17, 105
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 2 cut(s) 271, 283
Bsh1236I CGCG 1 cut(s) 58
Bsh1285I CGRYCG 1 cut(s) 193
BsiEI CGRYCG 1 cut(s) 193
BsiSI CCGG 1 cut(s) 520
BsmAI GTCTC 2 cut(s) 333, 404
BsmI GAATGC 2 cut(s) 111, 333
Bsp119I TTCGAA 1 cut(s) 325
Bsp13I TCCGGA 1 cut(s) 519
Bsp143I GATC 3 cut(s) 190, 227, 442
BspACI CCGC 3 cut(s) 97, 465, 504
BspCNI CTCAG 1 cut(s) 437
BspEI TCCGGA 1 cut(s) 519
BspFNI CGCG 1 cut(s) 58
BspMAI CTGCAG 1 cut(s) 400
BspT104I TTCGAA 1 cut(s) 325
BsrI ACTGG 2 cut(s) 271, 283
BssMI GATC 3 cut(s) 190, 227, 442
BssSI CACGAG 1 cut(s) 90
Bst2BI CACGAG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 517
BstBI TTCGAA 1 cut(s) 325
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 2 cut(s) 356, 424
BstF5I GGATG 2 cut(s) 17, 105
BstFNI CGCG 1 cut(s) 58
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 3 cut(s) 193, 230, 445
BstMAI GTCTC 2 cut(s) 333, 404
BstMBI GATC 3 cut(s) 190, 227, 442
BstMCI CGRYCG 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 510
BstNSI RCATGY 1 cut(s) 274
BstSFI CTRYAG 1 cut(s) 396
BstUI CGCG 1 cut(s) 58
BstV2I GAAGAC 2 cut(s) 241, 393
BstX2I RGATCY 1 cut(s) 227
BstYI RGATCY 1 cut(s) 227
BtsCI GGATG 2 cut(s) 17, 105
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 272
CfoI GCGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 87
CviAII CATG 4 cut(s) 123, 128, 241, 271
CviJI RGCY 3 cut(s) 320, 464, 493
CviKI_1 RGCY 3 cut(s) 320, 464, 493
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 2 cut(s) 356, 424
DpnI GATC 3 cut(s) 192, 229, 444
DpnII GATC 3 cut(s) 190, 227, 442
FaeI CATG 4 cut(s) 126, 131, 244, 274
FatI CATG 4 cut(s) 122, 127, 240, 270
Fnu4HI GCNGC 1 cut(s) 465
FokI GGATG 2 cut(s) 4, 112
Fsp4HI GCNGC 1 cut(s) 465
FspBI CTAG 2 cut(s) 414, 446
GlaI GCGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 465
HapII CCGG 1 cut(s) 520
HhaI GCGC 1 cut(s) 58
Hin1II CATG 4 cut(s) 126, 131, 244, 274
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 2 cut(s) 74, 389
HpaII CCGG 1 cut(s) 520
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 3 cut(s) 81, 89, 375
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 4 cut(s) 46, 170, 290, 520
Hpy8I GTNNAC 3 cut(s) 81, 89, 375
HpyAV CCTTC 2 cut(s) 32, 105
HpyCH4III ACNGT 1 cut(s) 517
HpyCH4V TGCA 3 cut(s) 203, 240, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 510
HpyF3I CTNAG 2 cut(s) 356, 424
Hsp92II CATG 4 cut(s) 126, 131, 244, 274
HspAI GCGC 1 cut(s) 56
Kpn2I TCCGGA 1 cut(s) 519
Kzo9I GATC 3 cut(s) 190, 227, 442
LpnPI CCDG 6 cut(s) 84, 252, 264, 275, 280, 354
LweI GCATC 1 cut(s) 190
MaeI CTAG 2 cut(s) 414, 446
MalI GATC 3 cut(s) 192, 229, 444
MboI GATC 3 cut(s) 190, 227, 442
MboII GAAGA 4 cut(s) 76, 232, 241, 398
MflI RGATCY 1 cut(s) 227
MluCI AATT 4 cut(s) 204, 283, 347, 472
MlyI GAGTC 2 cut(s) 68, 383
MnlI CCTC 1 cut(s) 210
MroI TCCGGA 1 cut(s) 519
MslI CAYNNNNRTG 2 cut(s) 269, 326
MspI CCGG 1 cut(s) 520
Mva1269I GAATGC 2 cut(s) 111, 333
MvnI CGCG 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 510
NdeII GATC 3 cut(s) 190, 227, 442
NlaIII CATG 4 cut(s) 126, 131, 244, 274
NspI RCATGY 1 cut(s) 274
NspV TTCGAA 1 cut(s) 325
PaeI GCATGC 1 cut(s) 274
PctI GAATGC 2 cut(s) 111, 333
PkrI GCNGC 1 cut(s) 466
Ple19I CGATCG 1 cut(s) 193
PleI GAGTC 2 cut(s) 68, 383
PpsI GAGTC 2 cut(s) 68, 383
PstI CTGCAG 1 cut(s) 400
PsuI RGATCY 1 cut(s) 227
PvuI CGATCG 1 cut(s) 193
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
RseI CAYNNNNRTG 2 cut(s) 269, 326
SatI GCNGC 1 cut(s) 465
Sau3AI GATC 3 cut(s) 190, 227, 442
SchI GAGTC 2 cut(s) 68, 383
SetI ASST 2 cut(s) 380, 495
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 1 cut(s) 396
SfuI TTCGAA 1 cut(s) 325
SmiMI CAYNNNNRTG 2 cut(s) 269, 326
SphI GCATGC 1 cut(s) 274
Sse9I AATT 4 cut(s) 204, 283, 347, 472
SsiI CCGC 3 cut(s) 97, 465, 504
SspMI CTAG 2 cut(s) 414, 446
TaaI ACNGT 1 cut(s) 517
TaqI TCGA 3 cut(s) 28, 193, 325
TasI AATT 4 cut(s) 204, 283, 347, 472
TauI GCSGC 1 cut(s) 467
TscAI CASTG 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 1 cut(s) 271
XapI RAATTY 2 cut(s) 283, 347
XceI RCATGY 1 cut(s) 274
XspI CTAG 2 cut(s) 414, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.