Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2182541 .. 2184460

Gene Structure 1920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G045700.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCTTTTCATGAAAGGAAGCCCTCAGGAGCCCAAATGTAACGTTAGCCGAATTGCCATTGACATTTTGAAGCGAAAGAAGGTCAAATTTGGAAGTTTCGATGTTCTTACGGACAATGAAGTCATGGAGGGGATAAAGAGGTATTCTAACTGGCCAATAATACCGCAGATTTACTACAAAGGGAAGCCCCGTGGTTGGTGTGACACAGAGAGTTTAATGCGTCGTAGTGGTGAATTAGAGGAAGTTCCCAGAGACCATGGAATTGATACTGCTGCTGATTCTACTGGGGCGAAGGTAACTGAATTAGAGGAAGTTTCCAGAGAACATGGAATGGATACTACTGATTCCGCTGGGGCAAAGGTAACTGAAGCTGGAAGTGGAAAGAGTGGAATCCCAGCATCTACTGGATCTTCTCACGAGCAGATGCAAGTTCAAGTGCAAAATATTCGTCAAAAAGGAATTCAAGTGCAAAATGGCCTTGATGATAACTTGGAAAGGCGGTTGCAGCAACTGATTGACTCTTATCCAGTCATGCTTTTCACGAAAGGAACCCCTGAGGAGCCCAAATGTAAATTGAGCAAATTGGCCATTGACATGTTGAAGGAAGAGAAGATCAAATTTGCAAGTTTCGATGTTCTTTCAGACAATGAAGTCATGGAGGGGATACAGAAGTATTCCAACTGGCCAACATTACCGCAGCTTTACATAGAAGGGAAGGCTCGTGGTTTGCGTCACATACGAACTTTAAAGTGTGGTTTTCGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006810 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010817 GO:0033554 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051726 GO:0060918 GO:0065007 GO:0065008 GO:0072593

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin Thioredoxin

Protein Analysis

256

Amino Acids

28.74

Weight (kDa)

