Prupe.4G042300_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
1994945 .. 1996232
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G042300.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 249 bp
ATGAAACAACTGAGAAAGAAAGAAAGGAGTCTGATATCTGAGCATGAGAAAGCTTGTACTGATAAAATTGCTAAACTGGAAGAGTCCTTGAAAAAGAAGAAGCAGGATGACAGAACTTGCAGTGAGTACTTCAGACGCGGACATCTGAGAAAGACTCTTGGCTCATTTCTGGGGAGTACTTCAGACGAGGACATCCCGCCTGATGATCGAATCAACATTCTACTGTTTGAGCTCAAGTCGAGCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.52

Weight (kDa)

9.2

Isoelectric Point (pI)

59.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 243
AccII CGCG 1 cut(s) 138
AciI CCGC 3 cut(s) 138, 197, 243
AcuI CTGAAG 2 cut(s) 115, 165
AfaI GTAC 3 cut(s) 58, 128, 178
AgsI TTSAA 1 cut(s) 91
AluBI AGCT 2 cut(s) 53, 232
AluI AGCT 2 cut(s) 53, 232
Alw21I GWGCWC 1 cut(s) 234
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 234
BfaI CTAG 1 cut(s) 247
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
BmcAI AGTACT 2 cut(s) 128, 178
BplI GAGNNNNNCTC 2 cut(s) 139, 171
BpuEI CTTGAG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 81
BseGI GGATG 2 cut(s) 112, 192
BseMII CTCAG 2 cut(s) 30, 137
BseNI ACTGG 1 cut(s) 81
Bsh1236I CGCG 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 3 cut(s) 138, 197, 243
BspCNI CTCAG 2 cut(s) 31, 138
BspFNI CGCG 1 cut(s) 138
BsrBI CCGCTC 1 cut(s) 243
BsrI ACTGG 1 cut(s) 81
BssMI GATC 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 225
Bst6I CTCTTC 1 cut(s) 75
BstDEI CTNAG 3 cut(s) 11, 39, 146
BstF5I GGATG 2 cut(s) 112, 192
BstFNI CGCG 1 cut(s) 138
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstUI CGCG 1 cut(s) 138
BtsCI GGATG 2 cut(s) 112, 192
BtsI GCAGTG 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 127
CseI GACGC 1 cut(s) 144
Csp6I GTAC 3 cut(s) 57, 127, 177
CviAII CATG 1 cut(s) 44
CviJI RGCY 4 cut(s) 53, 162, 232, 246
CviKI_1 RGCY 4 cut(s) 53, 162, 232, 246
CviQI GTAC 3 cut(s) 57, 127, 177
DdeI CTNAG 3 cut(s) 11, 39, 146
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Ecl136II GAGCTC 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 234
Eco32I GATATC 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 2 cut(s) 115, 165
EcoICRI GAGCTC 1 cut(s) 232
EcoRV GATATC 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 234
FaeI CATG 1 cut(s) 47
FaiI YATR 1 cut(s) 45
FatI CATG 1 cut(s) 43
FauI CCCGC 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 244
FokI GGATG 2 cut(s) 119, 179
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 244
FspBI CTAG 1 cut(s) 247
GluI GCNGC 1 cut(s) 244
HgaI GACGC 1 cut(s) 144
Hin1II CATG 1 cut(s) 47
HindIII AAGCTT 1 cut(s) 51
HinfI GANTC 4 cut(s) 28, 83, 154, 210
Hpy188I TCNGA 5 cut(s) 33, 40, 134, 147, 184
HpyCH4III ACNGT 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 120
HpyF3I CTNAG 3 cut(s) 11, 39, 146
Hsp92II CATG 1 cut(s) 47
Kzo9I GATC 1 cut(s) 205
LpnPI CCDG 4 cut(s) 62, 89, 155, 213
MaeI CTAG 1 cut(s) 247
MalI GATC 1 cut(s) 207
MbiI CCGCTC 1 cut(s) 243
MboI GATC 1 cut(s) 205
MboII GAAGA 2 cut(s) 92, 109
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 1 cut(s) 66
MlyI GAGTC 3 cut(s) 37, 92, 148
MnlI CCTC 1 cut(s) 181
MvnI CGCG 1 cut(s) 138
NdeII GATC 1 cut(s) 205
NlaIII CATG 1 cut(s) 47
PfeI GAWTC 1 cut(s) 210
PkrI GCNGC 1 cut(s) 245
PleI GAGTC 3 cut(s) 36, 91, 148
PpsI GAGTC 3 cut(s) 36, 91, 148
Psp124BI GAGCTC 1 cut(s) 234
RsaI GTAC 3 cut(s) 58, 128, 178
RsaNI GTAC 3 cut(s) 57, 127, 177
SacI GAGCTC 1 cut(s) 234
SatI GCNGC 1 cut(s) 244
Sau3AI GATC 1 cut(s) 205
ScaI AGTACT 2 cut(s) 128, 178
SchI GAGTC 3 cut(s) 37, 92, 148
SduI GDGCHC 1 cut(s) 234
SetI ASST 2 cut(s) 55, 234
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 1 cut(s) 66
SsiI CCGC 3 cut(s) 138, 197, 243
SspMI CTAG 1 cut(s) 247
SstI GAGCTC 1 cut(s) 234
TaaI ACNGT 1 cut(s) 225
TaqI TCGA 2 cut(s) 208, 239
TasI AATT 1 cut(s) 66
TatI WGTACW 3 cut(s) 56, 126, 176
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 1 cut(s) 210
TscAI CASTG 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 127
XspI CTAG 1 cut(s) 247
ZrmI AGTACT 2 cut(s) 128, 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.