Prupe.4G046900_v2.0.a1

Phosphoglycerate mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
2232784 .. 2234780
1997 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G046900.1_v2.0.a1.CDS.6

Sequence Viewer

Length: 882 bp
ATGGTTTGTGGAATTCTTAGTTTCAGCTCTGCTTTATCTCCAATCTCCATATCTCACTACAGAAATGGAACAGCTCCAAAGCTCAAGACTGATCTTTCTTCTTCTATTACACTTGGAATTCGATGCTCAAGTTCTAGCTCAGATGTGCCTCAAACCTTTGAAAAATCTGAGAATGATGCTGCTATGACTGGTGGTGCATTTGACTTCACAAGAGCAACAACATCACTTACAGATAATAAGTCAATCGCTTCATCAAAGAAGGTAACTCTTGTCCGGCATGGCCTTAGCTCTTGGAATGAAGAAAGTAGAGTTCAGGGAAGCTCAAACCAATCTGTCCTGACAGAAACTGGAGTGATGCAAGCAGAGAGGTGCAGAAAAGCCATTGCAAATATGCATTTTGATCAGTGTTATTCGAGTCCAATATCTCGGGCCAAGTCCACTGCTGAAATTATATGGCAAGGGAGAGAGGAGCCGCTCGTTTTCCTCGACTCGCTGAAGGAGGCTCATCTGTTTTTCCTTGAAGGCATGAAAAATGAGGATGCCAAGCAGAGATATCCAAAGGAGTATGCAACATGGAGAGAGGACCCTGCTAATTTTTATGTGAATGGAATCTATCCTGTAAGAGAACTATGGGGAACAGCCAGAGAGGCTTGGAAGGAGATCTTGTTAACACCTGGAGAACATGTTTTAGTCATCGCTCACAAATCAATTTTGAGGGCACTGATCTGCACAGCTTTAGGGCTAGGCCCCGAGAGATTTCGTGCCATTGATGTGAACAACGGTGGAATCTCCGTATTCAATTTCAACAAGAAAGGAGAAGCAATGATTCAATCTTTGAACATGACCGCCCACATGTACAGTGATCATGTCTATCTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04217 ko04668 map04137 map04217 map04668
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

294

Amino Acids

32.59

Weight (kDa)

