Prupe.4G038000_v2.0.a1

complex. Subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
1788137 .. 1789026
890 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G038000.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 312 bp
ATGTGGGGGAGACACTGGAAACACCTCAAGCAGATCATTCAGGCCGAGAATTACCAGAATTACCCACCCCATGAACCCAATTTTTTCACTTTTATTCCTCTTTGGTATTTTGAATTTAGTGTCCTTGAGAGATATTTCTTTAAAAAAAGGATGTCAATGCATCCCTGCAAGAGAATATGTGATATTACAGGATATGAGGCAGCTTACCATGATCCAAGTACCAACCTCCGCTACGCCAATGCTGATAGCTTCCCAATAGAATATGTCCAGACATATCCGGCTCTCAGAAATGCTGCTGTGGTTTTTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

12.53

Weight (kDa)

8.91

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 229
AclWI GGATC 1 cut(s) 206
AcsI RAATTY 1 cut(s) 113
AfaI GTAC 1 cut(s) 220
AgsI TTSAA 1 cut(s) 113
AluBI AGCT 2 cut(s) 203, 249
AluI AGCT 2 cut(s) 203, 249
Alw26I GTCTC 1 cut(s) 4
AlwI GGATC 1 cut(s) 206
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 2 cut(s) 200, 293
ApoI RAATTY 1 cut(s) 113
BbvI GCAGC 2 cut(s) 212, 280
BcoDI GTCTC 1 cut(s) 4
BisI GCNGC 2 cut(s) 201, 294
BlsI GCNGC 2 cut(s) 202, 295
BmsI GCATC 1 cut(s) 169
BpuEI CTTGAG 2 cut(s) 11, 146
Bse1I ACTGG 1 cut(s) 20
BseGI GGATG 2 cut(s) 156, 160
BseMII CTCAG 1 cut(s) 298
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 212, 280
BshFI GGCC 1 cut(s) 44
BsiSI CCGG 1 cut(s) 278
BsmAI GTCTC 1 cut(s) 4
BsnI GGCC 1 cut(s) 44
Bsp143I GATC 2 cut(s) 33, 211
BspACI CCGC 1 cut(s) 229
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 297
BspPI GGATC 1 cut(s) 206
BsrI ACTGG 1 cut(s) 20
BssMI GATC 2 cut(s) 33, 211
BstDEI CTNAG 1 cut(s) 284
BstF5I GGATG 2 cut(s) 156, 160
BstKTI GATC 2 cut(s) 36, 214
BstMAI GTCTC 1 cut(s) 4
BstMBI GATC 2 cut(s) 33, 211
BstV1I GCAGC 2 cut(s) 212, 280
BsuRI GGCC 1 cut(s) 44
BtsCI GGATG 2 cut(s) 156, 160
BtsIMutI CAGTG 1 cut(s) 13
Csp6I GTAC 1 cut(s) 219
CviAII CATG 2 cut(s) 71, 209
CviJI RGCY 4 cut(s) 44, 203, 249, 281
CviKI_1 RGCY 4 cut(s) 44, 203, 249, 281
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 1 cut(s) 284
DpnI GATC 2 cut(s) 35, 213
DpnII GATC 2 cut(s) 33, 211
DraI TTTAAA 1 cut(s) 142
EcoT22I ATGCAT 1 cut(s) 162
FaeI CATG 2 cut(s) 74, 212
FaiI YATR 6 cut(s) 72, 178, 195, 210, 264, 274
FatI CATG 2 cut(s) 70, 208
Fnu4HI GCNGC 2 cut(s) 201, 294
FokI GGATG 2 cut(s) 147, 163
Fsp4HI GCNGC 2 cut(s) 201, 294
GluI GCNGC 2 cut(s) 201, 294
HaeIII GGCC 1 cut(s) 44
HapII CCGG 1 cut(s) 278
Hin1II CATG 2 cut(s) 74, 212
HpaII CCGG 1 cut(s) 278
Hpy188I TCNGA 1 cut(s) 287
Hpy188III TCNNGA 1 cut(s) 268
HpyCH4V TGCA 2 cut(s) 160, 168
HpyF3I CTNAG 1 cut(s) 284
Hsp92II CATG 2 cut(s) 74, 212
Kzo9I GATC 2 cut(s) 33, 211
LpnPI CCDG 6 cut(s) 26, 68, 174, 178, 281, 291
Lsp1109I GCAGC 2 cut(s) 212, 280
LweI GCATC 1 cut(s) 169
MalI GATC 2 cut(s) 35, 213
MboI GATC 2 cut(s) 33, 211
MluCI AATT 4 cut(s) 49, 58, 79, 113
MnlI CCTC 4 cut(s) 35, 108, 190, 236
Mph1103I ATGCAT 1 cut(s) 162
MseI TTAA 2 cut(s) 141, 306
MspI CCGG 1 cut(s) 278
NdeII GATC 2 cut(s) 33, 211
NlaIII CATG 2 cut(s) 74, 212
NmeAIII GCCGAG 1 cut(s) 70
NsiI ATGCAT 1 cut(s) 162
PkrI GCNGC 2 cut(s) 202, 295
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SaqAI TTAA 2 cut(s) 141, 306
SatI GCNGC 2 cut(s) 201, 294
Sau3AI GATC 2 cut(s) 33, 211
SetI ASST 4 cut(s) 27, 205, 228, 251
SfaNI GCATC 1 cut(s) 169
SmlI CTYRAG 2 cut(s) 26, 125
SmoI CTYRAG 2 cut(s) 26, 125
Sse9I AATT 4 cut(s) 49, 58, 79, 113
SsiI CCGC 1 cut(s) 229
TasI AATT 4 cut(s) 49, 58, 79, 113
Tru1I TTAA 2 cut(s) 141, 306
Tru9I TTAA 2 cut(s) 141, 306
TscAI CASTG 1 cut(s) 20
TseI GCWGC 2 cut(s) 200, 293
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 1 cut(s) 20
XapI RAATTY 1 cut(s) 113
Zsp2I ATGCAT 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.