7.64

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	119, 650
AciI	CCGC	4 cut(s)	164, 348, 499, 695
AclI	AACGTT	1 cut(s)	42
AclWI	GGATC	1 cut(s)	415
AcoI	YGGCCR	3 cut(s)	152, 585, 683
AcsI	RAATTY	3 cut(s)	86, 459, 617
AcuI	CTGAAG	1 cut(s)	387
AfiI	CCNNNNNNNGG	1 cut(s)	195
AflIII	ACRYGT	1 cut(s)	594
AgsI	TTSAA	4 cut(s)	70, 434, 464, 601
AluBI	AGCT	2 cut(s)	371, 700
AluI	AGCT	2 cut(s)	371, 700
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	415
AlwNI	CAGNNNCTG	1 cut(s)	511
AoxI	GGCC	4 cut(s)	152, 475, 585, 683
ApeKI	GCWGC	3 cut(s)	272, 505, 697
ApoI	RAATTY	3 cut(s)	86, 459, 617
ArsI	GACNNNNNNTTYG	2 cut(s)	433, 465
AsuHPI	GGTGA	1 cut(s)	242
AxyI	CCTNAGG	2 cut(s)	24, 555
BaeI	ACNNNNGTAYC	2 cut(s)	656, 689
BalI	TGGCCA	3 cut(s)	154, 587, 685
BanII	GRGCYC	2 cut(s)	33, 564
BauI	CACGAG	2 cut(s)	416, 720
BbvI	GCAGC	3 cut(s)	259, 517, 709
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BciVI	GTATCC	2 cut(s)	328, 657
BcoDI	GTCTC	1 cut(s)	246
BfuI	GTATCC	2 cut(s)	328, 657
BisI	GCNGC	3 cut(s)	273, 506, 698
BlsI	GCNGC	3 cut(s)	274, 507, 699
BmiI	GGNNCC	3 cut(s)	30, 550, 561
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	2 cut(s)	407, 414
BmuI	ACTGGG	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	190, 256
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
Bse1I	ACTGG	5 cut(s)	155, 289, 409, 527, 686
Bse21I	CCTNAGG	2 cut(s)	24, 555
BseDI	CCNNGG	2 cut(s)	190, 256
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseMII	CTCAG	2 cut(s)	38, 546
BseNI	ACTGG	5 cut(s)	155, 289, 409, 527, 686
BseRI	GAGGAG	1 cut(s)	572
BseXI	GCAGC	3 cut(s)	259, 517, 709
BseYI	CCCAGC	2 cut(s)	350, 394
BshFI	GGCC	4 cut(s)	154, 477, 587, 685
BslI	CCNNNNNNNGG	1 cut(s)	195
BsmAI	GTCTC	1 cut(s)	246
BsnI	GGCC	4 cut(s)	154, 477, 587, 685
Bso31I	GGTCTC	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	33, 564
Bsp143I	GATC	2 cut(s)	407, 612
Bsp19I	CCATGG	1 cut(s)	256
BspACI	CCGC	4 cut(s)	164, 348, 499, 695
BspANI	GGCC	4 cut(s)	154, 477, 587, 685
BspCNI	CTCAG	2 cut(s)	37, 547
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	3 cut(s)	30, 550, 561
BspPI	GGATC	1 cut(s)	415
BspTNI	GGTCTC	1 cut(s)	246
BsrI	ACTGG	5 cut(s)	155, 289, 409, 527, 686
BssECI	CCNNGG	2 cut(s)	190, 256
BssMI	GATC	2 cut(s)	407, 612
BssSI	CACGAG	2 cut(s)	416, 720
BssT1I	CCWWGG	1 cut(s)	256
Bst2BI	CACGAG	2 cut(s)	416, 720
Bst6I	CTCTTC	1 cut(s)	600
BstDEI	CTNAG	2 cut(s)	24, 555
BstDSI	CCRYGG	2 cut(s)	190, 256
BstKTI	GATC	2 cut(s)	410, 615
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	2 cut(s)	407, 612
BstMWI	GCNNNNNNNGC	1 cut(s)	505
BstNSI	RCATGY	1 cut(s)	598
BstV1I	GCAGC	3 cut(s)	259, 517, 709
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
Bsu36I	CCTNAGG	2 cut(s)	24, 555
BsuI	GTATCC	2 cut(s)	328, 657
BsuRI	GGCC	4 cut(s)	154, 477, 587, 685
BtgI	CCRYGG	2 cut(s)	190, 256
CaiI	CAGNNNCTG	1 cut(s)	511
CciI	TCATGA	1 cut(s)	9
CseI	GACGC	2 cut(s)	209, 719
CviAII	CATG	7 cut(s)	10, 124, 257, 326, 532, 595, 655
DdeI	CTNAG	2 cut(s)	24, 555
DpnI	GATC	2 cut(s)	409, 614
DpnII	GATC	2 cut(s)	407, 612
DraI	TTTAAA	1 cut(s)	747
DrdI	GACNNNNNNGTC	2 cut(s)	119, 650
DseDI	GACNNNNNNGTC	2 cut(s)	119, 650
EaeI	YGGCCR	3 cut(s)	152, 585, 683
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
Eco130I	CCWWGG	1 cut(s)	256
Eco24I	GRGCYC	2 cut(s)	33, 564
Eco31I	GGTCTC	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	387
Eco81I	CCTNAGG	2 cut(s)	24, 555
EcoRI	GAATTC	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	256