7.68

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 475
AciI CCGC 2 cut(s) 473, 846
AcsI RAATTY 2 cut(s) 12, 117
AcuI CTGAAG 1 cut(s) 515
AfaI GTAC 1 cut(s) 857
AflIII ACRYGT 2 cut(s) 682, 852
AgsI TTSAA 6 cut(s) 161, 521, 799, 805, 830, 838
AjnI CCWGG 1 cut(s) 673
AluBI AGCT 7 cut(s) 27, 74, 82, 138, 288, 321, 734
AluI AGCT 7 cut(s) 27, 74, 82, 138, 288, 321, 734
AlwNI CAGNNNCTG 1 cut(s) 347
Ama87I CYCGRG 2 cut(s) 426, 749
AoxI GGCC 3 cut(s) 280, 429, 745
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 2 cut(s) 12, 117
AspS9I GGNCC 3 cut(s) 429, 583, 746
AvaI CYCGRG 2 cut(s) 426, 749
AvaII GGWCC 1 cut(s) 583
BaeGI GKGCMC 1 cut(s) 721
BbvI GCAGC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 675
BclI TGATCA 2 cut(s) 400, 862
BfaI CTAG 2 cut(s) 135, 743
BfmI CTRYAG 1 cut(s) 58
BglI GCCNNNNNGGC 1 cut(s) 647
BglII AGATCT 1 cut(s) 660
BisI GCNGC 2 cut(s) 180, 473
BlsI GCNGC 2 cut(s) 181, 474
Bme1390I CCNGG 1 cut(s) 675
Bme18I GGWCC 1 cut(s) 583
BmeT110I CYCGRG 2 cut(s) 426, 749
BmgT120I GGNCC 3 cut(s) 429, 583, 746
BmiI GGNNCC 3 cut(s) 471, 585, 748
BmrFI CCNGG 1 cut(s) 675
BmsI GCATC 4 cut(s) 113, 166, 345, 529
BpmI CTGGAG 2 cut(s) 369, 696
Bpu10I CCTNAGC 1 cut(s) 284
BpuEI CTTGAG 2 cut(s) 68, 112
BsaXI ACNNNNNCTCC 4 cut(s) 650, 669, 680, 699
Bse1I ACTGG 2 cut(s) 193, 352
Bse3DI GCAATG 2 cut(s) 381, 828
BseBI CCWGG 1 cut(s) 675
BseGI GGATG 1 cut(s) 544
BseMI GCAATG 2 cut(s) 381, 828
BseMII CTCAG 2 cut(s) 153, 159
BseNI ACTGG 2 cut(s) 193, 352
BseRI GAGGAG 1 cut(s) 482
BseSI GKGCMC 1 cut(s) 721
BseXI GCAGC 1 cut(s) 166
BsgI GTGCAG 2 cut(s) 391, 712
BshFI GGCC 3 cut(s) 282, 431, 747
BsiHKCI CYCGRG 2 cut(s) 426, 749
BsiSI CCGG 1 cut(s) 274
BsnI GGCC 3 cut(s) 282, 431, 747
BsoBI CYCGRG 2 cut(s) 426, 749
Bsp1286I GDGCHC 1 cut(s) 721
Bsp1407I TGTACA 1 cut(s) 855
Bsp143I GATC 5 cut(s) 91, 400, 660, 723, 862
BspACI CCGC 2 cut(s) 473, 846
BspANI GGCC 3 cut(s) 282, 431, 747
BspCNI CTCAG 2 cut(s) 152, 160
BspLI GGNNCC 3 cut(s) 471, 585, 748
BsrBI CCGCTC 1 cut(s) 475
BsrDI GCAATG 2 cut(s) 381, 828
BsrGI TGTACA 1 cut(s) 855
BsrI ACTGG 2 cut(s) 193, 352
BssMI GATC 5 cut(s) 91, 400, 660, 723, 862
Bst2UI CCWGG 1 cut(s) 675
Bst4CI ACNGT 2 cut(s) 782, 860
BstAUI TGTACA 1 cut(s) 855
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 4 cut(s) 17, 139, 168, 284
BstF5I GGATG 1 cut(s) 544
BstKTI GATC 5 cut(s) 94, 403, 663, 726, 865
BstMBI GATC 5 cut(s) 91, 400, 660, 723, 862
BstMWI GCNNNNNNNGC 1 cut(s) 647
BstNI CCWGG 1 cut(s) 675
BstNSI RCATGY 2 cut(s) 686, 856
BstSCI CCNGG 1 cut(s) 673
BstSFI CTRYAG 1 cut(s) 58
BstSLI GKGCMC 1 cut(s) 721
BstV1I GCAGC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 660
BstYI RGATCY 1 cut(s) 660
BsuRI GGCC 3 cut(s) 282, 431, 747
BtgZI GCGATG 1 cut(s) 679
BtsCI GGATG 1 cut(s) 544
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 4 cut(s) 410, 438, 719, 865
Cac8I GCNNGC 1 cut(s) 360
CaiI CAGNNNCTG 1 cut(s) 347
Cfr13I GGNCC 3 cut(s) 429, 583, 746
Csp6I GTAC 1 cut(s) 856
CviAII CATG 7 cut(s) 278, 526, 573, 683, 841, 853, 866
CviQI GTAC 1 cut(s) 856
DdeI CTNAG 4 cut(s) 17, 139, 168, 284
DpnI GATC 5 cut(s) 93, 402, 662, 725, 864
DpnII GATC 5 cut(s) 91, 400, 660, 723, 862
Eco32I GATATC 1 cut(s) 554
Eco47I GGWCC 1 cut(s) 583
Eco57I CTGAAG 1 cut(s) 515
Eco88I CYCGRG 2 cut(s) 426, 749
EcoO109I RGGNCCY 2 cut(s) 583, 746
EcoRI GAATTC 2 cut(s) 12, 117
EcoRII CCWGG 1 cut(s) 673
EcoRV GATATC 1 cut(s) 554
EcoT22I ATGCAT 1 cut(s) 396
FaeI CATG 7 cut(s) 281, 529, 576, 686, 844, 856, 869
FalI AAGNNNNNCTT 2 cut(s) 647, 679
FatI CATG 7 cut(s) 277, 525, 572, 682, 840, 852, 865
