Prupe.4G042900_v2.0.a1

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
2033779 .. 2034481
703 bp
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UTR
Exon/CDS
Intron
Prupe.4G042900.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 138 bp
ATGTGTTCAATAGCATATATTGCTTACACGGACTCTGATGGGAATTTTATCTCTGCTGCGGACTCTGAGACATCAGTTGAATATCAGCAAGAACTAAGACCAGAGGAAAATGTACTTTTCTTGGATCCTTCCGGGTAG

Protein Analysis

46

Amino Acids

4.98

Weight (kDa)

4.05

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 59
AclWI GGATC 2 cut(s) 119, 132
AcsI RAATTY 1 cut(s) 43
AfaI GTAC 1 cut(s) 114
AgsI TTSAA 2 cut(s) 9, 80
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 2 cut(s) 119, 132
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 43
AsuC2I CCSGG 1 cut(s) 133
BamHI GGATCC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 32
BcnI CCSGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 62
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 133
BpuMI CCSGG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 43
BsiSI CCGG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 126
BspPI GGATC 2 cut(s) 119, 132
BssMI GATC 1 cut(s) 124
BstAPI GCANNNNNTGC 1 cut(s) 20
BstDEI CTNAG 2 cut(s) 66, 95
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
Csp6I GTAC 1 cut(s) 113
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 2 cut(s) 66, 95
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
FaiI YATR 2 cut(s) 16, 18
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
FspEI CC 9 cut(s) 14, 24, 25, 44, 89, 107, 114, 117, 118
GluI GCNGC 1 cut(s) 57
HapII CCGG 1 cut(s) 132
HinfI GANTC 2 cut(s) 32, 62
HpaII CCGG 1 cut(s) 132
Hpy188I TCNGA 2 cut(s) 37, 67
HpyAV CCTTC 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 2 cut(s) 66, 95
Kzo9I GATC 1 cut(s) 124
LpnPI CCDG 1 cut(s) 114
Lsp1109I GCAGC 1 cut(s) 43
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MflI RGATCY 1 cut(s) 124
MluCI AATT 1 cut(s) 43
MlyI GAGTC 2 cut(s) 26, 56
MnlI CCTC 1 cut(s) 97
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 133
MwoI GCNNNNNNNGC 1 cut(s) 20
NciI CCSGG 1 cut(s) 133
NdeII GATC 1 cut(s) 124
NlaIV GGNNCC 1 cut(s) 126
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 2 cut(s) 26, 56
PpsI GAGTC 2 cut(s) 26, 56
PspN4I GGNNCC 1 cut(s) 126
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 124
SchI GAGTC 2 cut(s) 26, 56
ScrFI CCNGG 1 cut(s) 133
SgeI CNNG 4 cut(s) 40, 101, 113, 133
Sse9I AATT 1 cut(s) 43
SsiI CCGC 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 131
TasI AATT 1 cut(s) 43
TatI WGTACW 1 cut(s) 112
TseI GCWGC 1 cut(s) 56
TspGWI ACGGA 1 cut(s) 44
XapI RAATTY 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.