EcoT38I	GRGCYC	2 cut(s)	33, 564
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	7 cut(s)	13, 127, 260, 329, 535, 598, 658
FaiI	YATR	9 cut(s)	11, 125, 258, 327, 533, 596, 656, 707, 737
FatI	CATG	7 cut(s)	9, 123, 256, 325, 531, 594, 654
Fnu4HI	GCNGC	3 cut(s)	273, 506, 698
FriOI	GRGCYC	2 cut(s)	33, 564
Fsp4HI	GCNGC	3 cut(s)	273, 506, 698
GluI	GCNGC	3 cut(s)	273, 506, 698
GsaI	CCCAGC	2 cut(s)	354, 398
HaeIII	GGCC	4 cut(s)	154, 477, 587, 685
HgaI	GACGC	2 cut(s)	209, 719
Hin1II	CATG	7 cut(s)	13, 127, 260, 329, 535, 598, 658
HinfI	GANTC	4 cut(s)	278, 344, 390, 518
HphI	GGTGA	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	643
Hpy188III	TCNNGA	6 cut(s)	10, 26, 318, 416, 541, 761
Hpy99I	CGWCG	1 cut(s)	225
HpyAV	CCTTC	5 cut(s)	73, 286, 595, 704, 709
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	5 cut(s)	427, 439, 469, 505, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	505
HpyF3I	CTNAG	2 cut(s)	24, 555
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	7 cut(s)	13, 127, 260, 329, 535, 598, 658
Kzo9I	GATC	2 cut(s)	407, 612
LmnI	GCTCC	2 cut(s)	28, 559
Lsp1109I	GCAGC	3 cut(s)	259, 517, 709
LweI	GCATC	2 cut(s)	407, 414
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	5 cut(s)	38, 200, 295, 361, 731
MalI	GATC	2 cut(s)	409, 614
MboI	GATC	2 cut(s)	407, 612
MboII	GAAGA	3 cut(s)	402, 617, 622
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	2 cut(s)	33, 564
MlsI	TGGCCA	3 cut(s)	154, 587, 685
MluCI	AATT	9 cut(s)	51, 86, 233, 261, 302, 459, 572, 581, 617
MluNI	TGGCCA	3 cut(s)	154, 587, 685
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	1 cut(s)	702
MnlI	CCTC	7 cut(s)	33, 121, 132, 232, 301, 550, 652
Mox20I	TGGCCA	3 cut(s)	154, 587, 685
MscI	TGGCCA	3 cut(s)	154, 587, 685
MseI	TTAA	2 cut(s)	215, 746
MslI	CAYNNNNRTG	1 cut(s)	593
Msp20I	TGGCCA	3 cut(s)	154, 587, 685
MspA1I	CMGCKG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	505
NcoI	CCATGG	1 cut(s)	256
NdeII	GATC	2 cut(s)	407, 612
NlaIII	CATG	7 cut(s)	13, 127, 260, 329, 535, 598, 658
NlaIV	GGNNCC	3 cut(s)	30, 550, 561
NmuCI	GTSAC	2 cut(s)	200, 731
NspI	RCATGY	1 cut(s)	598
PagI	TCATGA	1 cut(s)	9
PciI	ACATGT	1 cut(s)	594
PcsI	WCGNNNNNNNCGW	1 cut(s)	727
PfeI	GAWTC	3 cut(s)	278, 344, 390
PkrI	GCNGC	3 cut(s)	274, 507, 699
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
PscI	ACATGT	1 cut(s)	594
Psp1406I	AACGTT	1 cut(s)	42
PspFI	CCCAGC	2 cut(s)	350, 394
PspN4I	GGNNCC	3 cut(s)	30, 550, 561
PstNI	CAGNNNCTG	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	407
RseI	CAYNNNNRTG	1 cut(s)	593
SaqAI	TTAA	2 cut(s)	215, 746
SatI	GCNGC	3 cut(s)	273, 506, 698
Sau3AI	GATC	2 cut(s)	407, 612
SchI	GAGTC	1 cut(s)	512
SduI	GDGCHC	2 cut(s)	33, 564
SetI	ASST	7 cut(s)	45, 84, 143, 297, 363, 373, 702
SfaNI	GCATC	2 cut(s)	407, 414
SmiMI	CAYNNNNRTG	1 cut(s)	593
Sse9I	AATT	9 cut(s)	51, 86, 233, 261, 302, 459, 572, 581, 617
SsiI	CCGC	4 cut(s)	164, 348, 499, 695
SspI	AATATT	1 cut(s)	445
StyI	CCWWGG	1 cut(s)	256
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	2 cut(s)	99, 630
TasI	AATT	9 cut(s)	51, 86, 233, 261, 302, 459, 572, 581, 617
TfiI	GAWTC	3 cut(s)	278, 344, 390
Tru1I	TTAA	2 cut(s)	215, 746
Tru9I	TTAA	2 cut(s)	215, 746
TseFI	GTSAC	2 cut(s)	200, 731
TseI	GCWGC	3 cut(s)	272, 505, 697
Tsp45I	GTSAC	2 cut(s)	200, 731
TspDTI	ATGAA	3 cut(s)	26, 132, 663
TspGWI	ACGGA	1 cut(s)	125
XapI	RAATTY	3 cut(s)	86, 459, 617
XceI	RCATGY	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.