FbaI TGATCA 2 cut(s) 400, 862
Fnu4HI GCNGC 2 cut(s) 180, 473
FokI GGATG 1 cut(s) 551
Fsp4HI GCNGC 2 cut(s) 180, 473
FspBI CTAG 2 cut(s) 135, 743
GluI GCNGC 2 cut(s) 180, 473
GsuI CTGGAG 2 cut(s) 369, 696
HaeIII GGCC 3 cut(s) 282, 431, 747
HapII CCGG 1 cut(s) 274
Hin1II CATG 7 cut(s) 281, 529, 576, 686, 844, 856, 869
HincII GTYRAC 1 cut(s) 669
HindII GTYRAC 1 cut(s) 669
HinfI GANTC 5 cut(s) 415, 488, 609, 786, 826
HpaI GTTAAC 1 cut(s) 669
HpaII CCGG 1 cut(s) 274
Hpy166II GTNNAC 3 cut(s) 438, 669, 775
Hpy188I TCNGA 2 cut(s) 142, 169
Hpy188III TCNNGA 2 cut(s) 85, 337
Hpy8I GTNNAC 3 cut(s) 438, 669, 775
HpyAV CCTTC 4 cut(s) 253, 490, 515, 649
HpyCH4III ACNGT 2 cut(s) 782, 860
HpyCH4V TGCA 7 cut(s) 197, 358, 372, 386, 394, 569, 729
HpyF10VI GCNNNNNNNGC 1 cut(s) 647
HpyF3I CTNAG 4 cut(s) 17, 139, 168, 284
Hsp92II CATG 7 cut(s) 281, 529, 576, 686, 844, 856, 869
Ksp22I TGATCA 2 cut(s) 400, 862
KspAI GTTAAC 1 cut(s) 669
Kzo9I GATC 5 cut(s) 91, 400, 660, 723, 862
LmnI GCTCC 2 cut(s) 79, 469
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 4 cut(s) 113, 166, 345, 529
MaeI CTAG 2 cut(s) 135, 743
MaeIII GTNAC 1 cut(s) 262
MalI GATC 5 cut(s) 93, 402, 662, 725, 864
MbiI CCGCTC 1 cut(s) 475
MboI GATC 5 cut(s) 91, 400, 660, 723, 862
MboII GAAGA 3 cut(s) 90, 93, 311
MflI RGATCY 1 cut(s) 660
MhlI GDGCHC 1 cut(s) 721
MluCI AATT 6 cut(s) 12, 117, 447, 592, 708, 799
MlyI GAGTC 2 cut(s) 424, 482
MnlI CCTC 9 cut(s) 159, 360, 460, 493, 494, 529, 574, 640, 708
Mph1103I ATGCAT 1 cut(s) 396
MseI TTAA 1 cut(s) 668
MslI CAYNNNNRTG 1 cut(s) 770
MspI CCGG 1 cut(s) 274
MspR9I CCNGG 1 cut(s) 675
MvaI CCWGG 1 cut(s) 675
MwoI GCNNNNNNNGC 1 cut(s) 647
NdeII GATC 5 cut(s) 91, 400, 660, 723, 862
NlaIII CATG 7 cut(s) 281, 529, 576, 686, 844, 856, 869
NlaIV GGNNCC 3 cut(s) 471, 585, 748
NsiI ATGCAT 1 cut(s) 396
NspI RCATGY 2 cut(s) 686, 856
PciI ACATGT 2 cut(s) 682, 852
PcsI WCGNNNNNNNCGW 1 cut(s) 483
PfeI GAWTC 3 cut(s) 609, 786, 826
PkrI GCNGC 2 cut(s) 181, 474
PleI GAGTC 2 cut(s) 423, 482
PpsI GAGTC 2 cut(s) 423, 482
PpuMI RGGWCCY 1 cut(s) 583
PscI ACATGT 2 cut(s) 682, 852
Psp5II RGGWCCY 1 cut(s) 583
Psp6I CCWGG 1 cut(s) 673
PspGI CCWGG 1 cut(s) 673
PspN4I GGNNCC 3 cut(s) 471, 585, 748
PspPI GGNCC 3 cut(s) 429, 583, 746
PspPPI RGGWCCY 1 cut(s) 583
PstNI CAGNNNCTG 1 cut(s) 347
PsuI RGATCY 1 cut(s) 660
RsaI GTAC 1 cut(s) 857
RsaNI GTAC 1 cut(s) 856
RseI CAYNNNNRTG 1 cut(s) 770
SaqAI TTAA 1 cut(s) 668
SatI GCNGC 2 cut(s) 180, 473
Sau3AI GATC 5 cut(s) 91, 400, 660, 723, 862
Sau96I GGNCC 3 cut(s) 429, 583, 746
SchI GAGTC 2 cut(s) 424, 482
ScrFI CCNGG 1 cut(s) 675
SduI GDGCHC 1 cut(s) 721
SfaNI GCATC 4 cut(s) 113, 166, 345, 529
SfcI CTRYAG 1 cut(s) 58
SinI GGWCC 1 cut(s) 583
SmiMI CAYNNNNRTG 1 cut(s) 770
SmlI CTYRAG 2 cut(s) 83, 127
SmoI CTYRAG 2 cut(s) 83, 127
Sse9I AATT 6 cut(s) 12, 117, 447, 592, 708, 799
SsiI CCGC 2 cut(s) 473, 846
SspMI CTAG 2 cut(s) 135, 743
StyD4I CCNGG 1 cut(s) 673
TaaI ACNGT 2 cut(s) 782, 860
TaqI TCGA 3 cut(s) 121, 413, 486
TasI AATT 6 cut(s) 12, 117, 447, 592, 708, 799
TatI WGTACW 1 cut(s) 855
TauI GCSGC 1 cut(s) 475
TfiI GAWTC 3 cut(s) 609, 786, 826
Tru1I TTAA 1 cut(s) 668
Tru9I TTAA 1 cut(s) 668
TscAI CASTG 4 cut(s) 410, 445, 726, 865
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 3 cut(s) 240, 312, 542
TspGWI ACGGA 1 cut(s) 781
TspRI CASTG 4 cut(s) 410, 445, 726, 865
VpaK11BI GGWCC 1 cut(s) 583
XapI RAATTY 2 cut(s) 12, 117
XceI RCATGY 2 cut(s) 686, 856
XspI CTAG 2 cut(s) 135, 743
Zsp2I ATGCAT 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.